| Definition | Corynebacterium jeikeium K411, complete genome. |
|---|---|
| Accession | NC_007164 |
| Length | 2,462,499 |
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The map label for this gene is dtd [H]
Identifier: 68536170
GI number: 68536170
Start: 1285760
End: 1286230
Strand: Direct
Name: dtd [H]
Synonym: jk1093
Alternate gene names: 68536170
Gene position: 1285760-1286230 (Clockwise)
Preceding gene: 68536169
Following gene: 68536171
Centisome position: 52.21
GC content: 58.6
Gene sequence:
>471_bases ATGAAAGCGGTTGTGAGCACTGTCAGTAGTGCGGAGGTAACCGTAGACGGTGAGGTCGTCGGGTCAGTACAAGGCCCTGC ATTATTGGCGCTTGTCGGCATCGGTACAGGTGACATAGAAGACGCGAGTGTGACGGACGCGGCTGTGGAGAAGATGGCTC GGAAGCTCGCCGAATTGCGTCTGCTACCGGCAGTCGGCGAGCCATGGGATAGCCCGCGCAATCATTCAGTCGAGGAGGTC GGCGGACAAGTCCTGTTGGTCAGCCAGTTCACGCTCATGGGGGAAACGAAGAAAGGGCGGAGGCCCTCCTGGGCGAATGC GGCGCCGGGTGAGGCTGCACAACCCGTCTTCGACCGTATCAGCGAGCTACTGCGACAGCGCGGAATAGTTGTAGAAACAG GCCGATTCGGTGCGATGATGAAAGTCTCCAGTGTGAACGAGGGACCATTCACCGTACTGATAGAGACCTAG
Upstream 100 bases:
>100_bases TTCCGGAAGACTTGCGAGAGCTGTACTAAAGCTCCAGAACTAGAGCCCCAGAAAACCCTATTGTTAGAAATCCCGAGATT TTGAGGAAGGCGGATCGGCA
Downstream 100 bases:
>100_bases GTATACCTGCCGTCTTTTGAATAGTTCCAGGTCAAATGCTTGCTTCGCTTTCGCATCGCTAACCGCTGAAACCGGCGACC CTATTGCGGGGGTAGGGGAA
Product: D-tyrosyl-tRNA(Tyr) deacylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 156; Mature: 156
Protein sequence:
>156_residues MKAVVSTVSSAEVTVDGEVVGSVQGPALLALVGIGTGDIEDASVTDAAVEKMARKLAELRLLPAVGEPWDSPRNHSVEEV GGQVLLVSQFTLMGETKKGRRPSWANAAPGEAAQPVFDRISELLRQRGIVVETGRFGAMMKVSSVNEGPFTVLIET
Sequences:
>Translated_156_residues MKAVVSTVSSAEVTVDGEVVGSVQGPALLALVGIGTGDIEDASVTDAAVEKMARKLAELRLLPAVGEPWDSPRNHSVEEV GGQVLLVSQFTLMGETKKGRRPSWANAAPGEAAQPVFDRISELLRQRGIVVETGRFGAMMKVSSVNEGPFTVLIET >Mature_156_residues MKAVVSTVSSAEVTVDGEVVGSVQGPALLALVGIGTGDIEDASVTDAAVEKMARKLAELRLLPAVGEPWDSPRNHSVEEV GGQVLLVSQFTLMGETKKGRRPSWANAAPGEAAQPVFDRISELLRQRGIVVETGRFGAMMKVSSVNEGPFTVLIET
Specific function: Hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr). Could be a defense mechanism against a harmful effect of D-tyrosine [H]
COG id: COG1490
COG function: function code J; D-Tyr-tRNAtyr deacylase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DTD family [H]
Homologues:
Organism=Homo sapiens, GI30795227, Length=159, Percent_Identity=35.8490566037736, Blast_Score=81, Evalue=3e-16, Organism=Escherichia coli, GI1790320, Length=155, Percent_Identity=37.4193548387097, Blast_Score=98, Evalue=3e-22, Organism=Caenorhabditis elegans, GI115533292, Length=159, Percent_Identity=36.4779874213836, Blast_Score=83, Evalue=7e-17, Organism=Saccharomyces cerevisiae, GI6319982, Length=161, Percent_Identity=36.6459627329193, Blast_Score=98, Evalue=5e-22, Organism=Drosophila melanogaster, GI281361569, Length=158, Percent_Identity=37.3417721518987, Blast_Score=92, Evalue=1e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003732 [H]
Pfam domain/function: PF02580 Tyr_Deacylase [H]
EC number: NA
Molecular weight: Translated: 16428; Mature: 16428
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKAVVSTVSSAEVTVDGEVVGSVQGPALLALVGIGTGDIEDASVTDAAVEKMARKLAELR CCHHHHCCCCCEEEECCEEEECCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH LLPAVGEPWDSPRNHSVEEVGGQVLLVSQFTLMGETKKGRRPSWANAAPGEAAQPVFDRI HCCCCCCCCCCCCCCCHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHH SELLRQRGIVVETGRFGAMMKVSSVNEGPFTVLIET HHHHHHCCCEEECCCCCCEEEECCCCCCCEEEEEEC >Mature Secondary Structure MKAVVSTVSSAEVTVDGEVVGSVQGPALLALVGIGTGDIEDASVTDAAVEKMARKLAELR CCHHHHCCCCCEEEECCEEEECCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH LLPAVGEPWDSPRNHSVEEVGGQVLLVSQFTLMGETKKGRRPSWANAAPGEAAQPVFDRI HCCCCCCCCCCCCCCCHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHH SELLRQRGIVVETGRFGAMMKVSSVNEGPFTVLIET HHHHHHCCCEEECCCCCCEEEECCCCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA