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The map label for this gene is yggB [C]

Identifier: 66768272

GI number: 66768272

Start: 2354572

End: 2355531

Strand: Reverse

Name: yggB [C]

Synonym: XC_1951

Alternate gene names: 66768272

Gene position: 2355531-2354572 (Counterclockwise)

Preceding gene: 66768273

Following gene: 66768268

Centisome position: 45.75

GC content: 63.85

Gene sequence:

>960_bases
ATGGGAATGGTGGGTGGAGTGTTGGCGGCGGCTGCGGGAGCGGCCGCCGCAAAACCGGCGGCAGCGAAGTCGCCGGCCTT
TGACTGGAGCAACCTCAATTGGGCGGAGTACGCGCTCAATTGCGGGTTGGCACTGCTCATCCTCGTGGTGGGCATGTGGC
TGGCCAAGCAACTCAGCCAGTGGCTGCACCGCGCACTGACGCGGGCACGGGTCGAAATCACGTTGGCCAACTTCCTGCGC
AACGTGTCGTATGCGTTGTTGCTGGTGCTGGTGTTCGTGAGCGCACTGAGCAAGATCGGCGTGCCGCCGACGTCGCTGAT
TGCGGTGCTCGGCGCGGCCGGTCTGGCAGTGGGTCTGGCGTTGAAGGACTCGCTGTCCAACATCGCTGCGGGCGTCATGC
TGATCGTGCTGCGGCCGATGCGCGATGGCGACCACGTGGTGATTGCCGGCCAGGAAGGCATTGTCGATGAGATCCGGATC
TTCCAGACCCGGATCAAGGCGTTCGACGAACGCATGATCACGCTACCCAACAGCACGATCACGACCGCACCCATCATCAA
TTACAGCACCCTGCCGACCCGCCGCCTGGAGGTCACCGTGGGCGTCGGCTACGGCGACGATTTGAAGAAGGCGCAGCAAC
TGCTGCTGCAGATTGCCAAGGACAACCCGAACGTCCTGGACACACCGGCGCCGTTCGTCCAGGTCACCAACCTGGGCGAG
AGCACGGTGGATCTGATGCTGTTTGCTTACGCCAGCAACGGCAATTTCGGCGCGGCCAAGAGCACCACGCTGGAGCAGAT
CCGCGACCAGCTGCTGGAAAACGGACTGAGCATCCCCTACCCGCAGCGCGACCTGCACGTGTATCACCACGATGCCGATG
GCAAGCCGATCGCCGAGCTGCTGCGCAAGGGCGTCACCGACGATGGCGATCTGACCAAGGGGCCGCCGCTGGCCCGTTGA

Upstream 100 bases:

>100_bases
CCGAGTGGTTGATGCAGGAAGGCATCGAGTCGGTGTCGCTGAATCCTGACACCGTGGTCGATACCTGGCTGCGCCTGGCC
AAGCTCAAGAGCGAGGGCTG

Downstream 100 bases:

>100_bases
GCCTACATTGGCACGCGTTGTAGTGAGTCAAACAAAAGGGCCGCATTGATGATGCGGCCCTTTTTGTTACTGCGGGTGTC
CGGTCAATAGGTGCGCGGTA

Product: small conductance mechanosensitive ion channel

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MGMVGGVLAAAAGAAAAKPAAAKSPAFDWSNLNWAEYALNCGLALLILVVGMWLAKQLSQWLHRALTRARVEITLANFLR
NVSYALLLVLVFVSALSKIGVPPTSLIAVLGAAGLAVGLALKDSLSNIAAGVMLIVLRPMRDGDHVVIAGQEGIVDEIRI
FQTRIKAFDERMITLPNSTITTAPIINYSTLPTRRLEVTVGVGYGDDLKKAQQLLLQIAKDNPNVLDTPAPFVQVTNLGE
STVDLMLFAYASNGNFGAAKSTTLEQIRDQLLENGLSIPYPQRDLHVYHHDADGKPIAELLRKGVTDDGDLTKGPPLAR

