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The map label for this gene is ybeY [C]

Identifier: 68535676

GI number: 68535676

Start: 731118

End: 731666

Strand: Direct

Name: ybeY [C]

Synonym: jk0604

Alternate gene names: 68535676

Gene position: 731118-731666 (Clockwise)

Preceding gene: 68535675

Following gene: 68535677

Centisome position: 29.69

GC content: 62.66

Gene sequence:

>549_bases
ATGAGCATCGAAGTTTTTAACGAATCCGGCCGCGGCGAGGTCAACGAGGAAGAGCTGATCGACGTCGCTCGCTACGCACT
GTGGACCCTCGACGTTCACCCGGCCGCTGAGCTTTCTATCCACATTGTCGACCTGGAAACCATCGAGGACCTGCACGTTA
GGTGGATGGATCTGCCCGGCCCTACCGATGTGATGAGCTTTCCGATGGACGAATTGACGCCGGGTTGGGGCCGTAAGGAT
GCGGCGGAACCCTCCCCGGCGATGTTGGGCGACATCATGCTGTGCCCCGACTTTGCTGAAGGTCAGGCGACCCGTGCGGG
CCACTCCCTGGCCCACGAGCTCGACCTGTTGACCGTCCACGGGGTGCTGCACCTGCTGGGCTTCGACCACGTCACCCCGG
AGGACGAGCAGAAGATGTTCGCCCTGCAGAATGAGATCCTGGCGAACTGGTACGACTCCCAGGAGGAGCGCGGCGTGAGC
TTCGCTCCGAAGCCGACTGGTGCCGGGGCCTTCCCCAGTGCTGCGGACCGCGACGACACTCAAAACTAG

Upstream 100 bases:

>100_bases
ACGAGCTAGACAATGAGATCTAACGGAGATCTAGCGGAAATCTAACAGCAATCTAGCGGAAATCTAACGGCAAGCACGAA
CTACCAAAGGCAAGCATCCC

Downstream 100 bases:

>100_bases
AAGCTTCGAAAGATGACGATCGACATCCCCTTATCCATCCCATTTGCGATCCTTGCGCTCTTCTTAGGCGGTGTGCTGTC
GCTGGTGGAAACGGCAGTGT

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MSIEVFNESGRGEVNEEELIDVARYALWTLDVHPAAELSIHIVDLETIEDLHVRWMDLPGPTDVMSFPMDELTPGWGRKD
AAEPSPAMLGDIMLCPDFAEGQATRAGHSLAHELDLLTVHGVLHLLGFDHVTPEDEQKMFALQNEILANWYDSQEERGVS
FAPKPTGAGAFPSAADRDDTQN

Sequences:

>Translated_182_residues
MSIEVFNESGRGEVNEEELIDVARYALWTLDVHPAAELSIHIVDLETIEDLHVRWMDLPGPTDVMSFPMDELTPGWGRKD
AAEPSPAMLGDIMLCPDFAEGQATRAGHSLAHELDLLTVHGVLHLLGFDHVTPEDEQKMFALQNEILANWYDSQEERGVS
FAPKPTGAGAFPSAADRDDTQN
>Mature_181_residues
SIEVFNESGRGEVNEEELIDVARYALWTLDVHPAAELSIHIVDLETIEDLHVRWMDLPGPTDVMSFPMDELTPGWGRKDA
AEPSPAMLGDIMLCPDFAEGQATRAGHSLAHELDLLTVHGVLHLLGFDHVTPEDEQKMFALQNEILANWYDSQEERGVSF
APKPTGAGAFPSAADRDDTQN

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_CORJK (Q4JWP4)

Other databases:

- EMBL:   CR931997
- RefSeq:   YP_250381.1
- ProteinModelPortal:   Q4JWP4
- SMR:   Q4JWP4
- STRING:   Q4JWP4
- GeneID:   3432528
- GenomeReviews:   CR931997_GR
- KEGG:   cjk:jk0604
- NMPDR:   fig|306537.3.peg.833
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   EHERARM
- ProtClustDB:   PRK00016
- BioCyc:   CJEI306537:JK0604-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 20121; Mature: 19989

Theoretical pI: Translated: 4.04; Mature: 4.04

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIEVFNESGRGEVNEEELIDVARYALWTLDVHPAAELSIHIVDLETIEDLHVRWMDLPG
CEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCCCEEEEECCCC
PTDVMSFPMDELTPGWGRKDAAEPSPAMLGDIMLCPDFAEGQATRAGHSLAHELDLLTVH
CHHHHHCCHHHCCCCCCCCCCCCCCCHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHH
GVLHLLGFDHVTPEDEQKMFALQNEILANWYDSQEERGVSFAPKPTGAGAFPSAADRDDT
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC
QN
CC
>Mature Secondary Structure 
SIEVFNESGRGEVNEEELIDVARYALWTLDVHPAAELSIHIVDLETIEDLHVRWMDLPG
EEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCCCEEEEECCCC
PTDVMSFPMDELTPGWGRKDAAEPSPAMLGDIMLCPDFAEGQATRAGHSLAHELDLLTVH
CHHHHHCCHHHCCCCCCCCCCCCCCCHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHH
GVLHLLGFDHVTPEDEQKMFALQNEILANWYDSQEERGVSFAPKPTGAGAFPSAADRDDT
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC
QN
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA