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The map label for this gene is rbfA

Identifier: 71891892

GI number: 71891892

Start: 128361

End: 128720

Strand: Direct

Name: rbfA

Synonym: BPEN_109

Alternate gene names: 71891892

Gene position: 128361-128720 (Clockwise)

Preceding gene: 71891891

Following gene: 71891893

Centisome position: 16.21

GC content: 29.17

Gene sequence:

>360_bases
ATGTACTTTCAACATAGTTATCGTACTCAGCGTATTGCTAATGAAATACATAAAAAAGTTTCTATTATCTTGCAACATAA
GATCGATGATATTCGAATAGGTATACCTACTATTTCAGGAGTGCAAGTATCTAAAGATTTAAAAAATGCTAATATTTTTG
TGACTTTTATTAATAAAGAAGGTCCCGAGGAAATAGATACTGCTGTTATGATATTACAACGTGCTTCACGGTTTATTCGT
TTTTTATTAGCTAATACTATGTGTATACGTGTAGCGCCTATATTATTCTTTAAGTATGATTCTTCATTAATTGAAGGAGC
AAAAGTATGTAGTTTAATTTCTACTACAGAGAAATTATGA

Upstream 100 bases:

>100_bases
TCATGTATAACTGAGATTAGGTATGTTCATTATTAGATTATTCAATTGGGTGTTTATTTGTATGTGATATACATGTTTAT
TTTTTACGGAAGGTAGACAG

Downstream 100 bases:

>100_bases
TATAAAAGTTAAATTAATAATGCATTAAGGTTTCTAGTGAAGCGATATAAGAATGTAAGAAATAGAGATATTAATGGCAT
TTTATTATTAGATAAACCTA

Product: 30S ribosome-binding factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 119; Mature: 119

Protein sequence:

>119_residues
MYFQHSYRTQRIANEIHKKVSIILQHKIDDIRIGIPTISGVQVSKDLKNANIFVTFINKEGPEEIDTAVMILQRASRFIR
FLLANTMCIRVAPILFFKYDSSLIEGAKVCSLISTTEKL

Sequences:

>Translated_119_residues
MYFQHSYRTQRIANEIHKKVSIILQHKIDDIRIGIPTISGVQVSKDLKNANIFVTFINKEGPEEIDTAVMILQRASRFIR
FLLANTMCIRVAPILFFKYDSSLIEGAKVCSLISTTEKL
>Mature_119_residues
MYFQHSYRTQRIANEIHKKVSIILQHKIDDIRIGIPTISGVQVSKDLKNANIFVTFINKEGPEEIDTAVMILQRASRFIR
FLLANTMCIRVAPILFFKYDSSLIEGAKVCSLISTTEKL

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=112, Percent_Identity=41.9642857142857, Blast_Score=100, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_BLOPB (Q493T6)

Other databases:

- EMBL:   CP000016
- RefSeq:   YP_277622.1
- ProteinModelPortal:   Q493T6
- SMR:   Q493T6
- STRING:   Q493T6
- GeneID:   3563167
- GenomeReviews:   CP000016_GR
- KEGG:   bpn:BPEN_109
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   NTGARIE
- ProtClustDB:   CLSK280680
- BioCyc:   CBLO291272:BPEN_109-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 13615; Mature: 13615

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYFQHSYRTQRIANEIHKKVSIILQHKIDDIRIGIPTISGVQVSKDLKNANIFVTFINKE
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEECCCCCCCCEEEEEEECCC
GPEEIDTAVMILQRASRFIRFLLANTMCIRVAPILFFKYDSSLIEGAKVCSLISTTEKL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MYFQHSYRTQRIANEIHKKVSIILQHKIDDIRIGIPTISGVQVSKDLKNANIFVTFINKE
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEECCCCCCCCEEEEEEECCC
GPEEIDTAVMILQRASRFIRFLLANTMCIRVAPILFFKYDSSLIEGAKVCSLISTTEKL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA