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The map label for this gene is cydA [H]

Identifier: 66767780

GI number: 66767780

Start: 1754639

End: 1756012

Strand: Direct

Name: cydA [H]

Synonym: XC_1454

Alternate gene names: 66767780

Gene position: 1754639-1756012 (Clockwise)

Preceding gene: 66767779

Following gene: 66767781

Centisome position: 34.08

GC content: 64.99

Gene sequence:

>1374_bases
ATGCAGGCTTCCGAACACGCCTTGCTGCTGGTGCGCGGCCAGTTCGCCTTCACCATCGGCATGCACATCGTGCTGGCCGC
CTTCACCATGGGGTTGGCGAACTTCCTGGTGGTGCTGGAAGCGCTGTGGCTGCGCACGCGGCGGCGCGTGTACATGGACG
TGTACAACTACTGGTTGAAGCTCTTTTCGCTCACCACTGCCGCTGGCGTGGTGACCGGTATCCCGATGGAGTTCGTGTTC
GGCTTGCACTGGGGGCGCCTGTCCGGCGCGGCCGGTGCAGTGATCGGCCCGTTGATGTTCTTCGAAGTGCTGGTGGCGTT
TTTCCTGGAGGCCGGGTTCTTGGGCATCATGTTGTTCGGCATGAAGAAGGTCGGCCACCGTGTGCATTTCTTTGCCACCT
GCATGGTGGCACTGGGCTCGTTGGTGAGCGCGTTCTGGATCCTGTCCGCCAACTCGTGGTTGCACACGCCGGCCGGATTC
GCACGTGCTGCCGATGGCAACTTCCTGCCAGTGGACTGGCTGCGCATCATCTTCAACCCATCGTTTCCCTGGCGCATGCT
GCATATGAGCCTGGCCGCGTTGCTGGCCACTGCAGCGATCATCGCAGCGGTGGGCGCATGGCATGTGTTGCGCGATACCC
GCAATCCGGGCGCGCGGCTGATGTTTTCGATGGGCCTGTGGGTGATCGCCATTGTCGCGCCCCTGCAGTTGCTGGCCGGC
GACCTGCATGGGCGCAATACGCTGGAACATCAACCGCAAAAACTTGCCGCGATCGAAGGCAGTTGGCAGCGGCCGCCGGC
AGGCGAGGGCGAACCGCTGCGGCTGTTCGCCATTCCCGATATGCAGGCGCAGCGCAATCGCCATGAGCTGGCCATACCGC
GCCTGGGCTCGCTGTACTTGCGCCACAACTGGACCGGCACCATTGCCGGTCTGCGTGAATTTCCCCGCAGCGATCTGCCA
CCGGTGCCCATTGTGTTCTTCGCCTTCCGGGCCATGGTCGGGCTGGGCCTGTTGCTGATTGCGGTGGGCATGCTCAGTCT
GGTGCTGCGCGCGCGCGGGCGCCTTTACGAGGCGCGCTGGTTGCAACGGGTGGTGGTGGTCATGGCGCCATCGGGCATGC
TCGCCATGCTGTGCGGCTGGGTGGTGACCGAGGTCGGCCGGCAACCGTTCACCGTGTATGGGCTACTGCGCACCGCGCAC
AGCACCTCGCCACTGTCGCTGCCGATGGTTGCCAGCTCCAGCGTGGCGATCCTGGTGCTGTACCCGCTGGTCTTCGGGCT
CGGCCTGTTCCTGTTGCTGCGCGTGCTGCGTCGGCTGCCGCATGCGCGCGAGCGCGGGCCATCGCCGGGCCTGGCCGATC
AGACCGGCAACTGA

Upstream 100 bases:

>100_bases
CGATGGCCTGAAAGCCTTCGCCGCCGGCCTGGACAAGCAGGTCGACAAGCCGATCTCCGCCTTCAGCGGCAAGCCCAGCG
AGAGCTGAGCCAGGCACGCC

Downstream 100 bases:

>100_bases
TGCATTTCGTGGAGCGTGTTTGTGCATCTCTCCGTTGAACTCATGCAACACCTGTCCGCCGCCGCGCTGGCCTTCACCGT
GGTCACCTATGTGGTGCTGG

Product: cytochrome D oxidase subunit A

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 457; Mature: 457

Protein sequence:

>457_residues
MQASEHALLLVRGQFAFTIGMHIVLAAFTMGLANFLVVLEALWLRTRRRVYMDVYNYWLKLFSLTTAAGVVTGIPMEFVF
GLHWGRLSGAAGAVIGPLMFFEVLVAFFLEAGFLGIMLFGMKKVGHRVHFFATCMVALGSLVSAFWILSANSWLHTPAGF
ARAADGNFLPVDWLRIIFNPSFPWRMLHMSLAALLATAAIIAAVGAWHVLRDTRNPGARLMFSMGLWVIAIVAPLQLLAG
DLHGRNTLEHQPQKLAAIEGSWQRPPAGEGEPLRLFAIPDMQAQRNRHELAIPRLGSLYLRHNWTGTIAGLREFPRSDLP
PVPIVFFAFRAMVGLGLLLIAVGMLSLVLRARGRLYEARWLQRVVVVMAPSGMLAMLCGWVVTEVGRQPFTVYGLLRTAH
STSPLSLPMVASSSVAILVLYPLVFGLGLFLLLRVLRRLPHARERGPSPGLADQTGN

Sequences:

>Translated_457_residues
MQASEHALLLVRGQFAFTIGMHIVLAAFTMGLANFLVVLEALWLRTRRRVYMDVYNYWLKLFSLTTAAGVVTGIPMEFVF
GLHWGRLSGAAGAVIGPLMFFEVLVAFFLEAGFLGIMLFGMKKVGHRVHFFATCMVALGSLVSAFWILSANSWLHTPAGF
ARAADGNFLPVDWLRIIFNPSFPWRMLHMSLAALLATAAIIAAVGAWHVLRDTRNPGARLMFSMGLWVIAIVAPLQLLAG
DLHGRNTLEHQPQKLAAIEGSWQRPPAGEGEPLRLFAIPDMQAQRNRHELAIPRLGSLYLRHNWTGTIAGLREFPRSDLP
PVPIVFFAFRAMVGLGLLLIAVGMLSLVLRARGRLYEARWLQRVVVVMAPSGMLAMLCGWVVTEVGRQPFTVYGLLRTAH
STSPLSLPMVASSSVAILVLYPLVFGLGLFLLLRVLRRLPHARERGPSPGLADQTGN
>Mature_457_residues
MQASEHALLLVRGQFAFTIGMHIVLAAFTMGLANFLVVLEALWLRTRRRVYMDVYNYWLKLFSLTTAAGVVTGIPMEFVF
GLHWGRLSGAAGAVIGPLMFFEVLVAFFLEAGFLGIMLFGMKKVGHRVHFFATCMVALGSLVSAFWILSANSWLHTPAGF
ARAADGNFLPVDWLRIIFNPSFPWRMLHMSLAALLATAAIIAAVGAWHVLRDTRNPGARLMFSMGLWVIAIVAPLQLLAG
DLHGRNTLEHQPQKLAAIEGSWQRPPAGEGEPLRLFAIPDMQAQRNRHELAIPRLGSLYLRHNWTGTIAGLREFPRSDLP
PVPIVFFAFRAMVGLGLLLIAVGMLSLVLRARGRLYEARWLQRVVVVMAPSGMLAMLCGWVVTEVGRQPFTVYGLLRTAH
STSPLSLPMVASSSVAILVLYPLVFGLGLFLLLRVLRRLPHARERGPSPGLADQTGN

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=503, Percent_Identity=30.4174950298211, Blast_Score=200, Evalue=2e-52,
Organism=Escherichia coli, GI87081779, Length=509, Percent_Identity=29.8624754420432, Blast_Score=186, Evalue=2e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 50389; Mature: 50389

Theoretical pI: Translated: 11.58; Mature: 11.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]