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The map label for this gene is scpB [H]

Identifier: 66768226

GI number: 66768226

Start: 2300826

End: 2302031

Strand: Reverse

Name: scpB [H]

Synonym: XC_1905

Alternate gene names: 66768226

Gene position: 2302031-2300826 (Counterclockwise)

Preceding gene: 77761175

Following gene: 66768225

Centisome position: 44.71

GC content: 67.66

Gene sequence:

>1206_bases
ATGCGCCGTTGCAATTCTCCAGCGAATTCGACGACAGCGACGCTGCCAACGAACCCACCTGAAGCCGATCACCGAATGGA
TCAAGCGCTGATCACCCGCATTATCGAAGCCGCCCTGTTGGCCAGCAGCCAGCCGTTGACGCTGGCGCAGCTGCAAGGGC
TGTTTCCCGAGGAAGAGCCGGCACCGCCCGGCAGCGTGGAGCGCGCGCTGGAACTGCTGCGCGAGGGCTGCACCGAGCGC
GGTGTGGAACTGGTGGAAGTGGCGTCCGGCTTCCGCTTTCAGGTCAAGGCCGACTTGCACGGCTGGGTGGCGCGGCTGTG
GACCGAGCGTCGCACCAAGTACACCCGTGCCACGCTGGAGACCCTGGCGCTGATCGCCTACCGCCAGCCGATCACCCGCG
GCGAAATCGAGCAGGTGCGCGGCGTGGCGGTGAGCAGCAACATCATCCAGGCCCTGGAAGAACGCGAGTGGATCCGCGTG
GTGGGCCACCGCGACGTGCCCGGCAAGCCCGCCCTGTTCGGCACCACCAAGGGCTTTCTGGACTACTTCGGGCTCAAGCG
GCTGGACGAGCTGCCGCCATTGTCTGAGTTGAAGGACATCGCCGAGCTGGAACCGCAGCTGCCGCTGGACCGCGACGGCC
AGCTGGACGGCCCGGTGCCCGCCGCGGCCGCGATGTCGCAAGACGAGACCGCGCCGGCTGATACAGAGCAGGCTGATGGC
GAACAGAGCGATGACGCCGACGACGACGGCGCTGATGATGTCGCCGGAGCAGACAACGACGGCAATGCAACGAATGCCGA
TGCCGATAGCGACGACAACGGCGCAGCAGCACCCACCGATGCAGCGCCAGATGCAGACGTGGAGCCGCAAGCCGACGGAG
ACGCCACCCAGGTCGAAACGACCGGCGCCGGCACCGATGCAGCGCGGAGCCATGGCAGCGACAGCGCAGACAACGCTGCC
GAGGCGCACGACCCGATCGATGCAACACCGCAGCACCCCGCGGCCACCGCGGCGCAGGACCCGAACACGCACCACCCACA
GACCGCCCGCGAGGACGAACCCGACACCGCGCCGGGCACGCGCGCGGATGCAGTGAACGAAGACGAAGACAACGCCGTCG
CGACGACGACCGTGGCTGTTGACGAAGCCGATTCCGACCCAGAGGCCGACCCAGAACGCGTCGGCCGGAGCCAGACACAT
GAGTGA

Upstream 100 bases:

>100_bases
TTGGCGTTGCTGGAATTGGCCAAGGAGCAGTTGCTGGACATCGTGCAGGAAGCGCCGCTGGCGCCGATCTACGTGAAGTC
GCTGGCGTTGGGCAATACCA

Downstream 100 bases:

>100_bases
CACCCCCCGCAAGCTGTCGTTGAACAAGCTTTCCCTCAAGCGCGACAGCGCGCCCGAAGCGCCGAAACTGGAAGAGCGCC
TGCACAAGGTGCTGGCCCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MRRCNSPANSTTATLPTNPPEADHRMDQALITRIIEAALLASSQPLTLAQLQGLFPEEEPAPPGSVERALELLREGCTER
GVELVEVASGFRFQVKADLHGWVARLWTERRTKYTRATLETLALIAYRQPITRGEIEQVRGVAVSSNIIQALEEREWIRV
VGHRDVPGKPALFGTTKGFLDYFGLKRLDELPPLSELKDIAELEPQLPLDRDGQLDGPVPAAAAMSQDETAPADTEQADG
EQSDDADDDGADDVAGADNDGNATNADADSDDNGAAAPTDAAPDADVEPQADGDATQVETTGAGTDAARSHGSDSADNAA
EAHDPIDATPQHPAATAAQDPNTHHPQTAREDEPDTAPGTRADAVNEDEDNAVATTTVAVDEADSDPEADPERVGRSQTH
E

