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The map label for this gene is yidZ [H]

Identifier: 71891830

GI number: 71891830

Start: 48217

End: 49116

Strand: Reverse

Name: yidZ [H]

Synonym: BPEN_038

Alternate gene names: 71891830

Gene position: 49116-48217 (Counterclockwise)

Preceding gene: 71891834

Following gene: 71891827

Centisome position: 6.2

GC content: 28.56

Gene sequence:

>900_bases
ATGAATAATTTTGATTTCAATTTACTAATAATTCTCAATGCACTACTCGAAGAGTATAGCGTAAACTTAGCGGCAAAAAA
ATTAAATGTCACTGCTCCAGCTATTAGTAAATCTCTCAACAAAATACGCATTCTATTTAATGATCAAATTTTAGTACGTA
GTGGAACTAAATTAATCCCTACGCCTAAAGCAATCTCTCTAAAAGAAAATATTAAAGAATTAGTGAACCGTATTGAATCA
ATATTCAACAACAACATAGTATTTGAACCTAAAATTACCACTATATCATTTACTATTGCATCGAACAACGCTATTCTTTT
TATCCTTAATACCATCTTATTTCAAAAAATGAAAGATAAAGCTCCCAAAGCATTTATTCATTTAGTAAATGACTCAGACT
ACGATGATAATTTTTTAAGAAACCATACCATAGATTTATATATAGGAGAAATGCGCGCACTTAACCCAGAAATAACTATT
CGAACTATCTACGTATCCAAATGTTGTATAATATCTCGGAATCATCATCCTATTTTGTCTCAAACTAAAAATATGGATAA
TTTATTAAAATATCAATTCATTAAAACCAAACATGAGTATTTAACCAACTCCGATGAACATAGTAAATATTTTTGGTCGG
AGCGTAACTTAATTGGTATTACCCCAGAATATATCACTACTGTAAACGCTATAATTCATTCAGATGCACTAGCGATAATA
CCAGAATTTATATTAACAATGATACAAAAATTAAATATACCAATCACACATTTTAATACTGATTTAAATTTAGGAAAAAA
AAGCATTATTCAAGCATGGCATTCTAAACACAACCGCTCTTCCGCTCATAAATGGCTACGAGAATTTACTAAAAAAATAT
TTTTAACTAGTATAGTATAA

Upstream 100 bases:

>100_bases
GACGAGCATATTATTCTTAAATACATTTAATATATTTTACTCTTGTATATTTATACATTATAATACAGGGTAAAATAAAT
ATTACATAAAAATTTATTAT

Downstream 100 bases:

>100_bases
TAAAATTTATTAAAAATTTTTATGTTCACAAAATTATGAATATATCCGCATAATAATAACACTAATTACCAAAAATATTA
TACTGGGTGATATTGATCCA

Product: transcriptional regulator

Products: NA

Alternate protein names: Symbiotic regulator homolog 1 [H]

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MNNFDFNLLIILNALLEEYSVNLAAKKLNVTAPAISKSLNKIRILFNDQILVRSGTKLIPTPKAISLKENIKELVNRIES
IFNNNIVFEPKITTISFTIASNNAILFILNTILFQKMKDKAPKAFIHLVNDSDYDDNFLRNHTIDLYIGEMRALNPEITI
RTIYVSKCCIISRNHHPILSQTKNMDNLLKYQFIKTKHEYLTNSDEHSKYFWSERNLIGITPEYITTVNAIIHSDALAII
PEFILTMIQKLNIPITHFNTDLNLGKKSIIQAWHSKHNRSSAHKWLREFTKKIFLTSIV

Sequences:

>Translated_299_residues
MNNFDFNLLIILNALLEEYSVNLAAKKLNVTAPAISKSLNKIRILFNDQILVRSGTKLIPTPKAISLKENIKELVNRIES
IFNNNIVFEPKITTISFTIASNNAILFILNTILFQKMKDKAPKAFIHLVNDSDYDDNFLRNHTIDLYIGEMRALNPEITI
RTIYVSKCCIISRNHHPILSQTKNMDNLLKYQFIKTKHEYLTNSDEHSKYFWSERNLIGITPEYITTVNAIIHSDALAII
PEFILTMIQKLNIPITHFNTDLNLGKKSIIQAWHSKHNRSSAHKWLREFTKKIFLTSIV
>Mature_299_residues
MNNFDFNLLIILNALLEEYSVNLAAKKLNVTAPAISKSLNKIRILFNDQILVRSGTKLIPTPKAISLKENIKELVNRIES
IFNNNIVFEPKITTISFTIASNNAILFILNTILFQKMKDKAPKAFIHLVNDSDYDDNFLRNHTIDLYIGEMRALNPEITI
RTIYVSKCCIISRNHHPILSQTKNMDNLLKYQFIKTKHEYLTNSDEHSKYFWSERNLIGITPEYITTVNAIIHSDALAII
PEFILTMIQKLNIPITHFNTDLNLGKKSIIQAWHSKHNRSSAHKWLREFTKKIFLTSIV

Specific function: Transcriptional activator that regulates the expression of genes involved in symbiosis. Among other targets it acts on the nolWBTUV operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790147, Length=305, Percent_Identity=25.9016393442623, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI87081684, Length=300, Percent_Identity=21, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87081766, Length=245, Percent_Identity=26.530612244898, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1786820, Length=253, Percent_Identity=22.5296442687747, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34551; Mature: 34551

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNFDFNLLIILNALLEEYSVNLAAKKLNVTAPAISKSLNKIRILFNDQILVRSGTKLIP
CCCCCCHHHHHHHHHHHHHCCCCEEHEEECCHHHHHHCHHEEEEEECCEEEEECCCEECC
TPKAISLKENIKELVNRIESIFNNNIVFEPKITTISFTIASNNAILFILNTILFQKMKDK
CCCCCCHHHHHHHHHHHHHHHHCCCEEEECEEEEEEEEEECCCEEEEHHHHHHHHHHHCC
APKAFIHLVNDSDYDDNFLRNHTIDLYIGEMRALNPEITIRTIYVSKCCIISRNHHPILS
CCEEEEEEECCCCCCCCHHHCCEEEEEECCCCCCCCCEEEEEEEEEEEEEEECCCCCHHH
QTKNMDNLLKYQFIKTKHEYLTNSDEHSKYFWSERNLIGITPEYITTVNAIIHSDALAII
HHCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCEEECCHHHHHHHHHHHHCCHHHHH
PEFILTMIQKLNIPITHFNTDLNLGKKSIIQAWHSKHNRSSAHKWLREFTKKIFLTSIV
HHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNNFDFNLLIILNALLEEYSVNLAAKKLNVTAPAISKSLNKIRILFNDQILVRSGTKLIP
CCCCCCHHHHHHHHHHHHHCCCCEEHEEECCHHHHHHCHHEEEEEECCEEEEECCCEECC
TPKAISLKENIKELVNRIESIFNNNIVFEPKITTISFTIASNNAILFILNTILFQKMKDK
CCCCCCHHHHHHHHHHHHHHHHCCCEEEECEEEEEEEEEECCCEEEEHHHHHHHHHHHCC
APKAFIHLVNDSDYDDNFLRNHTIDLYIGEMRALNPEITIRTIYVSKCCIISRNHHPILS
CCEEEEEEECCCCCCCCHHHCCEEEEEECCCCCCCCCEEEEEEEEEEEEEEECCCCCHHH
QTKNMDNLLKYQFIKTKHEYLTNSDEHSKYFWSERNLIGITPEYITTVNAIIHSDALAII
HHCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCEEECCHHHHHHHHHHHHCCHHHHH
PEFILTMIQKLNIPITHFNTDLNLGKKSIIQAWHSKHNRSSAHKWLREFTKKIFLTSIV
HHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]