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The map label for this gene is yabD [H]

Identifier: 71894001

GI number: 71894001

Start: 854820

End: 856082

Strand: Reverse

Name: yabD [H]

Synonym: MHJ_0653

Alternate gene names: 71894001

Gene position: 856082-854820 (Counterclockwise)

Preceding gene: 71894010

Following gene: 71894000

Centisome position: 95.4

GC content: 25.26

Gene sequence:

>1263_bases
TTATCAAAATTAACTATGTATTTAAAAATTCAGCAATTTTTACCGCGGTATTTAGAATTATTTCAGAAAACTATTAAAAA
ATTTAGTTTAGAATTAAATGTAGTAACAAAAAAAGGCAAAAATAAAATCAGTAATTTTGATTATTATCAAAATTTTGAAA
CAAATTATGAATTTTTGGTTGTTGATGAGCATAAACAAGCTGATTTTATTTTTGCTTTTTTTGTACTTTCAAGAAAAGAA
CAAACTTTTTATCTAAATCTGCCTTTTTTTAGTCAGTTTTTAGATAAAAACTGAATTAATATTATTGGTGAATTTATTCT
CGATTTTATAGAAGAAAATTATCATTTTGAAACTTTTTATGTTCAAATTAGCAATTTGGACACAAAAATTAATAATTTTT
TTCAAAAATTTGCCATATCTTTTGATGGCAATTCAAATACTTTTAAGTTTAATTTGGTAAAAAGATACGAATTTATCGAC
ATTCACTGCCATCCTTTTTCAGAATATTTTCAAGATTCAAAAGCACAAGTTGATAATTGGTTTAAAAAAAATATTGGACT
TATTTTCGTTGTTGGAACTTCATGAGAATATCTTGAAGAAATTAAAAAAATAGGTAATTATTCAAAAAAAATCTATAAAA
TCATAGGGATTCATCCAACTTTGGTCGCAGAAAATGATAATTTTTCCCTACTTGAAAATCATATTGATGATAAAGTTTTA
GCCATCGGCGAAGTCGGTCTTGATTTTTACTATGAAAATAATCCGCCAAAAGATGTCCAAATAAAAGCGCTTTTGGATCA
AATTCAAATCGCAAAATCAAAAAAAATCCCAGTTATGTTACATATTCGCGATAAGTCAGGTGAAAATCAAGCAATGAAAT
TAATTTCAGAAATTGTAACTAAATTTTCTAAAATTAATTTCATATTTCATAATTTTTCAACAAATTATGAAATATTTCAA
AAATTAGTAAAGAAAAACAACTGTTTTTTTTCATTTTCGGGAGTTATTACCTTCAAAAAAAGCATTGAATTAAGAAGAAT
AATTAAAGAAACCCCGCTTGAGAAAATTTTTACCGAAACCGATGTGCCTTATTTAAGCCCTGAACCGAATCGCCAACTTT
GACCAAATGTTTCTCCCCAAATTCAGTGAACTTATCAAACGATAGCAAATTTAAAAAATTTGACAAAAACAGAACTTTCT
GAAATAATTTATAGAAATGTAAGGAAAATTTTTAAAGTAAAAAATGCAAAAACCGGTTCCTAA

Upstream 100 bases:

>100_bases
TTTTTTGCATCAATATTCATTTTATTTCTTTCTCCTTTTATATTATAATTAAAAATTGTATTATAATAAAACAAAATTAT
AATAAATTTTTATCTATTAA

Downstream 100 bases:

>100_bases
GAAGCATTTAGGTCAGAATTTTTTAAAAGATAGAAAAATTGCTGAAAAAATAGTTGAAAATATTGATCTTAAAAACAAAG
AAATTATCGAAATAGGTTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MSKLTMYLKIQQFLPRYLELFQKTIKKFSLELNVVTKKGKNKISNFDYYQNFETNYEFLVVDEHKQADFIFAFFVLSRKE
QTFYLNLPFFSQFLDKNWINIIGEFILDFIEENYHFETFYVQISNLDTKINNFFQKFAISFDGNSNTFKFNLVKRYEFID
IHCHPFSEYFQDSKAQVDNWFKKNIGLIFVVGTSWEYLEEIKKIGNYSKKIYKIIGIHPTLVAENDNFSLLENHIDDKVL
AIGEVGLDFYYENNPPKDVQIKALLDQIQIAKSKKIPVMLHIRDKSGENQAMKLISEIVTKFSKINFIFHNFSTNYEIFQ
KLVKKNNCFFSFSGVITFKKSIELRRIIKETPLEKIFTETDVPYLSPEPNRQLWPNVSPQIQWTYQTIANLKNLTKTELS
EIIYRNVRKIFKVKNAKTGS

Sequences:

>Translated_420_residues
LSKLTMYLKIQQFLPRYLELFQKTIKKFSLELNVVTKKGKNKISNFDYYQNFETNYEFLVVDEHKQADFIFAFFVLSRKE
QTFYLNLPFFSQFLDKN*INIIGEFILDFIEENYHFETFYVQISNLDTKINNFFQKFAISFDGNSNTFKFNLVKRYEFID
IHCHPFSEYFQDSKAQVDNWFKKNIGLIFVVGTS*EYLEEIKKIGNYSKKIYKIIGIHPTLVAENDNFSLLENHIDDKVL
AIGEVGLDFYYENNPPKDVQIKALLDQIQIAKSKKIPVMLHIRDKSGENQAMKLISEIVTKFSKINFIFHNFSTNYEIFQ
KLVKKNNCFFSFSGVITFKKSIELRRIIKETPLEKIFTETDVPYLSPEPNRQL*PNVSPQIQ*TYQTIANLKNLTKTELS
EIIYRNVRKIFKVKNAKTGS
>Mature_420_residues
LSKLTMYLKIQQFLPRYLELFQKTIKKFSLELNVVTKKGKNKISNFDYYQNFETNYEFLVVDEHKQADFIFAFFVLSRKE
QTFYLNLPFFSQFLDKN*INIIGEFILDFIEENYHFETFYVQISNLDTKINNFFQKFAISFDGNSNTFKFNLVKRYEFID
IHCHPFSEYFQDSKAQVDNWFKKNIGLIFVVGTS*EYLEEIKKIGNYSKKIYKIIGIHPTLVAENDNFSLLENHIDDKVL
AIGEVGLDFYYENNPPKDVQIKALLDQIQIAKSKKIPVMLHIRDKSGENQAMKLISEIVTKFSKINFIFHNFSTNYEIFQ
KLVKKNNCFFSFSGVITFKKSIELRRIIKETPLEKIFTETDVPYLSPEPNRQL*PNVSPQIQ*TYQTIANLKNLTKTELS
EIIYRNVRKIFKVKNAKTGS

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI225903424, Length=209, Percent_Identity=29.1866028708134, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI110349730, Length=271, Percent_Identity=28.4132841328413, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI110349734, Length=271, Percent_Identity=28.0442804428044, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI226061853, Length=275, Percent_Identity=27.2727272727273, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI226061595, Length=233, Percent_Identity=27.4678111587983, Blast_Score=67, Evalue=4e-11,
Organism=Escherichia coli, GI1787342, Length=271, Percent_Identity=28.0442804428044, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI87082439, Length=266, Percent_Identity=25.5639097744361, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI48994985, Length=257, Percent_Identity=25.6809338521401, Blast_Score=87, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17543026, Length=195, Percent_Identity=27.6923076923077, Blast_Score=72, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17565396, Length=221, Percent_Identity=26.6968325791855, Blast_Score=71, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 49063; Mature: 49063

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
LSKLTMYLKIQQFLPRYLELFQKTIKKFSLELNVVTKKGKNKISNFDYYQNFETNYEFLV
CCCEEHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCCHHCCCCCCEEEEE
VDEHKQADFIFAFFVLSRKEQTFYLNLPFFSQFLDKNINIIGEFILDFIEENYHFETFYV
EECCCCCHHEEEEHHHCCCCCEEEEECHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEE
QISNLDTKINNFFQKFAISFDGNSNTFKFNLVKRYEFIDIHCHPFSEYFQDSKAQVDNWF
EEECCCHHHHHHHHHHEEEECCCCCEEEEEEEEEEEEEEEEECCCHHHHCCCHHHHHHHH
KKNIGLIFVVGTSEYLEEIKKIGNYSKKIYKIIGIHPTLVAENDNFSLLENHIDDKVLAI
HCCCCEEEEECCHHHHHHHHHHHCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEE
GEVGLDFYYENNPPKDVQIKALLDQIQIAKSKKIPVMLHIRDKSGENQAMKLISEIVTKF
EEECEEEEECCCCCCCEEHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH
SKINFIFHNFSTNYEIFQKLVKKNNCFFSFSGVITFKKSIELRRIIKETPLEKIFTETDV
HHHEEEEEECCCCHHHHHHHHHCCCCEEEECCEEEEHHHHHHHHHHHHCCHHHHHHCCCC
PYLSPEPNRQLPNVSPQIQTYQTIANLKNLTKTELSEIIYRNVRKIFKVKNAKTGS
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]