Click here to switch to the map view.

The map label for this gene is 71905662

Identifier: 71905662

GI number: 71905662

Start: 25900

End: 26931

Strand: Reverse

Name: 71905662

Synonym: Daro_0020

Alternate gene names: NA

Gene position: 26931-25900 (Counterclockwise)

Preceding gene: 71905666

Following gene: 71905661

Centisome position: 0.6

GC content: 57.27

Gene sequence:

>1032_bases
ATGGTTCGCATTATATCCGCGCTCATCCTGGCCGTGACGGCCGTCTGCGCATCGGCCGCCGAGCCGCTACAACTCGTCGA
CAATCCGCCTGATCGTCATATCGTCGTCAAGGGCGACACGTTGTGGGGCATTTCCGGCAAATTCCTCAAGCAGCCGTGGC
GCTGGCCGGAAATCTGGCAGATGAACAAGGAACAGATCAAGAACCCGCACTGGATTTATCCGGGCGACGTCATCATGCTC
GATATGTCGAGCGGTACCCCGCGCCTGAAGATTGGCAAACCCGTCACCGGGCAAAGCGGCAAGGTTCAGCCGACCGTCTA
TAGCACCCCGGTGCAGCAGGTCATTCCGAGCATCCCCCCCAATGCCATTGAACCGTTCCTCTCCAAGCCACTGATTATCG
AGACAACGGATCAGAACGCGACAGTCAGCATCGTCGCAACCCAGGAAGATCGCATGCTGGTCGGTACGGGTGATTCTTTC
TACGCCCAAGGCATTCCCGATTCAAGCATCGAAAAATGGAATGTATTCCGCAAGGGCAAGCCGCTGAAAGATCCGGATAC
CGGCGAGACTATTGCTTACGAAGCCGTTTTCCTCGGCAATGCCCGCTTGGTCAAGCCAGGCGAACCGGCAACGCTGCGCG
TCACCCTGGCCAAAGAAGAAATGAATCGCGGCGACAATCTTTTGCCCGCTCCTCCCCCGGAAATTCTGACCTACGTACCG
CACCGCCCTGAGCAGGAAGTCTCAGCCAAAGTGCTTGGTATTTATGGCGGGGTGCAAGAGGGTGGCGCCAATTCGGTCAT
TTCCATCAGCCGTGGCAAGAATAGCGGTCTCGAACTGGGACATGTCGTTGCGCTCTACCGGAATCGTGTTTCGGTCAGCA
TTGATGAAGACGGCCGTCGCACTTCAACTCCGGTACCTGAAGAACGTTATGGCCTTGCCTTCGTTTTCCGCGTCTTTGAC
CGCGTCGCCTACGCCTTGGTCGTCGAGTCCTCCAAGGCAGTCATCATCGGGGACTCCGCACTGAACCCGTGA

Upstream 100 bases:

>100_bases
CAGAATCTAAAGCAATTCCGAGGTATGGAACGCAAACTGATTGCCGCCAATAAGACAGCGACGACGTTATTGCGTTCCAC
CGGCACGTGAGGTTACGACT

Downstream 100 bases:

>100_bases
GCCATAACGACAGTCTGGCCGCCTGGTTGCGGCTGACCCTGATCCCGGGCATCGGCGGCGAGACGCAAAGAAAGCTTCTC
GCCGCTTTCGGTTTACCGGA

Product: peptidoglycan-binding LysM

Products: NA

Alternate protein names: LysM Domain Protein; Cell Wall Degradation; LysM Motif-Containing Protein; Protein Containing LysM Domain; Signal Peptide Protein; LysM Family Cell Wall Degradation Protein; Lysin Domain-Containing Protein; Signal Peptide Protein LysM Domain Protein; Secreted Protein

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MVRIISALILAVTAVCASAAEPLQLVDNPPDRHIVVKGDTLWGISGKFLKQPWRWPEIWQMNKEQIKNPHWIYPGDVIML
DMSSGTPRLKIGKPVTGQSGKVQPTVYSTPVQQVIPSIPPNAIEPFLSKPLIIETTDQNATVSIVATQEDRMLVGTGDSF
YAQGIPDSSIEKWNVFRKGKPLKDPDTGETIAYEAVFLGNARLVKPGEPATLRVTLAKEEMNRGDNLLPAPPPEILTYVP
HRPEQEVSAKVLGIYGGVQEGGANSVISISRGKNSGLELGHVVALYRNRVSVSIDEDGRRTSTPVPEERYGLAFVFRVFD
RVAYALVVESSKAVIIGDSALNP

Sequences:

>Translated_343_residues
MVRIISALILAVTAVCASAAEPLQLVDNPPDRHIVVKGDTLWGISGKFLKQPWRWPEIWQMNKEQIKNPHWIYPGDVIML
DMSSGTPRLKIGKPVTGQSGKVQPTVYSTPVQQVIPSIPPNAIEPFLSKPLIIETTDQNATVSIVATQEDRMLVGTGDSF
YAQGIPDSSIEKWNVFRKGKPLKDPDTGETIAYEAVFLGNARLVKPGEPATLRVTLAKEEMNRGDNLLPAPPPEILTYVP
HRPEQEVSAKVLGIYGGVQEGGANSVISISRGKNSGLELGHVVALYRNRVSVSIDEDGRRTSTPVPEERYGLAFVFRVFD
RVAYALVVESSKAVIIGDSALNP
>Mature_343_residues
MVRIISALILAVTAVCASAAEPLQLVDNPPDRHIVVKGDTLWGISGKFLKQPWRWPEIWQMNKEQIKNPHWIYPGDVIML
DMSSGTPRLKIGKPVTGQSGKVQPTVYSTPVQQVIPSIPPNAIEPFLSKPLIIETTDQNATVSIVATQEDRMLVGTGDSF
YAQGIPDSSIEKWNVFRKGKPLKDPDTGETIAYEAVFLGNARLVKPGEPATLRVTLAKEEMNRGDNLLPAPPPEILTYVP
HRPEQEVSAKVLGIYGGVQEGGANSVISISRGKNSGLELGHVVALYRNRVSVSIDEDGRRTSTPVPEERYGLAFVFRVFD
RVAYALVVESSKAVIIGDSALNP

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37464; Mature: 37464

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRIISALILAVTAVCASAAEPLQLVDNPPDRHIVVKGDTLWGISGKFLKQPWRWPEIWQ
CHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCEEEEECCEEECCCCHHHCCCCCCHHHHC
MNKEQIKNPHWIYPGDVIMLDMSSGTPRLKIGKPVTGQSGKVQPTVYSTPVQQVIPSIPP
CCHHHCCCCCEECCCCEEEEECCCCCCEEEECCCCCCCCCEECCEEECCCHHHHCCCCCC
NAIEPFLSKPLIIETTDQNATVSIVATQEDRMLVGTGDSFYAQGIPDSSIEKWNVFRKGK
HHHHHHHCCCEEEEECCCCCEEEEEEECCCEEEEECCCCEEECCCCCCCHHHHHHHHCCC
PLKDPDTGETIAYEAVFLGNARLVKPGEPATLRVTLAKEEMNRGDNLLPAPPPEILTYVP
CCCCCCCCCEEEEEEEEECCEEEECCCCCCEEEEEEEHHHHCCCCCCCCCCCHHHEEECC
HRPEQEVSAKVLGIYGGVQEGGANSVISISRGKNSGLELGHVVALYRNRVSVSIDEDGRR
CCCCHHHCEEEEEEECCCCCCCCCCEEEEECCCCCCCCHHHEEEEECCCEEEEECCCCCC
TSTPVPEERYGLAFVFRVFDRVAYALVVESSKAVIIGDSALNP
CCCCCCCHHHHHHHHHHHHHHHHEEEEEECCCEEEEECCCCCC
>Mature Secondary Structure
MVRIISALILAVTAVCASAAEPLQLVDNPPDRHIVVKGDTLWGISGKFLKQPWRWPEIWQ
CHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCEEEEECCEEECCCCHHHCCCCCCHHHHC
MNKEQIKNPHWIYPGDVIMLDMSSGTPRLKIGKPVTGQSGKVQPTVYSTPVQQVIPSIPP
CCHHHCCCCCEECCCCEEEEECCCCCCEEEECCCCCCCCCEECCEEECCCHHHHCCCCCC
NAIEPFLSKPLIIETTDQNATVSIVATQEDRMLVGTGDSFYAQGIPDSSIEKWNVFRKGK
HHHHHHHCCCEEEEECCCCCEEEEEEECCCEEEEECCCCEEECCCCCCCHHHHHHHHCCC
PLKDPDTGETIAYEAVFLGNARLVKPGEPATLRVTLAKEEMNRGDNLLPAPPPEILTYVP
CCCCCCCCCEEEEEEEEECCEEEECCCCCCEEEEEEEHHHHCCCCCCCCCCCHHHEEECC
HRPEQEVSAKVLGIYGGVQEGGANSVISISRGKNSGLELGHVVALYRNRVSVSIDEDGRR
CCCCHHHCEEEEEEECCCCCCCCCCEEEEECCCCCCCCHHHEEEEECCCEEEEECCCCCC
TSTPVPEERYGLAFVFRVFDRVAYALVVESSKAVIIGDSALNP
CCCCCCCHHHHHHHHHHHHHHHHEEEEEECCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA