Click here to switch to the map view.

The map label for this gene is ybdA [C]

Identifier: 66768186

GI number: 66768186

Start: 2258823

End: 2260073

Strand: Reverse

Name: ybdA [C]

Synonym: XC_1865

Alternate gene names: 66768186

Gene position: 2260073-2258823 (Counterclockwise)

Preceding gene: 66768187

Following gene: 66768180

Centisome position: 43.9

GC content: 68.67

Gene sequence:

>1251_bases
GTGAGCACGCCCACGCCGTCACGGGCAGCCTCGCTGCGCACGCTGCTGACCTACCCCGGCTTCGGGTTGATCCTGCTGTA
CCGCGTCAGCGCGATGCTGTCCTACCAGATCGTTGCGGTGACGGTGGGCTGGCACATCTACGAGATCACCCGCAGTCCGC
TGTCGCTGGGATTGATCGGGCTGGCGGAAATCCTGCCGTTCTTCTGCATCGCGCCGTTCGCCGGGTATCTGGTCGACCAT
CTGCCGCGGCGCCGGCTCGGCATGACGGCCGCGCTGGGCCTGGTGGCCACCGCCCTGATCCTGACGGCCATCACGCATGG
CTGGTTGCCAGTCAACGGCGTGTGGCCGATCTATGCGGCCATCGCGCTGACCGGCGCCGCGCGCTCGTTCCTGTCGCCGG
TGTACAACGCCTTGTTCGCACGCGCCCTGCCGCGCGAGGCCTTCGCGCGTGGCGCCAGCATCGGCAGCGTGACCTTCCAG
GCCGGCATGGTGATCGGCCCGGCGCTGGGCGGCGTGCTGGTCGCCTGGGGTGGCAAGGGCCTGGCCTATGGCGTAGCGGC
AAGCGTGGCGCTGGTGGCCATCCTGGCGCTGTTCCTGCTGCGCGTGACCGAGCCGGTCAACGCAGGCCCGCGTGCACCGA
TCTTCCGCAGCATTGCCGAAGGCGCGCAGTTCGTGTTGTCCAACCAGATCATGCTCGGCGCGATGGCGCTGGACATGTTC
TCGGTGCTGCTCGGCGGTGCGGTGTCGATGCTGCCGGCCTTCATCCACGACATCCTGCACTACGGGCCGGAAGGGCTGGG
CATCCTGCGCGGCGCACCTGCGCTGGGCTCGATCCTGGTCGGCGTATGGCTGGCGCGGCACCCGCTGCAGCGCAACGCCG
GGCGCATCCTGCTGCTGTCGGTGGCCGGGTTCGGGCTGTGCACGATCGCCTTCGGCCTGTCACGCCACTTCTGGTTATCG
GCGGCGATCCTGCTGTCCTACGGCATGTGCGACGGCGTGTCGGTCGTGGTACGCCAGACCATCCTGCAACTGGCCACGCC
GGACGCGATGCGCGGCCGGGTGTCATCGATCAACGGCATTTTCATCGGCTCGTCCAACGAGCTGGGCGCGTTCTACGACG
GGGTGATGGCGCGGCTGGTCGGCCTGGTGCCGGCGGTGGTGATCGGTGGCTGCGTGACCCTGGGCGTGGTGGCGACCACT
GCGTGGAAGGCGCCGAAATTGCGCAAGCTGGATCTGCGCGATCTGCAGTAG

Upstream 100 bases:

>100_bases
ACATCGCCGGAATCGGCCTGGCCAAGCACCTCTCACCGACCCGCAGCAATGGCGTGGCCGCGATGCTGGCCTTCATCCGC
GACACCGCCCGCGCGCAGCA

Downstream 100 bases:

>100_bases
CCGCTACATGTAGCGTGGTCGAGTTTGCGTGCGCCTGCTCGCGAAAATGGGCGGCGCAGATACGGCCGTGCGAACAGCCA
CTACTAGCAATGCGTGACGA

Product: drug:proton antiporter

Products: NA

Alternate protein names: Facilitator Superfamily Protein; Facilitator Superfamily Permease; MFS Permease; DrugProton Antiporter; Membrane Transporter; Facilitator Superfamily Transporter; Permease Of Facilitator Superfamily; Transporter Facilitator Family; Transmembrane Protein; Facilitator Superfamily Transporter Permease; MFS Family Transporter; Facilitator Superfamily; Facilitator MFS1 Protein; Permease Facilitator Superfamily; Siderophore Export Protein; Macrolide-Efflux Protein; Integral Membrane Protein; Permease Protein; Facilitator Superfamily Multidrug Resistance Protein; Permeases Of Facilitator Superfamily; Mfs Transporter; Permease MDR ; Facilitator Superfamily Transmembrane Transporter; Arabinose Efflux Permease; Permease Of Facilitator Superfamily Protein; Drug Proton Antiporter; Integral Membrane Protein MFS Transporter; MFS Transporter; Membrame Protein; DrugH+ Antiporter; Facilitator Family Transporter; Drug Resistance Efflux Protein; Facilitator Superfamily Transporter Transporter

Number of amino acids: Translated: 416; Mature: 415

Protein sequence:

>416_residues
MSTPTPSRAASLRTLLTYPGFGLILLYRVSAMLSYQIVAVTVGWHIYEITRSPLSLGLIGLAEILPFFCIAPFAGYLVDH
LPRRRLGMTAALGLVATALILTAITHGWLPVNGVWPIYAAIALTGAARSFLSPVYNALFARALPREAFARGASIGSVTFQ
AGMVIGPALGGVLVAWGGKGLAYGVAASVALVAILALFLLRVTEPVNAGPRAPIFRSIAEGAQFVLSNQIMLGAMALDMF
SVLLGGAVSMLPAFIHDILHYGPEGLGILRGAPALGSILVGVWLARHPLQRNAGRILLLSVAGFGLCTIAFGLSRHFWLS
AAILLSYGMCDGVSVVVRQTILQLATPDAMRGRVSSINGIFIGSSNELGAFYDGVMARLVGLVPAVVIGGCVTLGVVATT
AWKAPKLRKLDLRDLQ

Sequences:

>Translated_416_residues
MSTPTPSRAASLRTLLTYPGFGLILLYRVSAMLSYQIVAVTVGWHIYEITRSPLSLGLIGLAEILPFFCIAPFAGYLVDH
LPRRRLGMTAALGLVATALILTAITHGWLPVNGVWPIYAAIALTGAARSFLSPVYNALFARALPREAFARGASIGSVTFQ
AGMVIGPALGGVLVAWGGKGLAYGVAASVALVAILALFLLRVTEPVNAGPRAPIFRSIAEGAQFVLSNQIMLGAMALDMF
SVLLGGAVSMLPAFIHDILHYGPEGLGILRGAPALGSILVGVWLARHPLQRNAGRILLLSVAGFGLCTIAFGLSRHFWLS
AAILLSYGMCDGVSVVVRQTILQLATPDAMRGRVSSINGIFIGSSNELGAFYDGVMARLVGLVPAVVIGGCVTLGVVATT
AWKAPKLRKLDLRDLQ
>Mature_415_residues
STPTPSRAASLRTLLTYPGFGLILLYRVSAMLSYQIVAVTVGWHIYEITRSPLSLGLIGLAEILPFFCIAPFAGYLVDHL
PRRRLGMTAALGLVATALILTAITHGWLPVNGVWPIYAAIALTGAARSFLSPVYNALFARALPREAFARGASIGSVTFQA
GMVIGPALGGVLVAWGGKGLAYGVAASVALVAILALFLLRVTEPVNAGPRAPIFRSIAEGAQFVLSNQIMLGAMALDMFS
VLLGGAVSMLPAFIHDILHYGPEGLGILRGAPALGSILVGVWLARHPLQRNAGRILLLSVAGFGLCTIAFGLSRHFWLSA
AILLSYGMCDGVSVVVRQTILQLATPDAMRGRVSSINGIFIGSSNELGAFYDGVMARLVGLVPAVVIGGCVTLGVVATTA
WKAPKLRKLDLRDLQ

Specific function: Unknown

COG id: COG0477

COG function: function code GEPR; Permeases of the major facilitator superfamily

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786806, Length=361, Percent_Identity=27.1468144044321, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43710; Mature: 43578

Theoretical pI: Translated: 10.45; Mature: 10.45

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPTPSRAASLRTLLTYPGFGLILLYRVSAMLSYQIVAVTVGWHIYEITRSPLSLGLIG
CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEECCEEEEECCCCHHHHHHH
LAEILPFFCIAPFAGYLVDHLPRRRLGMTAALGLVATALILTAITHGWLPVNGVWPIYAA
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
IALTGAARSFLSPVYNALFARALPREAFARGASIGSVTFQAGMVIGPALGGVLVAWGGKG
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHCCCEEHHHHCCEEEEECCCC
LAYGVAASVALVAILALFLLRVTEPVNAGPRAPIFRSIAEGAQFVLSNQIMLGAMALDMF
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVLLGGAVSMLPAFIHDILHYGPEGLGILRGAPALGSILVGVWLARHPLQRNAGRILLLS
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHHHHHHCCHHCCCCCEEEEE
VAGFGLCTIAFGLSRHFWLSAAILLSYGMCDGVSVVVRQTILQLATPDAMRGRVSSINGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHCHHHCCCEE
FIGSSNELGAFYDGVMARLVGLVPAVVIGGCVTLGVVATTAWKAPKLRKLDLRDLQ
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
STPTPSRAASLRTLLTYPGFGLILLYRVSAMLSYQIVAVTVGWHIYEITRSPLSLGLIG
CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEECCEEEEECCCCHHHHHHH
LAEILPFFCIAPFAGYLVDHLPRRRLGMTAALGLVATALILTAITHGWLPVNGVWPIYAA
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
IALTGAARSFLSPVYNALFARALPREAFARGASIGSVTFQAGMVIGPALGGVLVAWGGKG
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHCCCEEHHHHCCEEEEECCCC
LAYGVAASVALVAILALFLLRVTEPVNAGPRAPIFRSIAEGAQFVLSNQIMLGAMALDMF
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVLLGGAVSMLPAFIHDILHYGPEGLGILRGAPALGSILVGVWLARHPLQRNAGRILLLS
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHHHHHHCCHHCCCCCEEEEE
VAGFGLCTIAFGLSRHFWLSAAILLSYGMCDGVSVVVRQTILQLATPDAMRGRVSSINGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHCHHHCCCEE
FIGSSNELGAFYDGVMARLVGLVPAVVIGGCVTLGVVATTAWKAPKLRKLDLRDLQ
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA