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The map label for this gene is rnhB

Identifier: 71892067

GI number: 71892067

Start: 339451

End: 340104

Strand: Direct

Name: rnhB

Synonym: BPEN_293

Alternate gene names: 71892067

Gene position: 339451-340104 (Clockwise)

Preceding gene: 71892066

Following gene: 71892068

Centisome position: 42.88

GC content: 31.19

Gene sequence:

>654_bases
ATGACAACAATGTTATCTATTGTGCAAGTAAAAAATAATGAAATACCAAAAACACTATCTATCAAAAAATTTAAATTAAT
TGCAGGAGTAGATGAATCAGGATGTGGATCATTAGTTGGGTCAGTAATAGCTGCTGCAGTGATATTGCATTCAATACAAC
CAATTTCTGGATTAGCTGATTCCAAGACATTAAATAAAAATAAAAGACTCAATTTATATAAAAATATTATTAAAAATGCA
TTAGCCTGGAGCATCGGATATGCTGATGTTACAGAAATTGATCGTTCTAATATTTTAGAAGCTCGTTTATTAGCAATGAA
ACGAGCAGTGCATAATTTATCTGTTAAACCAGATTTAATTTTAATAGATGGAAATCGTTCTCCAGGATTTACAGAAATAC
CTTATCAATGTTTTAACAAAGGAGATGCTCGGATAGCAATTATAAGCGCAGCTTCCATTATAGCTAAAGTTACGCGTGAT
CAAGATATGATCATATTAGATAAGCAATATCCAAAATATGGATTTGCTCAAAACAAAGGATATCCTACTTTTTTTCACTT
AAAACAACTAGCGCTATACGGTCCTATATCACAGCATCGAAAAAGCTTTGCTCCTGTAAAACATGTGATTTCTGATATTA
ATAGGAAACTCTAG

Upstream 100 bases:

>100_bases
ATCAACATATAGTATTGAAAAAAAAATTTAGACAATTACATCACAGCATTAGATGTAATGCAGATGAACAAGCAGCCTAT
GCGGTTTTGAGATTAATCAA

Downstream 100 bases:

>100_bases
GTTTAATATAATGAGATATACATTATTGCTTATGATCTTTTAAATTATGATAAAACCACGTTTTATTCACTTGCACGTAC
ATAGCGATTACTCCATGATT

Product: ribonuclease HII

Products: NA

Alternate protein names: RNase HII

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MTTMLSIVQVKNNEIPKTLSIKKFKLIAGVDESGCGSLVGSVIAAAVILHSIQPISGLADSKTLNKNKRLNLYKNIIKNA
LAWSIGYADVTEIDRSNILEARLLAMKRAVHNLSVKPDLILIDGNRSPGFTEIPYQCFNKGDARIAIISAASIIAKVTRD
QDMIILDKQYPKYGFAQNKGYPTFFHLKQLALYGPISQHRKSFAPVKHVISDINRKL

Sequences:

>Translated_217_residues
MTTMLSIVQVKNNEIPKTLSIKKFKLIAGVDESGCGSLVGSVIAAAVILHSIQPISGLADSKTLNKNKRLNLYKNIIKNA
LAWSIGYADVTEIDRSNILEARLLAMKRAVHNLSVKPDLILIDGNRSPGFTEIPYQCFNKGDARIAIISAASIIAKVTRD
QDMIILDKQYPKYGFAQNKGYPTFFHLKQLALYGPISQHRKSFAPVKHVISDINRKL
>Mature_216_residues
TTMLSIVQVKNNEIPKTLSIKKFKLIAGVDESGCGSLVGSVIAAAVILHSIQPISGLADSKTLNKNKRLNLYKNIIKNAL
AWSIGYADVTEIDRSNILEARLLAMKRAVHNLSVKPDLILIDGNRSPGFTEIPYQCFNKGDARIAIISAASIIAKVTRDQ
DMIILDKQYPKYGFAQNKGYPTFFHLKQLALYGPISQHRKSFAPVKHVISDINRKL

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family

Homologues:

Organism=Escherichia coli, GI1786380, Length=187, Percent_Identity=54.5454545454545, Blast_Score=209, Evalue=1e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNH2_BLOPB (Q493B8)

Other databases:

- EMBL:   CP000016
- RefSeq:   YP_277797.1
- ProteinModelPortal:   Q493B8
- SMR:   Q493B8
- STRING:   Q493B8
- GeneID:   3562930
- GenomeReviews:   CP000016_GR
- KEGG:   bpn:BPEN_293
- eggNOG:   COG0164
- HOGENOM:   HBG584843
- OMA:   RLGPTPI
- ProtClustDB:   PRK00015
- BioCyc:   CBLO291272:BPEN_293-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00052_B
- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337
- PANTHER:   PTHR10954

Pfam domain/function: PF01351 RNase_HII; SSF53098 RNaseH_fold

EC number: =3.1.26.4

Molecular weight: Translated: 24017; Mature: 23886

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTMLSIVQVKNNEIPKTLSIKKFKLIAGVDESGCGSLVGSVIAAAVILHSIQPISGLAD
CCHHEEEEEECCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
SKTLNKNKRLNLYKNIIKNALAWSIGYADVTEIDRSNILEARLLAMKRAVHNLSVKPDLI
CCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEE
LIDGNRSPGFTEIPYQCFNKGDARIAIISAASIIAKVTRDQDMIILDKQYPKYGFAQNKG
EEECCCCCCCCCCCHHHCCCCCCEEEEEHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
YPTFFHLKQLALYGPISQHRKSFAPVKHVISDINRKL
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TTMLSIVQVKNNEIPKTLSIKKFKLIAGVDESGCGSLVGSVIAAAVILHSIQPISGLAD
CHHEEEEEECCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
SKTLNKNKRLNLYKNIIKNALAWSIGYADVTEIDRSNILEARLLAMKRAVHNLSVKPDLI
CCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEE
LIDGNRSPGFTEIPYQCFNKGDARIAIISAASIIAKVTRDQDMIILDKQYPKYGFAQNKG
EEECCCCCCCCCCCHHHCCCCCCEEEEEHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
YPTFFHLKQLALYGPISQHRKSFAPVKHVISDINRKL
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA