| Definition | Corynebacterium jeikeium K411, complete genome. |
|---|---|
| Accession | NC_007164 |
| Length | 2,462,499 |
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The map label for this gene is uvrA2 [H]
Identifier: 68536388
GI number: 68536388
Start: 1539194
End: 1541965
Strand: Direct
Name: uvrA2 [H]
Synonym: jk1304
Alternate gene names: 68536388
Gene position: 1539194-1541965 (Clockwise)
Preceding gene: 68536387
Following gene: 68536397
Centisome position: 62.51
GC content: 63.67
Gene sequence:
>2772_bases ATGCATGTTTCACACCTCCAGCCCGATGCAATGATCCGCGTCCGTGACGCACACTTGCGGAACCTCAAGCACCAGGACGT TTCGCTGCCCCGTAACGCCCTGGTGGCGGTGACGGGCGTATCTGGGTCGGGAAAGTCCTCGCTGGCGTTTGGCACACTGC ACGGTGAGGCTCAGCGGCGGTATCTAGAGTCCGTTGCGCCATTCGCCCGCCGACTGATCGGCGGGGCCGTCGACCCACGC GTGGGGTCCGTTGAAGGGCTCCCGCCGACGGTCGCATTACGACAGGGGGCGCAAGCGGGCGGGGCGCGTTCGACGGTGGG AACCGTATCAAACCTGTCGAACACGATCCGCCTACTGTATTCGCGTTGCGGCCAGTACCCGGCGGGCGTTCGCGAACGCC ACGGCGGGCGACTGGATTCAGATAGCTTCTCCCCTAATACGACGGCGGGAATGTGCCCAGAGTGTCAGGGCACGGGAGTC GTGCATGAGCCGACGGAGGAGTCCATGGTCCCAGATCCGTCGCTTTCCATCGACGAAGGGGCTATCGCCGCTTGGCCCGG CGCGTGGTTGGGGAAGAATTTCCGCGATATCGTCGCGGAGCTCGGTTTCCCTATGGACATTCCGTGGCGGGAGATCCCAA AGGCCGACCGAGATTGGATCCTTTACACCGATGAGCGGCCGGTGGTGACGATTCACCCTCACCGGGGTGCGGATCAGATT CAGCGGACGTATGAGGGCACTTGGCGTTCGGTGGCCTCTTATCTGCGGAAGACGTTGGCAGAGACGGGTTCCGATTCCAC GCGACGCCGCGTCTTGTCGTTTATGAAGTCTTCCCGCTGTGGGGTGTGCGATGGTCGTCGACTTATTGTCGACGCCCTTT CCGTGGGTTACCTCGGCCTTCCCATCGATAGCCTTGGGGCGCTTCCTCTGGAAGACGTTCTCTCTCGCTTCGCTGAGCGC CGTGCCTCTATGCCCGCAGACACTGCCCGCGGACAGGCCGATATCTACGCCACAACTGGGCGAAGACTAGCGCAGCACGC GCCAGCCGGCGGGGATTCCAGCGCGGCCGCGGAAGCGGAGCGAATCCTGCTGAGCCAGGCGATTCCTACGCTGGAGTCAG TGGTGGATCTCGGTTTGGGGCATCTGAGCCTGGATCGTGCCACGTCTACCCTGTCGGCAGGTGAGCTGCAGCGTTTGCGG TTGGCATCTCAGCTGCGGTCGGGGCTTTTCGGAGTGGCATACGTTTTGGACGAGCCGTCCGCGGGCTTGCACCCTGAGGA GCGCCGCGCGGTAATGCGGCTGATTCGCGGTTTCCTGGACGCGGGCAATAGTGTCCTGCTGGTGGAGCACGACATGCACC TGGTGGCGGAGGCCGATTGGATCGTCGACGTCGGCCCGGGCGCGGGCGAACTCGGCGGCAAAATCCTCTACTCCGGCCCA GCCGCACCTTCAACCGCTACCGCTAACCACAACACTGCGGCAAACGAGGCCCCGGCGAGAAGTTCCAGCGCGAACGCAGA TGCGGGTCTACGCGCCAACCAGAGCGCCAACGGCGCTGGCGCCGCTGAAGCCGACCGTGCTAACACCAGCCATTGCCCTG ACACTGGCGGCGACGGCGGCTCAGACGTCGCCGGCGGCGCGGGCCTGGCCGGGCTGGATTGCCCCACCGGGCGGGCCCTC