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The map label for this gene is rfbD [H]

Identifier: 68537131

GI number: 68537131

Start: 2387127

End: 2388014

Strand: Direct

Name: rfbD [H]

Synonym: jk2036

Alternate gene names: 68537131

Gene position: 2387127-2388014 (Clockwise)

Preceding gene: 68537128

Following gene: 68537132

Centisome position: 96.94

GC content: 63.85

Gene sequence:

>888_bases
ATGTCACAGAAAATGCCAGAGGCCGCGGATCTTCAGCGGATCACCGCCGCGGCAGACGGCGACATCCCAGCTAGCAACTC
CCAAACCTTCGGCGCCGCGTGGGCGGACCTGAAGAAGGGGCTTGCGCAGCGCGAACTTTGGCTCGCGCTCGGCTGGCAGG
ACATCAAACAACGCTACCGGCGCAGTACCCTCGGGCCCCTGTGGATCACCATCGCCACCGGCGTAATGGCCCTGGCCCTC
GGCCTGCTGTACAGCCTGCTGTTCCAGCAAGACCTGGCGAGCTTCCTGCCGCACGTCGCCGTCGGCCTGATCCTGTGGGG
CTTCATTTCGGGCTGCATCAAGGACGGCTCGGAAGTATTCATCGCCAACGAAGGGCTGATCAAGCAGCTGCCGTCCGCCC
TGTCCGTGCACGTATACCGACTGGTGTGGAAACAATTCCTCTTCCTACTGCACAACCTCGTGATCTGGCTCGTGCTGCTG
GCCGTGTTCCGCCCATCGCTCGGCTGGGAAGTGCTGCTCGTCGTGCCCGCCATGGCCCTCATGATCGCCAACGGCATCTG
GGTGACCATGTTCTTCGGCATCATCGCCACCCGGTTCCGCGACGTAGCCCCGCTGCTGGATTCGCTCGTCCAACTGGCCT
TTTATATGACGCCCATCGTCTGGACCACCAAAACCCTGCGCGACCAAGGCGGGGCAGTGGCCGAGCGAGCGAAAATTGCG
GAGATCAACCCGCTGTACCACTACCTGGAGATCGTCCGCGGGCCGATGATCGGCGAGCCAGTCCCCGCCTACCACTGGGG
CATCGTGGGCGTGCTGACCGTGCTGGGGCTTGCGCTGGCCCTGCTGGTGATGCGCCGCTGGCGCTTCCGCGTGAGCTACT
GGGTTTAG

Upstream 100 bases:

>100_bases
GACTCGCCGGAAATAGGAGGTGTGGGCGTCACAAAGTAAAATAGACTGCCTCAAAGCAACAGCAACGAAAACGCGAAGCA
GTAACAAGAAGCAGGACCAC

Downstream 100 bases:

>100_bases
GAAGCTACAGGGTTTAGGAGATGACATGGTTTCGATTGACACTTACGACGCTTGCGTAGACTTCCCCATCTTCGATGCGA
AGACCCGCTCCATGAAGCAG

Product: putative ABC transport system, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 294

Protein sequence:

>295_residues
MSQKMPEAADLQRITAAADGDIPASNSQTFGAAWADLKKGLAQRELWLALGWQDIKQRYRRSTLGPLWITIATGVMALAL
GLLYSLLFQQDLASFLPHVAVGLILWGFISGCIKDGSEVFIANEGLIKQLPSALSVHVYRLVWKQFLFLLHNLVIWLVLL
AVFRPSLGWEVLLVVPAMALMIANGIWVTMFFGIIATRFRDVAPLLDSLVQLAFYMTPIVWTTKTLRDQGGAVAERAKIA
EINPLYHYLEIVRGPMIGEPVPAYHWGIVGVLTVLGLALALLVMRRWRFRVSYWV

Sequences:

>Translated_295_residues
MSQKMPEAADLQRITAAADGDIPASNSQTFGAAWADLKKGLAQRELWLALGWQDIKQRYRRSTLGPLWITIATGVMALAL
GLLYSLLFQQDLASFLPHVAVGLILWGFISGCIKDGSEVFIANEGLIKQLPSALSVHVYRLVWKQFLFLLHNLVIWLVLL
AVFRPSLGWEVLLVVPAMALMIANGIWVTMFFGIIATRFRDVAPLLDSLVQLAFYMTPIVWTTKTLRDQGGAVAERAKIA
EINPLYHYLEIVRGPMIGEPVPAYHWGIVGVLTVLGLALALLVMRRWRFRVSYWV
>Mature_294_residues
SQKMPEAADLQRITAAADGDIPASNSQTFGAAWADLKKGLAQRELWLALGWQDIKQRYRRSTLGPLWITIATGVMALALG
LLYSLLFQQDLASFLPHVAVGLILWGFISGCIKDGSEVFIANEGLIKQLPSALSVHVYRLVWKQFLFLLHNLVIWLVLLA
VFRPSLGWEVLLVVPAMALMIANGIWVTMFFGIIATRFRDVAPLLDSLVQLAFYMTPIVWTTKTLRDQGGAVAERAKIAE
INPLYHYLEIVRGPMIGEPVPAYHWGIVGVLTVLGLALALLVMRRWRFRVSYWV

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbE [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 32998; Mature: 32866

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQKMPEAADLQRITAAADGDIPASNSQTFGAAWADLKKGLAQRELWLALGWQDIKQRYR
CCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
RSTLGPLWITIATGVMALALGLLYSLLFQQDLASFLPHVAVGLILWGFISGCIKDGSEVF
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
IANEGLIKQLPSALSVHVYRLVWKQFLFLLHNLVIWLVLLAVFRPSLGWEVLLVVPAMAL
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
MIANGIWVTMFFGIIATRFRDVAPLLDSLVQLAFYMTPIVWTTKTLRDQGGAVAERAKIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
EINPLYHYLEIVRGPMIGEPVPAYHWGIVGVLTVLGLALALLVMRRWRFRVSYWV
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SQKMPEAADLQRITAAADGDIPASNSQTFGAAWADLKKGLAQRELWLALGWQDIKQRYR
CCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
RSTLGPLWITIATGVMALALGLLYSLLFQQDLASFLPHVAVGLILWGFISGCIKDGSEVF
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
IANEGLIKQLPSALSVHVYRLVWKQFLFLLHNLVIWLVLLAVFRPSLGWEVLLVVPAMAL
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
MIANGIWVTMFFGIIATRFRDVAPLLDSLVQLAFYMTPIVWTTKTLRDQGGAVAERAKIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
EINPLYHYLEIVRGPMIGEPVPAYHWGIVGVLTVLGLALALLVMRRWRFRVSYWV
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7692217 [H]