| Definition | Candidatus Blochmannia pennsylvanicus str. BPEN, complete genome. |
|---|---|
| Accession | NC_007292 |
| Length | 791,654 |
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The map label for this gene is rpoD [H]
Identifier: 71891846
GI number: 71891846
Start: 67947
End: 69782
Strand: Reverse
Name: rpoD [H]
Synonym: BPEN_057
Alternate gene names: 71891846
Gene position: 69782-67947 (Counterclockwise)
Preceding gene: 71891847
Following gene: 71891843
Centisome position: 8.81
GC content: 33.01
Gene sequence:
>1836_bases ATGGAACATAACCCACAATCACAACTTAAGTTGCTCGTCACACTCGGGAAAGAACAAGGATACTTAACTTTTTCTGAAGT TAATGATCATTTGCCAGAAGACATCGTGGATCCTGGTCAAATCGAAAATATAATCCAAATGATGAATGATATGGGTATTC AAGTCATGGAAGAAGCCCCTAATTCCGACGAGTTTTTATTAATCGAACACACTCATTCTACTAATGATGAGGAAGATGCA ACAGAAGCAGCTGTGCAAGCATTGACTAACGTTGACTCAGAGTTAGGCAGGACAACTGATCCAGTACGAATGTATATGCG AGAAATGGGTACTGTAGAATTATTAACACGAGAAGGTGAAATAGATATTGCTAAAAGAATTGAAGACGGAATAAACCAAG TACAATGTTCAGTTTCTGAATATCCAGAAGCAATTACTTATCTTTTAGAACAATATAAACGCGTGGAAACCGGTGAAACA CGCCTTTCAGATTTAATTACGGGTTTTGTAGATCCTGATATAAATGAAAATATATCAATACACACAAACATCAATCACAT AACTGCTGAAGTTACAACTGAATCAATATCTGATGACGATGAAGAAGAAAATAATGATGAAAATAACATTGATCCAGAAA TAGCCTATGTAAAATTTACAGCACTACGTAATCAGTATGATATAACACGTAAAACAATTAAATATAATGGACGAAATCAC ATTAAATCATCAAAAGAAATTTTAAAACTCTCTGAAATATTTAAACAATTTAGATTAGTTCCAAAACAATTTGATTATTT AGTTAATAATATGCGCTCTATGATGGAACGAGTACGTAAACAAGAACGCTTAATTATGAAATTATGTGTCGAGATTAGTA AAATGCCAAAAAAAAATTTCATAGCGTTATTTTCAGGAAACCAAACGAATAAAACATGGTTTAATACAGCTTTATCTATG CACACATCATGGTCAGAAAAATTATATAAAGTTGATGAAGATGTGCAGAATAGTTTATCAAAATTACATCAAATTGAAAA AGAAACAGGACTAACAATAGAACAAGTGAAAGATATTAACCGTCGTATGTCTATTGGAGAAGCTAAAGCTCGAAGAGCTA AAAAAGAAATGGTTGAAGCTAATCTTCGTTTAGTTATATCTATTGCTAAAAAATATACAAATAGAGGATTACAATTTTTA GATTTAATACAAGAAGGTAATATTGGTTTAATGAAAGCCGTAGATAAATTTGAGTATCGTCGTGGTTATAAATTTTCCAC TTACGCTACTTGGTGGATTCGTCAAGCAATTACTAGATCGATAGCCGATCAAGCACGTACTATTCGAATCCCAGTCCATA TGATAGAAACTATTAATAAACTTAACCGAGTTTCTCGACAAATGCTACAAGAAATAGGACATGAACCAACGCCAGAAGAA CTAGCAGAGCGTATGCTTATGTCAGAAGATAAAATTAGAAAAGTGTTAAAAATTGCTAAAGAACCTATTTCTATGGAAAC TCCTGTAGGAGATGATGAAGATTCTCATCTTGGGGATTTTATTGAAGATACTAATCATGATTTACCTTTAGATTCAGCAA CTTCAGATAATTTACGTACTGCTACTCATGATATACTTTCTGGATTGACTCCAAGAGAAGCTAAAGTATTGCGTATGCGA TTTGGTATTGATATGAATACTGATCATACTCTAGAAGAGGTGGGTAAACAATTTGATGTAACCCGTGAACGTATTCGTCA AATAGAGGCGAAAGCTTTAAGAAAACTACGTCATCCTAGTCGATCTGAAATATTGCGAAGTTTTTTGGATGATTAA
Upstream 100 bases:
>100_bases TATTTTTGCAATCATTTACTACATATCATCGATAGATGGGATATTACACCACTATTAAACTTTTAAATATAAATATTATT TTGAAACGTGGGAGTATTTT
Downstream 100 bases:
>100_bases GTAAATATCATCTAAAAAGTATGATTACTCGTTTCTTTATAATCATGATACCGTATATAGCTTTATAAATACATTATTCA ACACATAACATCAAAAATAA
Product: RNA polymerase sigma-70 factor
Products: NA
Alternate protein names: Sigma-70 [H]
Number of amino acids: Translated: 611; Mature: 611
Protein sequence:
>611_residues MEHNPQSQLKLLVTLGKEQGYLTFSEVNDHLPEDIVDPGQIENIIQMMNDMGIQVMEEAPNSDEFLLIEHTHSTNDEEDA TEAAVQALTNVDSELGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVSEYPEAITYLLEQYKRVETGET RLSDLITGFVDPDINENISIHTNINHITAEVTTESISDDDEEENNDENNIDPEIAYVKFTALRNQYDITRKTIKYNGRNH IKSSKEILKLSEIFKQFRLVPKQFDYLVNNMRSMMERVRKQERLIMKLCVEISKMPKKNFIALFSGNQTNKTWFNTALSM HTSWSEKLYKVDEDVQNSLSKLHQIEKETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRVSRQMLQEIGHEPTPEE LAERMLMSEDKIRKVLKIAKEPISMETPVGDDEDSHLGDFIEDTNHDLPLDSATSDNLRTATHDILSGLTPREAKVLRMR FGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEILRSFLDD
Sequences:
>Translated_611_residues MEHNPQSQLKLLVTLGKEQGYLTFSEVNDHLPEDIVDPGQIENIIQMMNDMGIQVMEEAPNSDEFLLIEHTHSTNDEEDA TEAAVQALTNVDSELGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVSEYPEAITYLLEQYKRVETGET RLSDLITGFVDPDINENISIHTNINHITAEVTTESISDDDEEENNDENNIDPEIAYVKFTALRNQYDITRKTIKYNGRNH IKSSKEILKLSEIFKQFRLVPKQFDYLVNNMRSMMERVRKQERLIMKLCVEISKMPKKNFIALFSGNQTNKTWFNTALSM HTSWSEKLYKVDEDVQNSLSKLHQIEKETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRVSRQMLQEIGHEPTPEE LAERMLMSEDKIRKVLKIAKEPISMETPVGDDEDSHLGDFIEDTNHDLPLDSATSDNLRTATHDILSGLTPREAKVLRMR FGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEILRSFLDD >Mature_611_residues MEHNPQSQLKLLVTLGKEQGYLTFSEVNDHLPEDIVDPGQIENIIQMMNDMGIQVMEEAPNSDEFLLIEHTHSTNDEEDA TEAAVQALTNVDSELGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVSEYPEAITYLLEQYKRVETGET RLSDLITGFVDPDINENISIHTNINHITAEVTTESISDDDEEENNDENNIDPEIAYVKFTALRNQYDITRKTIKYNGRNH IKSSKEILKLSEIFKQFRLVPKQFDYLVNNMRSMMERVRKQERLIMKLCVEISKMPKKNFIALFSGNQTNKTWFNTALSM HTSWSEKLYKVDEDVQNSLSKLHQIEKETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRVSRQMLQEIGHEPTPEE LAERMLMSEDKIRKVLKIAKEPISMETPVGDDEDSHLGDFIEDTNHDLPLDSATSDNLRTATHDILSGLTPREAKVLRMR FGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEILRSFLDD
Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This is the primary sigma factor of this bacterium [H]
COG id: COG0568
COG function: function code K; DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sigma-70 factor family [H]
Homologues:
Organism=Escherichia coli, GI1789448, Length=619, Percent_Identity=78.3521809369952, Blast_Score=978, Evalue=0.0, Organism=Escherichia coli, GI1789098, Length=247, Percent_Identity=42.1052631578947, Blast_Score=213, Evalue=4e-56, Organism=Escherichia coli, GI1789871, Length=242, Percent_Identity=28.5123966942149, Blast_Score=91, Evalue=3e-19, Organism=Escherichia coli, GI1788231, Length=202, Percent_Identity=28.2178217821782, Blast_Score=67, Evalue=2e-12,
Paralogues:
None
Copy number: 700 (log & stationary phase) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014284 - InterPro: IPR000943 - InterPro: IPR009042 - InterPro: IPR007627 - InterPro: IPR007624 - InterPro: IPR007630 - InterPro: IPR007631 - InterPro: IPR007127 - InterPro: IPR013325 - InterPro: IPR013324 - InterPro: IPR012760 - InterPro: IPR011991 [H]
Pfam domain/function: PF04546 Sigma70_ner; PF03979 Sigma70_r1_1; PF00140 Sigma70_r1_2; PF04542 Sigma70_r2; PF04539 Sigma70_r3; PF04545 Sigma70_r4 [H]
EC number: NA
Molecular weight: Translated: 70695; Mature: 70695
Theoretical pI: Translated: 5.14; Mature: 5.14
Prosite motif: PS00715 SIGMA70_1 ; PS00716 SIGMA70_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEHNPQSQLKLLVTLGKEQGYLTFSEVNDHLPEDIVDPGQIENIIQMMNDMGIQVMEEAP CCCCHHHHHHHHHEECCCCCCEEHHHHHHCCCHHCCCCHHHHHHHHHHHHCCCHHHHCCC NSDEFLLIEHTHSTNDEEDATEAAVQALTNVDSELGRTTDPVRMYMREMGTVELLTREGE CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEECCCC IDIAKRIEDGINQVQCSVSEYPEAITYLLEQYKRVETGETRLSDLITGFVDPDINENISI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCEEE HTNINHITAEVTTESISDDDEEENNDENNIDPEIAYVKFTALRNQYDITRKTIKYNGRNH EECCCEEEEEEEHHHCCCCCCCCCCCCCCCCCCEEEEEHHHHHCHHHHHHHHHEECCCHH IKSSKEILKLSEIFKQFRLVPKQFDYLVNNMRSMMERVRKQERLIMKLCVEISKMPKKNF HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE IALFSGNQTNKTWFNTALSMHTSWSEKLYKVDEDVQNSLSKLHQIEKETGLTIEQVKDIN EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHH RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRVSRQMLQEIGHEPTPEE CCCCCHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH LAERMLMSEDKIRKVLKIAKEPISMETPVGDDEDSHLGDFIEDTNHDLPLDSATSDNLRT HHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHH ATHDILSGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS HHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC RSEILRSFLDD HHHHHHHHHCC >Mature Secondary Structure MEHNPQSQLKLLVTLGKEQGYLTFSEVNDHLPEDIVDPGQIENIIQMMNDMGIQVMEEAP CCCCHHHHHHHHHEECCCCCCEEHHHHHHCCCHHCCCCHHHHHHHHHHHHCCCHHHHCCC NSDEFLLIEHTHSTNDEEDATEAAVQALTNVDSELGRTTDPVRMYMREMGTVELLTREGE CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEECCCC IDIAKRIEDGINQVQCSVSEYPEAITYLLEQYKRVETGETRLSDLITGFVDPDINENISI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCEEE HTNINHITAEVTTESISDDDEEENNDENNIDPEIAYVKFTALRNQYDITRKTIKYNGRNH EECCCEEEEEEEHHHCCCCCCCCCCCCCCCCCCEEEEEHHHHHCHHHHHHHHHEECCCHH IKSSKEILKLSEIFKQFRLVPKQFDYLVNNMRSMMERVRKQERLIMKLCVEISKMPKKNF HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE IALFSGNQTNKTWFNTALSMHTSWSEKLYKVDEDVQNSLSKLHQIEKETGLTIEQVKDIN EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHH RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRVSRQMLQEIGHEPTPEE CCCCCHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH LAERMLMSEDKIRKVLKIAKEPISMETPVGDDEDSHLGDFIEDTNHDLPLDSATSDNLRT HHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHH ATHDILSGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS HHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC RSEILRSFLDD HHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11677608; 12644504 [H]