Click here to switch to the map view.

The map label for this gene is tadA [H]

Identifier: 66768270

GI number: 66768270

Start: 2353240

End: 2353755

Strand: Direct

Name: tadA [H]

Synonym: XC_1949

Alternate gene names: 66768270

Gene position: 2353240-2353755 (Clockwise)

Preceding gene: 66768269

Following gene: 66768271

Centisome position: 45.71

GC content: 68.02

Gene sequence:

>516_bases
GTGAGCGTGTCGCCCGATCACCACGCGCAAGACGCACACCTGCAAATCGACCAGCAATGGATGACTCACGCCTTGCGGCT
GGCCGAACGTGCCGAGCGGGACTATGACGAGATTCCGGTCGGCGCGGTGCTGGTGGATCCAACCGGCGCGCTGCTCGGCG
AGGGCTGGAACTTCAACATCGCCAGCCACGACCCCAGTGCGCATGCCGAGATCATGGCCATGCGCGAAGGCGGCCGGCGG
CTGGCCAACCACCGCCTGATCGGCTGCACGCTGTACGTGACGTTGGAGCCGTGTGCAATGTGCGCCATGGCGATGATCCA
TGCGCGCATTGCGCGGGTGGTGTTCGCCGCCAGCGACCCCAAGACCGGCGCCTGCGGCAGCGTGTTCGACCTGCTCGCCG
ACCCACGCCACAACCATCGCGTGCAGGTCAGCGGCGGGGTGCTGGCCGCCGAGGCCGGGCTGCGCCTGACCAATTACTTT
CGCGCCAAGCGTGGCAAGCCGCCGCTCGTGCCCTGA

Upstream 100 bases:

>100_bases
CCACCGCGCGGCGTGACGCCGAAGGCATCGAACACCACGTCAGCGAAGCCACCGTCGCCGCTTTTGCCGCGTTCCTGGAA
CGGCAGGGCAACAGCACCCC

Downstream 100 bases:

>100_bases
TCGGCATGGCCGCGGTATGATGCGCGCCCTTTCAGCACCCGGCCGGCAACGGCCCTCCACAGGACGGTGATATGGCAGAC
AACGTTGCGGGCAACGACCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MSVSPDHHAQDAHLQIDQQWMTHALRLAERAERDYDEIPVGAVLVDPTGALLGEGWNFNIASHDPSAHAEIMAMREGGRR
LANHRLIGCTLYVTLEPCAMCAMAMIHARIARVVFAASDPKTGACGSVFDLLADPRHNHRVQVSGGVLAAEAGLRLTNYF
RAKRGKPPLVP

Sequences:

>Translated_171_residues
MSVSPDHHAQDAHLQIDQQWMTHALRLAERAERDYDEIPVGAVLVDPTGALLGEGWNFNIASHDPSAHAEIMAMREGGRR
LANHRLIGCTLYVTLEPCAMCAMAMIHARIARVVFAASDPKTGACGSVFDLLADPRHNHRVQVSGGVLAAEAGLRLTNYF
RAKRGKPPLVP
>Mature_170_residues
SVSPDHHAQDAHLQIDQQWMTHALRLAERAERDYDEIPVGAVLVDPTGALLGEGWNFNIASHDPSAHAEIMAMREGGRRL
ANHRLIGCTLYVTLEPCAMCAMAMIHARIARVVFAASDPKTGACGSVFDLLADPRHNHRVQVSGGVLAAEAGLRLTNYFR
AKRGKPPLVP

Specific function: Deaminates adenosine-34 to inosine in tRNA-Arg2 [H]

COG id: COG0590

COG function: function code FJ; Cytosine/adenosine deaminases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytidine and deoxycytidylate deaminase family [H]

Homologues:

Organism=Homo sapiens, GI124107608, Length=163, Percent_Identity=28.8343558282209, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI19923945, Length=62, Percent_Identity=58.0645161290323, Blast_Score=68, Evalue=4e-12,
Organism=Escherichia coli, GI145693172, Length=147, Percent_Identity=58.5034013605442, Blast_Score=169, Evalue=6e-44,
Organism=Caenorhabditis elegans, GI17541138, Length=151, Percent_Identity=33.112582781457, Blast_Score=74, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17554608, Length=126, Percent_Identity=29.3650793650794, Blast_Score=71, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17555996, Length=138, Percent_Identity=29.7101449275362, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6322425, Length=160, Percent_Identity=32.5, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016192
- InterPro:   IPR002125
- InterPro:   IPR016193 [H]

Pfam domain/function: PF00383 dCMP_cyt_deam_1 [H]

EC number: NA

Molecular weight: Translated: 18636; Mature: 18504

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: PS00903 CYT_DCMP_DEAMINASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVSPDHHAQDAHLQIDQQWMTHALRLAERAERDYDEIPVGAVLVDPTGALLGEGWNFNI
CCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHCCCEEEEE
ASHDPSAHAEIMAMREGGRRLANHRLIGCTLYVTLEPCAMCAMAMIHARIARVVFAASDP
CCCCCCCHHHHHHHHHCCHHHHCCEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCC
KTGACGSVFDLLADPRHNHRVQVSGGVLAAEAGLRLTNYFRAKRGKPPLVP
CCCCHHHHHHHHCCCCCCCEEEECCCEEEECCCCHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SVSPDHHAQDAHLQIDQQWMTHALRLAERAERDYDEIPVGAVLVDPTGALLGEGWNFNI
CCCCCCCCCCCCEEECHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHCCCEEEEE
ASHDPSAHAEIMAMREGGRRLANHRLIGCTLYVTLEPCAMCAMAMIHARIARVVFAASDP
CCCCCCCHHHHHHHHHCCHHHHCCEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCC
KTGACGSVFDLLADPRHNHRVQVSGGVLAAEAGLRLTNYFRAKRGKPPLVP
CCCCHHHHHHHHCCCCCCCEEEECCCEEEECCCCHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]