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The map label for this gene is rsmD [H]

Identifier: 66768045

GI number: 66768045

Start: 2082307

End: 2082930

Strand: Direct

Name: rsmD [H]

Synonym: XC_1722

Alternate gene names: 66768045

Gene position: 2082307-2082930 (Clockwise)

Preceding gene: 66768042

Following gene: 66768046

Centisome position: 40.44

GC content: 72.44

Gene sequence:

>624_bases
ATGAGCCGCGCTGCACGGCCGGCCAGCGGCGCGGCGGAAGGGCAGGTGCGCATCGTGGGCGGGCGCTGGCGCAATACGCG
TTTGTCGGTGCCACAGCTGCCCGGGTTGCGGCCCAGCAGCGACCGCGTGCGCGAAACGCTGTTCAACTGGCTGCTGCCGC
GCCTGGCCGGCGCCCGCGTGCTGGACCTGTTCGCCGGCTCCGGCGCGCTGGGGCTGGAGGCAGTCTCGCGGGGCGCCGCG
CATGCGTTGCTGATCGAACGCGACCCTGGGCTGGCGCAACGCCTGCGTGAGCACGTGGCCCGGCTGCGCGCCACCGAACA
GGTGCAGGTGCTACAGGACGATGCGCTGCGCTGGCTGGAGCGCGCGCCCACCAGCCAGGTGGATCTGGTGTTTGTCGACC
CGCCATTCGCCGCCGGGCTGTGGGCGCCGGTGCTGGAACGGCTCTCGCCGCATCTGGCTGCAGAGGCGTGGCTGTACCTG
GAAACGCCGGCCGAGCTGCCGCCGCAGGTACCGCCGGGCTGGCACCTGCACCGTGAGGGCGCCACCCGTGAGGTGCGCTA
TGCGCTGTATCGCCGGGCCGCTGCTACACTGAACGGCGATCCGACCCCGGTAGCTTCCGTATGA

Upstream 100 bases:

>100_bases
CGCAGCGCTATCATGGGCACCGGTTCTTTCATTGCCTGCCCATGACGCCTGCCGCCCCGTTGCTGCCTTGCCTTCATCAG
CCGACCACGTGCGTGCGCCG

Downstream 100 bases:

>100_bases
GCGTGGCCAACAGCCGCACCGCTGTCTATCCCGGTACCTTCGACCCGATCACCAATGGCCATATCGACCTGGTGAACCGC
GCCGCGCCGTTGTTCGAGCG

Product: hypothetical protein

Products: NA

Alternate protein names: 16S rRNA m2G966 methyltransferase; rRNA (guanine-N(2)-)-methyltransferase [H]

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MSRAARPASGAAEGQVRIVGGRWRNTRLSVPQLPGLRPSSDRVRETLFNWLLPRLAGARVLDLFAGSGALGLEAVSRGAA
HALLIERDPGLAQRLREHVARLRATEQVQVLQDDALRWLERAPTSQVDLVFVDPPFAAGLWAPVLERLSPHLAAEAWLYL
ETPAELPPQVPPGWHLHREGATREVRYALYRRAAATLNGDPTPVASV

Sequences:

>Translated_207_residues
MSRAARPASGAAEGQVRIVGGRWRNTRLSVPQLPGLRPSSDRVRETLFNWLLPRLAGARVLDLFAGSGALGLEAVSRGAA
HALLIERDPGLAQRLREHVARLRATEQVQVLQDDALRWLERAPTSQVDLVFVDPPFAAGLWAPVLERLSPHLAAEAWLYL
ETPAELPPQVPPGWHLHREGATREVRYALYRRAAATLNGDPTPVASV
>Mature_206_residues
SRAARPASGAAEGQVRIVGGRWRNTRLSVPQLPGLRPSSDRVRETLFNWLLPRLAGARVLDLFAGSGALGLEAVSRGAAH
ALLIERDPGLAQRLREHVARLRATEQVQVLQDDALRWLERAPTSQVDLVFVDPPFAAGLWAPVLERLSPHLAAEAWLYLE
TPAELPPQVPPGWHLHREGATREVRYALYRRAAATLNGDPTPVASV

Specific function: Specifically methylates the guanosine in position 966 of 16S rRNA in the assembled 30S particle [H]

COG id: COG0742

COG function: function code L; N6-adenine-specific methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmD family [H]

Homologues:

Organism=Escherichia coli, GI1789875, Length=187, Percent_Identity=48.6631016042781, Blast_Score=163, Evalue=7e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR004398 [H]

Pfam domain/function: PF03602 Cons_hypoth95 [H]

EC number: =2.1.1.171 [H]

Molecular weight: Translated: 22695; Mature: 22564

Theoretical pI: Translated: 10.81; Mature: 10.81

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRAARPASGAAEGQVRIVGGRWRNTRLSVPQLPGLRPSSDRVRETLFNWLLPRLAGARV
CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHH
LDLFAGSGALGLEAVSRGAAHALLIERDPGLAQRLREHVARLRATEQVQVLQDDALRWLE
HHHHCCCCCHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAPTSQVDLVFVDPPFAAGLWAPVLERLSPHLAAEAWLYLETPAELPPQVPPGWHLHREG
HCCCCCEEEEEECCCHHHHHHHHHHHHHCHHHHHHEEEEEECCCCCCCCCCCCCEEECCC
ATREVRYALYRRAAATLNGDPTPVASV
CHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SRAARPASGAAEGQVRIVGGRWRNTRLSVPQLPGLRPSSDRVRETLFNWLLPRLAGARV
CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHH
LDLFAGSGALGLEAVSRGAAHALLIERDPGLAQRLREHVARLRATEQVQVLQDDALRWLE
HHHHCCCCCHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAPTSQVDLVFVDPPFAAGLWAPVLERLSPHLAAEAWLYLETPAELPPQVPPGWHLHREG
HCCCCCEEEEEECCCHHHHHHHHHHHHHCHHHHHHEEEEEECCCCCCCCCCCCCEEECCC
ATREVRYALYRRAAATLNGDPTPVASV
CHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]