| Definition | Xanthomonas campestris pv. campestris str. 8004 chromosome, complete genome. |
|---|---|
| Accession | NC_007086 |
| Length | 5,148,708 |
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The map label for this gene is capD [H]
Identifier: 66768250
GI number: 66768250
Start: 2327786
End: 2329624
Strand: Direct
Name: capD [H]
Synonym: XC_1929
Alternate gene names: 66768250
Gene position: 2327786-2329624 (Clockwise)
Preceding gene: 66768249
Following gene: 66768251
Centisome position: 45.21
GC content: 64.38
Gene sequence:
>1839_bases ATGGTCTGGGTGTGCTGGCAGCTGCTGCATGCGGGCCGTTACTCCATGCTGCGCGACGCGCCAGACCTGCCACTGTGGGA TTGGCGTACGGCGGTGGTCTTGGTCGCACAGGGGCTGGTGTTCTGGCGGATGGGGTTGTATCGCGGCCTCTGGCGCTTTG CCTCGGTGCCGGATCTGTGGAACATCTTCAAGTCCAGTTTTCTCGGCCTGGTCGCGATCGTGCTGGCGCTGTCGTACGAC CGTCTCGATGGCGTGCCGCTCTCGGTGTTGGTGGTCTATCCGTTTGCGTTGTCGGCGTTGCTCGGCACGCCGCGGTTGCT CTACCGCGCCTGGAAGGATTACCAAATTGCCCACTCTGGCGATGCCGCGCAGCGGGTGCTGATTCTTGGCGCAGGGCGTG CGGCCGAGGGCCTGGTGCGTGACCTGCGCCGTAGCGGCACGTTCGTCCCGGTCGGCTTTCTGGATGACGCCACCCATCTG CACGGCGCCAAGATCCAGGGCCTGAATGTGCTGGGCAACCTGGATCAGGCCGCGGCGATCGCCAAGGAAACTGCGGCCAA GCTCCTCGTCATCGCGATTCCATCGCTGGATGCATCCGGCATGCAGCGGGTGGTGGCCATCTGCGAAAGCACCGGCCTGC CGTTCCGGATGGTGCCCAAGCTGATCAACGTGCTGGAAGGCCGGTCGCTGCCAGGCGAGTTGAAGGAAGTGGCGATCGAG GACCTGCTCAACCGCAAGCCGGTCACGCCGGACTGGCGCCTGATCCGCGACTGGCTCACCAACAAGACCGTGATGGTGAC CGGCGCCGGTGGTTCGATCGGCTCGGAAGTCTGCCGGCAGTGCGCGCGTCATGGCGCGCGCCGCATCGTGCTGCTGGAAA TCGATGAGCTGGCGCTGCTGACCATCGATTCGGACCTGCGCCGGTTGTTCCCCGATATCGAAGTGGTGCGTGTGCTTGGC GACTGCGGCGACCCGGCAGTGGTGGCGCATGCCTTACGCACGGCCACGCCCGATGCCGTGTTCCATGCGGCGGCCTACAA GCAGGTACCGCTGCTGGAAGAGCAGCTGCGCGAAGCGGTGCGCAACAACGTGCTGGCAACCGAGAACGTGGCGCGTGCCT GCCAGCGGGCGCGGATCGAAACGTTTGTGTTCATCTCCACCGACAAGGCGGTCGAGCCGGTCAACGTGCTCGGCGCGAGC AAGCGCTATGCGGAGATGATCTGCCAGAGTCTTGACGCCCGCGATGCGCCGACGCGCTTCATCACCGTGCGCTTCGGCAA CGTGCTGGATTCGGCCGGCAGCGTGGTGCCGTTGTTCCGCGAACAGATCCGGCAGGGCGGCCCGGTCACGGTGACGCATC CGGATGTGACGCGTTACTTCATGACCATTCCCGAAGCCTGCCAGCTGGTGGTGCAGGCCGCAGCATCTGCGTCGCACGGC GCCATCTATACGCTGGACATGGGCGAGCCGGTGCCGATCCGGCTCCTGGCCGAGCAGATGATCCGCCTGGCAGGCAAGCA GCCGGGCAAGGACATCGCCATTCTCTACACCGGTCTGCGCCCGGGCGAAAAATTGCACGAGACCTTGTTCTATTCCGACG AGGACTACCGACCCACCGCGCATCCCAAGATCCTGGAAGCCGGTGTGCGCGAGTTCTCGCACGAGCAGGTGTTGCAACTG GTGACGCGCCTGCGCGAGGCGGTTAACCGCTATGACATCAACGCAATGGAGACTGTGCTGGGCAGTCTGATGCCGGATTT TGCGGCTGCTCGACGGAAAGTCGACACGCGATCTGATACGGTCGTTCCATTCCCCGCACGTGAGGTCAGAAGACTTTAA
Upstream 100 bases:
>100_bases GGATTGCGCAATTCTTGAGTAATGGATTTTTATGATTTCCTGGCGTGATCGTTTGACCAAGTCGCTTCCACAGATCGCCG TGGTCGTCCATGACCTGCTG
Downstream 100 bases:
>100_bases TGAGCAAGCGTATTCGCAAGGCCGTATTCCCCGTCGCAGGTCTTGGGACCCGCTTTCTTCCGGCAACCAAGACGGTGCCG AAGGAAATGCTGCCGATCAT
Product: epimerase/dehydratase protein
Products: UDPglucoseal [C]
Alternate protein names: NA
Number of amino acids: Translated: 612; Mature: 612
Protein sequence:
>612_residues MVWVCWQLLHAGRYSMLRDAPDLPLWDWRTAVVLVAQGLVFWRMGLYRGLWRFASVPDLWNIFKSSFLGLVAIVLALSYD RLDGVPLSVLVVYPFALSALLGTPRLLYRAWKDYQIAHSGDAAQRVLILGAGRAAEGLVRDLRRSGTFVPVGFLDDATHL HGAKIQGLNVLGNLDQAAAIAKETAAKLLVIAIPSLDASGMQRVVAICESTGLPFRMVPKLINVLEGRSLPGELKEVAIE DLLNRKPVTPDWRLIRDWLTNKTVMVTGAGGSIGSEVCRQCARHGARRIVLLEIDELALLTIDSDLRRLFPDIEVVRVLG DCGDPAVVAHALRTATPDAVFHAAAYKQVPLLEEQLREAVRNNVLATENVARACQRARIETFVFISTDKAVEPVNVLGAS KRYAEMICQSLDARDAPTRFITVRFGNVLDSAGSVVPLFREQIRQGGPVTVTHPDVTRYFMTIPEACQLVVQAAASASHG AIYTLDMGEPVPIRLLAEQMIRLAGKQPGKDIAILYTGLRPGEKLHETLFYSDEDYRPTAHPKILEAGVREFSHEQVLQL VTRLREAVNRYDINAMETVLGSLMPDFAAARRKVDTRSDTVVPFPAREVRRL
Sequences:
>Translated_612_residues MVWVCWQLLHAGRYSMLRDAPDLPLWDWRTAVVLVAQGLVFWRMGLYRGLWRFASVPDLWNIFKSSFLGLVAIVLALSYD RLDGVPLSVLVVYPFALSALLGTPRLLYRAWKDYQIAHSGDAAQRVLILGAGRAAEGLVRDLRRSGTFVPVGFLDDATHL HGAKIQGLNVLGNLDQAAAIAKETAAKLLVIAIPSLDASGMQRVVAICESTGLPFRMVPKLINVLEGRSLPGELKEVAIE DLLNRKPVTPDWRLIRDWLTNKTVMVTGAGGSIGSEVCRQCARHGARRIVLLEIDELALLTIDSDLRRLFPDIEVVRVLG DCGDPAVVAHALRTATPDAVFHAAAYKQVPLLEEQLREAVRNNVLATENVARACQRARIETFVFISTDKAVEPVNVLGAS KRYAEMICQSLDARDAPTRFITVRFGNVLDSAGSVVPLFREQIRQGGPVTVTHPDVTRYFMTIPEACQLVVQAAASASHG AIYTLDMGEPVPIRLLAEQMIRLAGKQPGKDIAILYTGLRPGEKLHETLFYSDEDYRPTAHPKILEAGVREFSHEQVLQL VTRLREAVNRYDINAMETVLGSLMPDFAAARRKVDTRSDTVVPFPAREVRRL >Mature_612_residues MVWVCWQLLHAGRYSMLRDAPDLPLWDWRTAVVLVAQGLVFWRMGLYRGLWRFASVPDLWNIFKSSFLGLVAIVLALSYD RLDGVPLSVLVVYPFALSALLGTPRLLYRAWKDYQIAHSGDAAQRVLILGAGRAAEGLVRDLRRSGTFVPVGFLDDATHL HGAKIQGLNVLGNLDQAAAIAKETAAKLLVIAIPSLDASGMQRVVAICESTGLPFRMVPKLINVLEGRSLPGELKEVAIE DLLNRKPVTPDWRLIRDWLTNKTVMVTGAGGSIGSEVCRQCARHGARRIVLLEIDELALLTIDSDLRRLFPDIEVVRVLG DCGDPAVVAHALRTATPDAVFHAAAYKQVPLLEEQLREAVRNNVLATENVARACQRARIETFVFISTDKAVEPVNVLGAS KRYAEMICQSLDARDAPTRFITVRFGNVLDSAGSVVPLFREQIRQGGPVTVTHPDVTRYFMTIPEACQLVVQAAASASHG AIYTLDMGEPVPIRLLAEQMIRLAGKQPGKDIAILYTGLRPGEKLHETLFYSDEDYRPTAHPKILEAGVREFSHEQVLQL VTRLREAVNRYDINAMETVLGSLMPDFAAARRKVDTRSDTVVPFPAREVRRL
Specific function: Required for the biosynthesis of type 1 capsular polysaccharide [H]
COG id: COG1086
COG function: function code MG; Predicted nucleoside-diphosphate sugar epimerases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the polysaccharide synthase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016040 - InterPro: IPR003869 [H]
Pfam domain/function: PF02719 Polysacc_synt_2 [H]
EC number: 5.1.3.2 [C]
Molecular weight: Translated: 67708; Mature: 67708
Theoretical pI: Translated: 8.38; Mature: 8.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVWVCWQLLHAGRYSMLRDAPDLPLWDWRTAVVLVAQGLVFWRMGLYRGLWRFASVPDLW CCHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH NIFKSSFLGLVAIVLALSYDRLDGVPLSVLVVYPFALSALLGTPRLLYRAWKDYQIAHSG HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCEEECCC DAAQRVLILGAGRAAEGLVRDLRRSGTFVPVGFLDDATHLHGAKIQGLNVLGNLDQAAAI CCCCEEEEEECCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEECCCHHHCCCHHHHHH AKETAAKLLVIAIPSLDASGMQRVVAICESTGLPFRMVPKLINVLEGRSLPGELKEVAIE HHHHHHCEEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH DLLNRKPVTPDWRLIRDWLTNKTVMVTGAGGSIGSEVCRQCARHGARRIVLLEIDELALL HHHCCCCCCCHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCEEEE TIDSDLRRLFPDIEVVRVLGDCGDPAVVAHALRTATPDAVFHAAAYKQVPLLEEQLREAV EECHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHH RNNVLATENVARACQRARIETFVFISTDKAVEPVNVLGASKRYAEMICQSLDARDAPTRF HCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHCCCHHHHHHHHHHCCCCCCCCEE ITVRFGNVLDSAGSVVPLFREQIRQGGPVTVTHPDVTRYFMTIPEACQLVVQAAASASHG EEEEECHHHHCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCC AIYTLDMGEPVPIRLLAEQMIRLAGKQPGKDIAILYTGLRPGEKLHETLFYSDEDYRPTA EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCC HPKILEAGVREFSHEQVLQLVTRLREAVNRYDINAMETVLGSLMPDFAAARRKVDTRSDT CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHCCCCCCCC VVPFPAREVRRL CCCCCHHHHHCC >Mature Secondary Structure MVWVCWQLLHAGRYSMLRDAPDLPLWDWRTAVVLVAQGLVFWRMGLYRGLWRFASVPDLW CCHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH NIFKSSFLGLVAIVLALSYDRLDGVPLSVLVVYPFALSALLGTPRLLYRAWKDYQIAHSG HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCEEECCC DAAQRVLILGAGRAAEGLVRDLRRSGTFVPVGFLDDATHLHGAKIQGLNVLGNLDQAAAI CCCCEEEEEECCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEECCCHHHCCCHHHHHH AKETAAKLLVIAIPSLDASGMQRVVAICESTGLPFRMVPKLINVLEGRSLPGELKEVAIE HHHHHHCEEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH DLLNRKPVTPDWRLIRDWLTNKTVMVTGAGGSIGSEVCRQCARHGARRIVLLEIDELALL HHHCCCCCCCHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCEEEE TIDSDLRRLFPDIEVVRVLGDCGDPAVVAHALRTATPDAVFHAAAYKQVPLLEEQLREAV EECHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHH RNNVLATENVARACQRARIETFVFISTDKAVEPVNVLGASKRYAEMICQSLDARDAPTRF HCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHCCCHHHHHHHHHHCCCCCCCCEE ITVRFGNVLDSAGSVVPLFREQIRQGGPVTVTHPDVTRYFMTIPEACQLVVQAAASASHG EEEEECHHHHCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCC AIYTLDMGEPVPIRLLAEQMIRLAGKQPGKDIAILYTGLRPGEKLHETLFYSDEDYRPTA EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCC HPKILEAGVREFSHEQVLQLVTRLREAVNRYDINAMETVLGSLMPDFAAARRKVDTRSDT CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHCCCCCCCC VVPFPAREVRRL CCCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NAD+ [C]
Metal ions: NA
Kcat value (1/min): 57600 [C]
Specific activity: 233.3
Km value (mM): 0.256 {UDPgalactose}} 0.225 {UDPgalactose}} 0.2 {UDPgalactose}} 0.18 {UDPgalactose}} 0.16 {UDPgalactose}} 0.14 {UDPgalactose}} 0.048 {UDPgalactose}} 0.026 {UDPgalactose}} [C]
Substrates: UDPglucose [C]
Specific reaction: UDPglucose <==> UDPglucoseal [C]
General reaction: Epimerization (specificity for carbon forming a hexosulose) [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7961465 [H]