Definition Xanthomonas campestris pv. campestris str. 8004 chromosome, complete genome.
Accession NC_007086
Length 5,148,708

Click here to switch to the map view.

The map label for this gene is yhjE [H]

Identifier: 66768085

GI number: 66768085

Start: 2144475

End: 2145755

Strand: Direct

Name: yhjE [H]

Synonym: XC_1764

Alternate gene names: 66768085

Gene position: 2144475-2145755 (Clockwise)

Preceding gene: 66768084

Following gene: 66768090

Centisome position: 41.65

GC content: 65.34

Gene sequence:

>1281_bases
ATGACTGCCGCCACGCCGCTCGCCACGCCCATCAATTCGCCTGCGCGCGTGCTGTTCGCCAGCCTGATCGGCACCACCAT
CGAGTTTTTCGATTTCTACATCTACGCCACCGCGGCGGTGCTGGTGTTTCCCACGTTGTTCTTCCCGGCCGGCGATGGCG
GCGCGGCCATGCTGCAGTCGCTGGCGACGTTCGCGGTGGCCTTCATCGCGCGGCCGGTGGGCTCGGCGGTGTTCGGGCAC
TTCGGCGATCGTGTCGGGCGCAAGGCCACGCTGGTGGCAGCACTGCTGACGATGGGCATTTCCACCGTGGCGATCGGGCT
GCTGCCCAGCTACGCGCAGATCGGCGTGTTCGCGCCGTTGCTGCTGGCGCTGTGCCGGTTCGGCCAGGGGTTGGGCCTGG
GCGGTGAGTGGGGTGGGGCGGTGCTGCTTGCGACCGAAAACGCGCCACCCGGCAAGCGCGTGTGGTACGGCATGTTCCCG
CAATTGGGGGCGCCGCTGGGCTTTTTGCTCTCCACCGGCACCTTTCTGGGCATGGGTGCGCTGCTGGACGATGCGCAGTT
CATGCGCTGGGGCTGGCGCGTCCCTTTCCTGGCCAGCGCCGCGTTGGTGCTCACCGGTCTGTGGGTGCGCCTGAGCATCA
CCGAAACCCCGGACTTCCAGAAAGCCCTGGATCGCAACACCCGTGTGCGGCTGCCGCTGGGCACGGTGATTACTCAGCAC
TGGCCGGCACTGATCATCGGCACCTTGGGCGCGTTTGCAACGTTCGTGTTGTTCTACCTGATGACGGTGTTTGCGCTGGG
CTACGGCACCAAGACGTTGGGCTACGACAAGGAGCAGTTCCTGCTGCTGCAGATGGCCGGCATCGTGTTTTTCGCGCTTG
GGATTCCGATCTCAGCCAAGTTCGGCGACCGCCACGGCGCGCCGCTGGCAATGATGCTGGCCAGCGTGGCGATCGTGGCC
TTCGGCCTGGCGTTCGCGCCGTTGTTCCAGGCCAATCATCCGCTGCAGGTGCTGGCGTTTTTGTCGCTGGGGTTTTTTTT
CATGGGCCTGACTTACGGCCCGTGTGGCACATTGCTGGCCGAGTTGTACCCCACCGAAGTGCGTTACACCGGCGCGTCGT
TGTCGTTCAATTTGGCCAGCATCCTGGGCGCGGCACCGGCACCGTATGTGGCCACCCAACTGGCCGCACGCTACGGCGTG
CAGGCGGTAGGTTATTACCTCGGCGGTGCGGCGGTGTTGAGCCTGTTTGCGTTGATGCTGGCACGTCGATCGCGGCGCTG
A

Upstream 100 bases:

>100_bases
TTCGGTAACGCATGCAACTTTTGCGGGCTGGCGGAGGCTGCGCAACGCCCAGGTGTGATCTGCGAGAATCGGCCGTCTTT
CCTATGGATGCCGATCCTCG

Downstream 100 bases:

>100_bases
GGTAGGCGCGCGTCTGAGCATCTGAGCGCTTGAGTGTGACTGCAACGCCGGTGAAGTCTGGTCGCGCGCAAGCGCGCTCC
TACCAGGCTGCTTGTTCTGA

Product: metabolite transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 426; Mature: 425

Protein sequence:

>426_residues
MTAATPLATPINSPARVLFASLIGTTIEFFDFYIYATAAVLVFPTLFFPAGDGGAAMLQSLATFAVAFIARPVGSAVFGH
FGDRVGRKATLVAALLTMGISTVAIGLLPSYAQIGVFAPLLLALCRFGQGLGLGGEWGGAVLLATENAPPGKRVWYGMFP
QLGAPLGFLLSTGTFLGMGALLDDAQFMRWGWRVPFLASAALVLTGLWVRLSITETPDFQKALDRNTRVRLPLGTVITQH
WPALIIGTLGAFATFVLFYLMTVFALGYGTKTLGYDKEQFLLLQMAGIVFFALGIPISAKFGDRHGAPLAMMLASVAIVA
FGLAFAPLFQANHPLQVLAFLSLGFFFMGLTYGPCGTLLAELYPTEVRYTGASLSFNLASILGAAPAPYVATQLAARYGV
QAVGYYLGGAAVLSLFALMLARRSRR

Sequences:

>Translated_426_residues
MTAATPLATPINSPARVLFASLIGTTIEFFDFYIYATAAVLVFPTLFFPAGDGGAAMLQSLATFAVAFIARPVGSAVFGH
FGDRVGRKATLVAALLTMGISTVAIGLLPSYAQIGVFAPLLLALCRFGQGLGLGGEWGGAVLLATENAPPGKRVWYGMFP
QLGAPLGFLLSTGTFLGMGALLDDAQFMRWGWRVPFLASAALVLTGLWVRLSITETPDFQKALDRNTRVRLPLGTVITQH
WPALIIGTLGAFATFVLFYLMTVFALGYGTKTLGYDKEQFLLLQMAGIVFFALGIPISAKFGDRHGAPLAMMLASVAIVA
FGLAFAPLFQANHPLQVLAFLSLGFFFMGLTYGPCGTLLAELYPTEVRYTGASLSFNLASILGAAPAPYVATQLAARYGV
QAVGYYLGGAAVLSLFALMLARRSRR
>Mature_425_residues
TAATPLATPINSPARVLFASLIGTTIEFFDFYIYATAAVLVFPTLFFPAGDGGAAMLQSLATFAVAFIARPVGSAVFGHF
GDRVGRKATLVAALLTMGISTVAIGLLPSYAQIGVFAPLLLALCRFGQGLGLGGEWGGAVLLATENAPPGKRVWYGMFPQ
LGAPLGFLLSTGTFLGMGALLDDAQFMRWGWRVPFLASAALVLTGLWVRLSITETPDFQKALDRNTRVRLPLGTVITQHW
PALIIGTLGAFATFVLFYLMTVFALGYGTKTLGYDKEQFLLLQMAGIVFFALGIPISAKFGDRHGAPLAMMLASVAIVAF
GLAFAPLFQANHPLQVLAFLSLGFFFMGLTYGPCGTLLAELYPTEVRYTGASLSFNLASILGAAPAPYVATQLAARYGVQ
AVGYYLGGAAVLSLFALMLARRSRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]

Homologues:

Organism=Escherichia coli, GI1789941, Length=423, Percent_Identity=59.5744680851064, Blast_Score=431, Evalue=1e-122,
Organism=Escherichia coli, GI1788292, Length=426, Percent_Identity=33.3333333333333, Blast_Score=222, Evalue=3e-59,
Organism=Escherichia coli, GI1790550, Length=410, Percent_Identity=30.4878048780488, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1788942, Length=414, Percent_Identity=28.743961352657, Blast_Score=144, Evalue=8e-36,
Organism=Escherichia coli, GI87082404, Length=424, Percent_Identity=26.4150943396226, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87082231, Length=241, Percent_Identity=26.1410788381743, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004736
- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196
- InterPro:   IPR005828
- InterPro:   IPR005829 [H]

Pfam domain/function: PF07690 MFS_1; PF00083 Sugar_tr [H]

EC number: NA

Molecular weight: Translated: 45189; Mature: 45058

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAATPLATPINSPARVLFASLIGTTIEFFDFYIYATAAVLVFPTLFFPAGDGGAAMLQS
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
LATFAVAFIARPVGSAVFGHFGDRVGRKATLVAALLTMGISTVAIGLLPSYAQIGVFAPL
HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
LLALCRFGQGLGLGGEWGGAVLLATENAPPGKRVWYGMFPQLGAPLGFLLSTGTFLGMGA
HHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCHHHCCCHHHHHHCCHHHHHHH
LLDDAQFMRWGWRVPFLASAALVLTGLWVRLSITETPDFQKALDRNTRVRLPLGTVITQH
HHHHHHHHHHCCCCHHHHHHHHHHHHHHEEEEECCCCCHHHHHCCCCEEECCHHHHHHHH
WPALIIGTLGAFATFVLFYLMTVFALGYGTKTLGYDKEQFLLLQMAGIVFFALGIPISAK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEC
FGDRHGAPLAMMLASVAIVAFGLAFAPLFQANHPLQVLAFLSLGFFFMGLTYGPCGTLLA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH
ELYPTEVRYTGASLSFNLASILGAAPAPYVATQLAARYGVQAVGYYLGGAAVLSLFALML
HHCCCCEEEECCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARRSRR
HHHCCC
>Mature Secondary Structure 
TAATPLATPINSPARVLFASLIGTTIEFFDFYIYATAAVLVFPTLFFPAGDGGAAMLQS
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
LATFAVAFIARPVGSAVFGHFGDRVGRKATLVAALLTMGISTVAIGLLPSYAQIGVFAPL
HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
LLALCRFGQGLGLGGEWGGAVLLATENAPPGKRVWYGMFPQLGAPLGFLLSTGTFLGMGA
HHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCHHHCCCHHHHHHCCHHHHHHH
LLDDAQFMRWGWRVPFLASAALVLTGLWVRLSITETPDFQKALDRNTRVRLPLGTVITQH
HHHHHHHHHHCCCCHHHHHHHHHHHHHHEEEEECCCCCHHHHHCCCCEEECCHHHHHHHH
WPALIIGTLGAFATFVLFYLMTVFALGYGTKTLGYDKEQFLLLQMAGIVFFALGIPISAK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEC
FGDRHGAPLAMMLASVAIVAFGLAFAPLFQANHPLQVLAFLSLGFFFMGLTYGPCGTLLA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH
ELYPTEVRYTGASLSFNLASILGAAPAPYVATQLAARYGVQAVGYYLGGAAVLSLFALML
HHCCCCEEEECCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARRSRR
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]