Sequences:

>Translated_319_residues
MGMVGGVLAAAAGAAAAKPAAAKSPAFDWSNLNWAEYALNCGLALLILVVGMWLAKQLSQWLHRALTRARVEITLANFLR
NVSYALLLVLVFVSALSKIGVPPTSLIAVLGAAGLAVGLALKDSLSNIAAGVMLIVLRPMRDGDHVVIAGQEGIVDEIRI
FQTRIKAFDERMITLPNSTITTAPIINYSTLPTRRLEVTVGVGYGDDLKKAQQLLLQIAKDNPNVLDTPAPFVQVTNLGE
STVDLMLFAYASNGNFGAAKSTTLEQIRDQLLENGLSIPYPQRDLHVYHHDADGKPIAELLRKGVTDDGDLTKGPPLAR
>Mature_318_residues
GMVGGVLAAAAGAAAAKPAAAKSPAFDWSNLNWAEYALNCGLALLILVVGMWLAKQLSQWLHRALTRARVEITLANFLRN
VSYALLLVLVFVSALSKIGVPPTSLIAVLGAAGLAVGLALKDSLSNIAAGVMLIVLRPMRDGDHVVIAGQEGIVDEIRIF
QTRIKAFDERMITLPNSTITTAPIINYSTLPTRRLEVTVGVGYGDDLKKAQQLLLQIAKDNPNVLDTPAPFVQVTNLGES
TVDLMLFAYASNGNFGAAKSTTLEQIRDQLLENGLSIPYPQRDLHVYHHDADGKPIAELLRKGVTDDGDLTKGPPLAR

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=258, Percent_Identity=35.6589147286822, Blast_Score=180, Evalue=1e-46,
Organism=Escherichia coli, GI1786670, Length=241, Percent_Identity=31.5352697095436, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787591, Length=253, Percent_Identity=26.4822134387352, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI2367355, Length=203, Percent_Identity=25.1231527093596, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 34122; Mature: 33991

Theoretical pI: Translated: 7.71; Mature: 7.71

Prosite motif: PS01246 UPF0003

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGMVGGVLAAAAGAAAAKPAAAKSPAFDWSNLNWAEYALNCGLALLILVVGMWLAKQLSQ
CCCHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
WLHRALTRARVEITLANFLRNVSYALLLVLVFVSALSKIGVPPTSLIAVLGAAGLAVGLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LKDSLSNIAAGVMLIVLRPMRDGDHVVIAGQEGIVDEIRIFQTRIKAFDERMITLPNSTI
HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHEEECCCCCC
TTAPIINYSTLPTRRLEVTVGVGYGDDLKKAQQLLLQIAKDNPNVLDTPAPFVQVTNLGE
CCCCCEECCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCC
STVDLMLFAYASNGNFGAAKSTTLEQIRDQLLENGLSIPYPQRDLHVYHHDADGKPIAEL
HHEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHH
LRKGVTDDGDLTKGPPLAR
HHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GMVGGVLAAAAGAAAAKPAAAKSPAFDWSNLNWAEYALNCGLALLILVVGMWLAKQLSQ
CCHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
WLHRALTRARVEITLANFLRNVSYALLLVLVFVSALSKIGVPPTSLIAVLGAAGLAVGLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LKDSLSNIAAGVMLIVLRPMRDGDHVVIAGQEGIVDEIRIFQTRIKAFDERMITLPNSTI
HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHEEECCCCCC
TTAPIINYSTLPTRRLEVTVGVGYGDDLKKAQQLLLQIAKDNPNVLDTPAPFVQVTNLGE
CCCCCEECCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCC
STVDLMLFAYASNGNFGAAKSTTLEQIRDQLLENGLSIPYPQRDLHVYHHDADGKPIAEL
HHEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHH
LRKGVTDDGDLTKGPPLAR
HHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]