Click here to switch to the map view.

The map label for this gene is cydB [H]

Identifier: 66767781

GI number: 66767781

Start: 1756028

End: 1757047

Strand: Direct

Name: cydB [H]

Synonym: XC_1455

Alternate gene names: 66767781

Gene position: 1756028-1757047 (Clockwise)

Preceding gene: 66767780

Following gene: 66767786

Centisome position: 34.11

GC content: 65.49

Gene sequence:

>1020_bases
GTGTTTGTGCATCTCTCCGTTGAACTCATGCAACACCTGTCCGCCGCCGCGCTGGCCTTCACCGTGGTCACCTATGTGGT
GCTGGATGGCACCGACCTGGGGGTGGGCATGTTGTTCGCGGCCAATCGCAGCGATGCGGATCGGCACCTGATGGCCTATT
CGATCCTGCCGGTGTGGGACGGCAACGAAACCTGGCTGGTGCTGGGCGGCGGCAGCCTATTGGCGATGTTTCCCAGCGCA
TACGCCATTTTTCTCAATGCGACCTATGTGCCGCTGGTTGTCATGCTGCTGGCGCTGATCTGTCGCGGGGTCGCACTCGA
ATACCGTGACCAGCTCGGCACTGATCGCCGTCGCCGCGTGCTGGATGTGGTGTTCATGGTGGCATCGCTGTTGGCCACCT
TTTGCCAGGGCGTGGTGGCGGGCACGTATCTGGCCGGCGTTGCGCACCGTGCCGGGCAATACGCCGGCAACGGCCGGGAA
TGGCTGCAGCCGTTCCCGCTGTTCTGCGGCGTCGCGTTGGTGGTGGGCTACCTGCTGCTGGGGGCGTGTTGGCTGGTGTG
GCGCAGCGAGGGGCAGCTGCAACAGCGTGCACGGCACCAGGCGCGTGTGCTGGGCATCGTATTGGGCGCGCTGCTCACGC
TGGGCGTGGTCTGGCTTGCACGGCTGACGCCGATCTACGCGCAGCGGCTGGGCGATGCGCACATCAGCGTGCCGCTGGGT
ACATCGGTGCTCGGCCTGATGGTGGCGATGTATCTGCTGATGCGCAGCCGCCACGCATTCCTGCCCTTGTTTGCGGTGCT
GGGCGTGGTCGTGGCCACATACGCCGGTGTGCTGGCCATCGTGTATCCGATGGTGCTGCCGCCAGACATCACCCTCGCAC
AGGCGGCATCGCCCCCGGCAAGCCAGGGCGTGATGCTGTTGGCGTTCGCGGTGCTGGTGCCGTGCACGCTGGCCTACAGC
AGCTATGGCTTTTACGTGTTCCGCGGCAAGGTCAAGCCACGCGGGCATGCGGCGGAGTGA

Upstream 100 bases:

>100_bases
CCTGTTGCTGCGCGTGCTGCGTCGGCTGCCGCATGCGCGCGAGCGCGGGCCATCGCCGGGCCTGGCCGATCAGACCGGCA
ACTGATGCATTTCGTGGAGC

Downstream 100 bases:

>100_bases
GGCGTGCCTGGAGCAATCAGCGATGTAAGCCATCGCTTCGATAGGCGTCGCATCCGGCGTCTTGCCCAGACGGCGCCAGC
CACCGCTTTGCCACTGCCAC

Product: cytochrome D oxidase subunit B

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MFVHLSVELMQHLSAAALAFTVVTYVVLDGTDLGVGMLFAANRSDADRHLMAYSILPVWDGNETWLVLGGGSLLAMFPSA
YAIFLNATYVPLVVMLLALICRGVALEYRDQLGTDRRRRVLDVVFMVASLLATFCQGVVAGTYLAGVAHRAGQYAGNGRE
WLQPFPLFCGVALVVGYLLLGACWLVWRSEGQLQQRARHQARVLGIVLGALLTLGVVWLARLTPIYAQRLGDAHISVPLG
TSVLGLMVAMYLLMRSRHAFLPLFAVLGVVVATYAGVLAIVYPMVLPPDITLAQAASPPASQGVMLLAFAVLVPCTLAYS
SYGFYVFRGKVKPRGHAAE

Sequences:

>Translated_339_residues
MFVHLSVELMQHLSAAALAFTVVTYVVLDGTDLGVGMLFAANRSDADRHLMAYSILPVWDGNETWLVLGGGSLLAMFPSA
YAIFLNATYVPLVVMLLALICRGVALEYRDQLGTDRRRRVLDVVFMVASLLATFCQGVVAGTYLAGVAHRAGQYAGNGRE
WLQPFPLFCGVALVVGYLLLGACWLVWRSEGQLQQRARHQARVLGIVLGALLTLGVVWLARLTPIYAQRLGDAHISVPLG
TSVLGLMVAMYLLMRSRHAFLPLFAVLGVVVATYAGVLAIVYPMVLPPDITLAQAASPPASQGVMLLAFAVLVPCTLAYS
SYGFYVFRGKVKPRGHAAE
>Mature_339_residues
MFVHLSVELMQHLSAAALAFTVVTYVVLDGTDLGVGMLFAANRSDADRHLMAYSILPVWDGNETWLVLGGGSLLAMFPSA
YAIFLNATYVPLVVMLLALICRGVALEYRDQLGTDRRRRVLDVVFMVASLLATFCQGVVAGTYLAGVAHRAGQYAGNGRE
WLQPFPLFCGVALVVGYLLLGACWLVWRSEGQLQQRARHQARVLGIVLGALLTLGVVWLARLTPIYAQRLGDAHISVPLG
TSVLGLMVAMYLLMRSRHAFLPLFAVLGVVVATYAGVLAIVYPMVLPPDITLAQAASPPASQGVMLLAFAVLVPCTLAYS
SYGFYVFRGKVKPRGHAAE

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786954, Length=354, Percent_Identity=28.5310734463277, Blast_Score=122, Evalue=5e-29,
Organism=Escherichia coli, GI1787213, Length=363, Percent_Identity=24.2424242424242, Blast_Score=102, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 36597; Mature: 36597

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVHLSVELMQHLSAAALAFTVVTYVVLDGTDLGVGMLFAANRSDADRHLMAYSILPVWD
CEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHEEEEEEEC
GNETWLVLGGGSLLAMFPSAYAIFLNATYVPLVVMLLALICRGVALEYRDQLGTDRRRRV
CCCEEEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LDVVFMVASLLATFCQGVVAGTYLAGVAHRAGQYAGNGREWLQPFPLFCGVALVVGYLLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
GACWLVWRSEGQLQQRARHQARVLGIVLGALLTLGVVWLARLTPIYAQRLGDAHISVPLG
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCC
TSVLGLMVAMYLLMRSRHAFLPLFAVLGVVVATYAGVLAIVYPMVLPPDITLAQAASPPA
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCC
SQGVMLLAFAVLVPCTLAYSSYGFYVFRGKVKPRGHAAE
CCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCC
>Mature Secondary Structure
MFVHLSVELMQHLSAAALAFTVVTYVVLDGTDLGVGMLFAANRSDADRHLMAYSILPVWD
CEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHEEEEEEEC
GNETWLVLGGGSLLAMFPSAYAIFLNATYVPLVVMLLALICRGVALEYRDQLGTDRRRRV
CCCEEEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LDVVFMVASLLATFCQGVVAGTYLAGVAHRAGQYAGNGREWLQPFPLFCGVALVVGYLLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
GACWLVWRSEGQLQQRARHQARVLGIVLGALLTLGVVWLARLTPIYAQRLGDAHISVPLG
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCC
TSVLGLMVAMYLLMRSRHAFLPLFAVLGVVVATYAGVLAIVYPMVLPPDITLAQAASPPA
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCC
SQGVMLLAFAVLVPCTLAYSSYGFYVFRGKVKPRGHAAE
CCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]