Sequences:

>Translated_401_residues
MRRCNSPANSTTATLPTNPPEADHRMDQALITRIIEAALLASSQPLTLAQLQGLFPEEEPAPPGSVERALELLREGCTER
GVELVEVASGFRFQVKADLHGWVARLWTERRTKYTRATLETLALIAYRQPITRGEIEQVRGVAVSSNIIQALEEREWIRV
VGHRDVPGKPALFGTTKGFLDYFGLKRLDELPPLSELKDIAELEPQLPLDRDGQLDGPVPAAAAMSQDETAPADTEQADG
EQSDDADDDGADDVAGADNDGNATNADADSDDNGAAAPTDAAPDADVEPQADGDATQVETTGAGTDAARSHGSDSADNAA
EAHDPIDATPQHPAATAAQDPNTHHPQTAREDEPDTAPGTRADAVNEDEDNAVATTTVAVDEADSDPEADPERVGRSQTH
E
>Mature_401_residues
MRRCNSPANSTTATLPTNPPEADHRMDQALITRIIEAALLASSQPLTLAQLQGLFPEEEPAPPGSVERALELLREGCTER
GVELVEVASGFRFQVKADLHGWVARLWTERRTKYTRATLETLALIAYRQPITRGEIEQVRGVAVSSNIIQALEEREWIRV
VGHRDVPGKPALFGTTKGFLDYFGLKRLDELPPLSELKDIAELEPQLPLDRDGQLDGPVPAAAAMSQDETAPADTEQADG
EQSDDADDDGADDVAGADNDGNATNADADSDDNGAAAPTDAAPDADVEPQADGDATQVETTGAGTDAARSHGSDSADNAA
EAHDPIDATPQHPAATAAQDPNTHHPQTAREDEPDTAPGTRADAVNEDEDNAVATTTVAVDEADSDPEADPERVGRSQTH
E

Specific function: May participate in chromosomal partitioning during cell division (Potential) [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 42600; Mature: 42600

Theoretical pI: Translated: 3.97; Mature: 3.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRCNSPANSTTATLPTNPPEADHRMDQALITRIIEAALLASSQPLTLAQLQGLFPEEEP
CCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCC
APPGSVERALELLREGCTERGVELVEVASGFRFQVKADLHGWVARLWTERRTKYTRATLE
CCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
TLALIAYRQPITRGEIEQVRGVAVSSNIIQALEEREWIRVVGHRDVPGKPALFGTTKGFL
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCHHHHH
DYFGLKRLDELPPLSELKDIAELEPQLPLDRDGQLDGPVPAAAAMSQDETAPADTEQADG
HHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC
EQSDDADDDGADDVAGADNDGNATNADADSDDNGAAAPTDAAPDADVEPQADGDATQVET
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
TGAGTDAARSHGSDSADNAAEAHDPIDATPQHPAATAAQDPNTHHPQTAREDEPDTAPGT
CCCCCHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
RADAVNEDEDNAVATTTVAVDEADSDPEADPERVGRSQTHE
CCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHCCCCCCCC
>Mature Secondary Structure
MRRCNSPANSTTATLPTNPPEADHRMDQALITRIIEAALLASSQPLTLAQLQGLFPEEEP
CCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCC
APPGSVERALELLREGCTERGVELVEVASGFRFQVKADLHGWVARLWTERRTKYTRATLE
CCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
TLALIAYRQPITRGEIEQVRGVAVSSNIIQALEEREWIRVVGHRDVPGKPALFGTTKGFL
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCHHHHH
DYFGLKRLDELPPLSELKDIAELEPQLPLDRDGQLDGPVPAAAAMSQDETAPADTEQADG
HHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC
EQSDDADDDGADDVAGADNDGNATNADADSDDNGAAAPTDAAPDADVEPQADGDATQVET
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
TGAGTDAARSHGSDSADNAAEAHDPIDATPQHPAATAAQDPNTHHPQTAREDEPDTAPGT
CCCCCHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
RADAVNEDEDNAVATTTVAVDEADSDPEADPERVGRSQTHE
CCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]