GCCGCCGGACCGCTGAAGTTAACCACCGACGCCGAAGCGCGCACCCCCTCCGGCACACTCGCCCTCACAGATATCAATGC GCGCACCCTGAACAGCCTCGACGTGGATTTTGGCCTCGGCACGTTTACCGCGATTACGGGAGTATCGGGTTCCGGCAAGT CCACACTCCTGCACACGCTAGCCAGCTCCCTGCGCGACCAAGTGAAGACGACGGTCGACGACGGAGAAATGGCGTCAAGA GGTACAAGCTCCGCAGAAAAAGAAGGCTCCGCAGAAACAGCAACGGCCGAACTCAACGCAGACATCGCCGTCAACCGGTT GGTACAGATCTCCCAGAAGCCCATCGGGCGGACACCTAGATCTTGCCTAGCAACCTACACCGGACTATTCGACCGTGTAC GGAAGCTCTTCGCGCAGACCGACGAAGCAAAGCGGCGTGGCTGGACAGTCTCCCGCTTCTCGTACAACGTCACCCAAGGA CGCTGTCCCACCTGCAGCGGAGAAGGACAAATTGAAGTGGAGTTGGTGTTCCTCCCTGGCAGCTATACTCCCTGCCCAGA CTGTCACGGCGCACGCTACAACGCTGAAACGCTAGAAGTCACTTGGAACGGCCGGACGATTGCGGACGTGTTGGAGCTAA CCGTAGCTGAGGCCCGGGAGGTCTTCGCTGAGGAAGGGGCTATCGCCCGGGCTCTGCGGGCTCTGTCGGCAGTAGGGTTG GATTACCTCCGCCTCGGTCAGCCGGCTACGGAGCTATCCGGCGGCGAGGCCCAGCGGATCAAATTGGCCACGGAACTGCA GCGAGCTCAGCGGGGACACACTGTGTACCTCATGGATGAGCCGACCACCGGCCTGCACCCCGCAGACGTGGATTTGCTGA TGACGGAACTCCAGCGGTTGGTCAACAACGGCAACACCGTGGTGGTTGTGGAGCATGACATGCGGGTTGCCGCACAGGCA GACCGGGTTCTGGAAATGGGCCCGGGAGCCGGCGCGCGGGGTGGTCAGGTTGTGGCAGACGGAAGCCCCGCCACAGTGGC TCAAACGGACACCGCGACGGGGCGAGTATTAGCGGAAAGGAGCTCTAGCTAG
Upstream 100 bases:
>100_bases TTATGCCGCGATGGCAACCTCCGCTGACCGCGGAGCCGTCCGCGAAGTGAAGTAGCCACCCCGCCCTGCCGCCGGTGCGC GGGGCCGTAGGGTGGAGGGC
Downstream 100 bases:
>100_bases TTGAACGGGTTTCCTCCGCCGACGCCGAGCCAAAGCGCGGCGGTAGCCGCCGCTGCGACGACAAAGAAGATCCATGCAGA AGCCAACGGTCGGGTTGCCC
Product: excinuclease ABC, subunit A
Products: NA
Alternate protein names: UvrA protein; Excinuclease ABC subunit A [H]
Number of amino acids: Translated: 923; Mature: 923
Protein sequence:
>923_residues MHVSHLQPDAMIRVRDAHLRNLKHQDVSLPRNALVAVTGVSGSGKSSLAFGTLHGEAQRRYLESVAPFARRLIGGAVDPR VGSVEGLPPTVALRQGAQAGGARSTVGTVSNLSNTIRLLYSRCGQYPAGVRERHGGRLDSDSFSPNTTAGMCPECQGTGV VHEPTEESMVPDPSLSIDEGAIAAWPGAWLGKNFRDIVAELGFPMDIPWREIPKADRDWILYTDERPVVTIHPHRGADQI QRTYEGTWRSVASYLRKTLAETGSDSTRRRVLSFMKSSRCGVCDGRRLIVDALSVGYLGLPIDSLGALPLEDVLSRFAER RASMPADTARGQADIYATTGRRLAQHAPAGGDSSAAAEAERILLSQAIPTLESVVDLGLGHLSLDRATSTLSAGELQRLR LASQLRSGLFGVAYVLDEPSAGLHPEERRAVMRLIRGFLDAGNSVLLVEHDMHLVAEADWIVDVGPGAGELGGKILYSGP AAPSTATANHNTAANEAPARSSSANADAGLRANQSANGAGAAEADRANTSHCPDTGGDGGSDVAGGAGLAGLDCPTGRAL AAGPLKLTTDAEARTPSGTLALTDINARTLNSLDVDFGLGTFTAITGVSGSGKSTLLHTLASSLRDQVKTTVDDGEMASR GTSSAEKEGSAETATAELNADIAVNRLVQISQKPIGRTPRSCLATYTGLFDRVRKLFAQTDEAKRRGWTVSRFSYNVTQG RCPTCSGEGQIEVELVFLPGSYTPCPDCHGARYNAETLEVTWNGRTIADVLELTVAEAREVFAEEGAIARALRALSAVGL DYLRLGQPATELSGGEAQRIKLATELQRAQRGHTVYLMDEPTTGLHPADVDLLMTELQRLVNNGNTVVVVEHDMRVAAQA DRVLEMGPGAGARGGQVVADGSPATVAQTDTATGRVLAERSSS
Sequences:
>Translated_923_residues MHVSHLQPDAMIRVRDAHLRNLKHQDVSLPRNALVAVTGVSGSGKSSLAFGTLHGEAQRRYLESVAPFARRLIGGAVDPR VGSVEGLPPTVALRQGAQAGGARSTVGTVSNLSNTIRLLYSRCGQYPAGVRERHGGRLDSDSFSPNTTAGMCPECQGTGV VHEPTEESMVPDPSLSIDEGAIAAWPGAWLGKNFRDIVAELGFPMDIPWREIPKADRDWILYTDERPVVTIHPHRGADQI QRTYEGTWRSVASYLRKTLAETGSDSTRRRVLSFMKSSRCGVCDGRRLIVDALSVGYLGLPIDSLGALPLEDVLSRFAER RASMPADTARGQADIYATTGRRLAQHAPAGGDSSAAAEAERILLSQAIPTLESVVDLGLGHLSLDRATSTLSAGELQRLR LASQLRSGLFGVAYVLDEPSAGLHPEERRAVMRLIRGFLDAGNSVLLVEHDMHLVAEADWIVDVGPGAGELGGKILYSGP AAPSTATANHNTAANEAPARSSSANADAGLRANQSANGAGAAEADRANTSHCPDTGGDGGSDVAGGAGLAGLDCPTGRAL AAGPLKLTTDAEARTPSGTLALTDINARTLNSLDVDFGLGTFTAITGVSGSGKSTLLHTLASSLRDQVKTTVDDGEMASR GTSSAEKEGSAETATAELNADIAVNRLVQISQKPIGRTPRSCLATYTGLFDRVRKLFAQTDEAKRRGWTVSRFSYNVTQG RCPTCSGEGQIEVELVFLPGSYTPCPDCHGARYNAETLEVTWNGRTIADVLELTVAEAREVFAEEGAIARALRALSAVGL DYLRLGQPATELSGGEAQRIKLATELQRAQRGHTVYLMDEPTTGLHPADVDLLMTELQRLVNNGNTVVVVEHDMRVAAQA DRVLEMGPGAGARGGQVVADGSPATVAQTDTATGRVLAERSSS >Mature_923_residues MHVSHLQPDAMIRVRDAHLRNLKHQDVSLPRNALVAVTGVSGSGKSSLAFGTLHGEAQRRYLESVAPFARRLIGGAVDPR VGSVEGLPPTVALRQGAQAGGARSTVGTVSNLSNTIRLLYSRCGQYPAGVRERHGGRLDSDSFSPNTTAGMCPECQGTGV VHEPTEESMVPDPSLSIDEGAIAAWPGAWLGKNFRDIVAELGFPMDIPWREIPKADRDWILYTDERPVVTIHPHRGADQI QRTYEGTWRSVASYLRKTLAETGSDSTRRRVLSFMKSSRCGVCDGRRLIVDALSVGYLGLPIDSLGALPLEDVLSRFAER RASMPADTARGQADIYATTGRRLAQHAPAGGDSSAAAEAERILLSQAIPTLESVVDLGLGHLSLDRATSTLSAGELQRLR LASQLRSGLFGVAYVLDEPSAGLHPEERRAVMRLIRGFLDAGNSVLLVEHDMHLVAEADWIVDVGPGAGELGGKILYSGP AAPSTATANHNTAANEAPARSSSANADAGLRANQSANGAGAAEADRANTSHCPDTGGDGGSDVAGGAGLAGLDCPTGRAL AAGPLKLTTDAEARTPSGTLALTDINARTLNSLDVDFGLGTFTAITGVSGSGKSTLLHTLASSLRDQVKTTVDDGEMASR GTSSAEKEGSAETATAELNADIAVNRLVQISQKPIGRTPRSCLATYTGLFDRVRKLFAQTDEAKRRGWTVSRFSYNVTQG RCPTCSGEGQIEVELVFLPGSYTPCPDCHGARYNAETLEVTWNGRTIADVLELTVAEAREVFAEEGAIARALRALSAVGL DYLRLGQPATELSGGEAQRIKLATELQRAQRGHTVYLMDEPTTGLHPADVDLLMTELQRLVNNGNTVVVVEHDMRVAAQA DRVLEMGPGAGARGGQVVADGSPATVAQTDTATGRVLAERSSS
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion h
COG id: COG0178
COG function: function code L; Excinuclease ATPase subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Escherichia coli, GI2367343, Length=391, Percent_Identity=43.4782608695652, Blast_Score=285, Evalue=7e-78,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR013815 - InterPro: IPR003593 - InterPro: IPR004602 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 97406; Mature: 97406
Theoretical pI: Translated: 6.09; Mature: 6.09
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHVSHLQPDAMIRVRDAHLRNLKHQDVSLPRNALVAVTGVSGSGKSSLAFGTLHGEAQRR CCCCCCCCCCEEEEEHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCHHHHH YLESVAPFARRLIGGAVDPRVGSVEGLPPTVALRQGAQAGGARSTVGTVSNLSNTIRLLY HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH SRCGQYPAGVRERHGGRLDSDSFSPNTTAGMCPECQGTGVVHEPTEESMVPDPSLSIDEG HHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCHHCCCCCCCCCCCCC AIAAWPGAWLGKNFRDIVAELGFPMDIPWREIPKADRDWILYTDERPVVTIHPHRGADQI CEEECCCHHHCCCHHHHHHHCCCCCCCCHHHCCCCCCCEEEEECCCCEEEECCCCCHHHH QRTYEGTWRSVASYLRKTLAETGSDSTRRRVLSFMKSSRCGVCDGRRLIVDALSVGYLGL HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCEECC PIDSLGALPLEDVLSRFAERRASMPADTARGQADIYATTGRRLAQHAPAGGDSSAAAEAE CHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHCCCCCCCHHHHHHH RILLSQAIPTLESVVDLGLGHLSLDRATSTLSAGELQRLRLASQLRSGLFGVAYVLDEPS HHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC AGLHPEERRAVMRLIRGFLDAGNSVLLVEHDMHLVAEADWIVDVGPGAGELGGKILYSGP CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCEEEECCCCCHHHCCEEEECCC AAPSTATANHNTAANEAPARSSSANADAGLRANQSANGAGAAEADRANTSHCPDTGGDGG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SDVAGGAGLAGLDCPTGRALAAGPLKLTTDAEARTPSGTLALTDINARTLNSLDVDFGLG CCCCCCCCCCCCCCCCCCCEECCCEEEECCCCCCCCCCCEEEEECCCHHCCCCCCCCCCC TFTAITGVSGSGKSTLLHTLASSLRDQVKTTVDDGEMASRGTSSAEKEGSAETATAELNA HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHCCCCCCEEEECCC DIAVNRLVQISQKPIGRTPRSCLATYTGLFDRVRKLFAQTDEAKRRGWTVSRFSYNVTQG HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCEEEEEEEECCCC RCPTCSGEGQIEVELVFLPGSYTPCPDCHGARYNAETLEVTWNGRTIADVLELTVAEARE CCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHH VFAEEGAIARALRALSAVGLDYLRLGQPATELSGGEAQRIKLATELQRAQRGHTVYLMDE HHHHCCHHHHHHHHHHHHCHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEEC PTTGLHPADVDLLMTELQRLVNNGNTVVVVEHDMRVAAQADRVLEMGPGAGARGGQVVAD CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCEEEEC GSPATVAQTDTATGRVLAERSSS CCCCEEEECCCCCCCEECCCCCC >Mature Secondary Structure MHVSHLQPDAMIRVRDAHLRNLKHQDVSLPRNALVAVTGVSGSGKSSLAFGTLHGEAQRR CCCCCCCCCCEEEEEHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCHHHHH YLESVAPFARRLIGGAVDPRVGSVEGLPPTVALRQGAQAGGARSTVGTVSNLSNTIRLLY HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH SRCGQYPAGVRERHGGRLDSDSFSPNTTAGMCPECQGTGVVHEPTEESMVPDPSLSIDEG HHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCHHCCCCCCCCCCCCC AIAAWPGAWLGKNFRDIVAELGFPMDIPWREIPKADRDWILYTDERPVVTIHPHRGADQI CEEECCCHHHCCCHHHHHHHCCCCCCCCHHHCCCCCCCEEEEECCCCEEEECCCCCHHHH QRTYEGTWRSVASYLRKTLAETGSDSTRRRVLSFMKSSRCGVCDGRRLIVDALSVGYLGL HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCEECC PIDSLGALPLEDVLSRFAERRASMPADTARGQADIYATTGRRLAQHAPAGGDSSAAAEAE CHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHCCCCCCCHHHHHHH RILLSQAIPTLESVVDLGLGHLSLDRATSTLSAGELQRLRLASQLRSGLFGVAYVLDEPS HHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC AGLHPEERRAVMRLIRGFLDAGNSVLLVEHDMHLVAEADWIVDVGPGAGELGGKILYSGP CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCEEEECCCCCHHHCCEEEECCC AAPSTATANHNTAANEAPARSSSANADAGLRANQSANGAGAAEADRANTSHCPDTGGDGG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SDVAGGAGLAGLDCPTGRALAAGPLKLTTDAEARTPSGTLALTDINARTLNSLDVDFGLG CCCCCCCCCCCCCCCCCCCEECCCEEEECCCCCCCCCCCEEEEECCCHHCCCCCCCCCCC TFTAITGVSGSGKSTLLHTLASSLRDQVKTTVDDGEMASRGTSSAEKEGSAETATAELNA HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHCCCCCCEEEECCC DIAVNRLVQISQKPIGRTPRSCLATYTGLFDRVRKLFAQTDEAKRRGWTVSRFSYNVTQG HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCEEEEEEEECCCC RCPTCSGEGQIEVELVFLPGSYTPCPDCHGARYNAETLEVTWNGRTIADVLELTVAEARE CCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHH VFAEEGAIARALRALSAVGLDYLRLGQPATELSGGEAQRIKLATELQRAQRGHTVYLMDE HHHHCCHHHHHHHHHHHHCHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEEC PTTGLHPADVDLLMTELQRLVNNGNTVVVVEHDMRVAAQADRVLEMGPGAGARGGQVVAD CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCEEEEC GSPATVAQTDTATGRVLAERSSS CCCCEEEECCCCCCCEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2549377 [H]