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The map label for this gene is yeaT [C]

Identifier: 66767769

GI number: 66767769

Start: 1741641

End: 1742573

Strand: Reverse

Name: yeaT [C]

Synonym: XC_1443

Alternate gene names: 66767769

Gene position: 1742573-1741641 (Counterclockwise)

Preceding gene: 66767773

Following gene: 66767768

Centisome position: 33.84

GC content: 67.95

Gene sequence:

>933_bases
ATGGACCGTCTTGGCGACATCGCCCTGTTCCTGCGCGTGCTCGACCTGGGCTCGATCACCGCGGCCGCGCACAGCCTGGA
CCTCTCGGTGGCGGTGGCCAGCCAGCGCCTGAAGCGACTGGAACGCGACCTTGGCGTGCGCCTGCTGCACCGAACCACCC
GCCGCATGCATCCCACCGCGGAGGGCCAGCAACTGGCCGCACGCGGCCGCGTGCTGGTGGACGACCTGGACGCCCTGGCC
GACGACCTGCGCGAGAGCGCACAGGATGTGGGCGGCACCTTGCGGGTCACGCTGTCGGCCTCGTTCGGGCAGCAGTACAT
TTCGCCACTGCTGCCTGAATTCCAGGCGCGGCATCCGCGCCTGCGCATCAGCGCGCATCTCAGCGACGATCTGGTCGACC
TGGTCAAGCAAGGCTTCGACCTGGCAATCCGGATCGGCCCGCTCGAAGATTCCGGGTTGGTGGCCAGGCGGATCGCTCCC
AACCGCCGCACCCTCAGCGCCTCGCCCGCCTACCTGCAGCGCCACGGCACGCCACGCACGCCCGAAGAGCTGGCCCAGCA
TGCCGGCGTGCTGCTGATGGGCCGCGATGGGCGCCAGGATGTCTGGACCCTGCAAACGCCGGAAGGTGGACAGGTACGGG
TGCGCATGCAGAGCCGTTTCGAAAGCAATTTTGGCGAACTGATGCGCGATGCGGTGATCGCCGGGCAAGGCATCGCAGTG
CATTCGTACTGGCACATTGCCGAGGACCTGCGCGCCGGCCGCCTGGTCGAAGTGATGCCCGACTACCCGCCGCCCACCTC
GCAGATCAGCGCGGTCATGCCGGCGCGGCAATTGCAGCCGCCCCGCGTGCGTGCGTTTGTGGACTTTCTGCTCGAACACT
TCGGCGAGACGCCACCCTGGGAACTGCCTAGTGCTGCAAGAGGTGGTGAGTGA

Upstream 100 bases:

>100_bases
ATGGCAGGAACCCGAAGAAACAGCGCACAGCCTGCGCCGGGTGATCCTCTGCAAAAACCCCTGTTATGCTGATTCACTTT
CAATGCAAAGTTGATAATGC

Downstream 100 bases:

>100_bases
CGCCACCGCAGCGTGCCATCAGTATCCTGGGTTCAGAGCACGCTTCAGCCTACGTCGGCCGCTGAATAACTTCGCGTTGC
GATTGATTGTTTGGATCGAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MDRLGDIALFLRVLDLGSITAAAHSLDLSVAVASQRLKRLERDLGVRLLHRTTRRMHPTAEGQQLAARGRVLVDDLDALA
DDLRESAQDVGGTLRVTLSASFGQQYISPLLPEFQARHPRLRISAHLSDDLVDLVKQGFDLAIRIGPLEDSGLVARRIAP
NRRTLSASPAYLQRHGTPRTPEELAQHAGVLLMGRDGRQDVWTLQTPEGGQVRVRMQSRFESNFGELMRDAVIAGQGIAV
HSYWHIAEDLRAGRLVEVMPDYPPPTSQISAVMPARQLQPPRVRAFVDFLLEHFGETPPWELPSAARGGE

Sequences:

>Translated_310_residues
MDRLGDIALFLRVLDLGSITAAAHSLDLSVAVASQRLKRLERDLGVRLLHRTTRRMHPTAEGQQLAARGRVLVDDLDALA
DDLRESAQDVGGTLRVTLSASFGQQYISPLLPEFQARHPRLRISAHLSDDLVDLVKQGFDLAIRIGPLEDSGLVARRIAP
NRRTLSASPAYLQRHGTPRTPEELAQHAGVLLMGRDGRQDVWTLQTPEGGQVRVRMQSRFESNFGELMRDAVIAGQGIAV
HSYWHIAEDLRAGRLVEVMPDYPPPTSQISAVMPARQLQPPRVRAFVDFLLEHFGETPPWELPSAARGGE
>Mature_310_residues
MDRLGDIALFLRVLDLGSITAAAHSLDLSVAVASQRLKRLERDLGVRLLHRTTRRMHPTAEGQQLAARGRVLVDDLDALA
DDLRESAQDVGGTLRVTLSASFGQQYISPLLPEFQARHPRLRISAHLSDDLVDLVKQGFDLAIRIGPLEDSGLVARRIAP
NRRTLSASPAYLQRHGTPRTPEELAQHAGVLLMGRDGRQDVWTLQTPEGGQVRVRMQSRFESNFGELMRDAVIAGQGIAV
HSYWHIAEDLRAGRLVEVMPDYPPPTSQISAVMPARQLQPPRVRAFVDFLLEHFGETPPWELPSAARGGE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081978, Length=296, Percent_Identity=35.472972972973, Blast_Score=179, Evalue=3e-46,
Organism=Escherichia coli, GI1786401, Length=294, Percent_Identity=32.312925170068, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1789440, Length=285, Percent_Identity=29.1228070175439, Blast_Score=141, Evalue=5e-35,
Organism=Escherichia coli, GI145693193, Length=290, Percent_Identity=31.7241379310345, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1789639, Length=297, Percent_Identity=28.2828282828283, Blast_Score=131, Evalue=5e-32,
Organism=Escherichia coli, GI1787128, Length=289, Percent_Identity=29.4117647058824, Blast_Score=127, Evalue=7e-31,
Organism=Escherichia coli, GI1787589, Length=291, Percent_Identity=28.5223367697594, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI1788706, Length=286, Percent_Identity=26.2237762237762, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1789173, Length=285, Percent_Identity=27.0175438596491, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1789204, Length=125, Percent_Identity=33.6, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI157672245, Length=155, Percent_Identity=30.3225806451613, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34320; Mature: 34320

Theoretical pI: Translated: 7.43; Mature: 7.43

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRLGDIALFLRVLDLGSITAAAHSLDLSVAVASQRLKRLERDLGVRLLHRTTRRMHPTA
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
EGQQLAARGRVLVDDLDALADDLRESAQDVGGTLRVTLSASFGQQYISPLLPEFQARHPR
CCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHCCCCC
LRISAHLSDDLVDLVKQGFDLAIRIGPLEDSGLVARRIAPNRRTLSASPAYLQRHGTPRT
EEEEECCCHHHHHHHHCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCHHHHHHCCCCCC
PEELAQHAGVLLMGRDGRQDVWTLQTPEGGQVRVRMQSRFESNFGELMRDAVIAGQGIAV
HHHHHHHCCEEEECCCCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCEEE
HSYWHIAEDLRAGRLVEVMPDYPPPTSQISAVMPARQLQPPRVRAFVDFLLEHFGETPPW
HHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCHHHCCCHHHHHHHHHHHHHCCCCCCC
ELPSAARGGE
CCCCCCCCCC
>Mature Secondary Structure
MDRLGDIALFLRVLDLGSITAAAHSLDLSVAVASQRLKRLERDLGVRLLHRTTRRMHPTA
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
EGQQLAARGRVLVDDLDALADDLRESAQDVGGTLRVTLSASFGQQYISPLLPEFQARHPR
CCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHCCCCC
LRISAHLSDDLVDLVKQGFDLAIRIGPLEDSGLVARRIAPNRRTLSASPAYLQRHGTPRT
EEEEECCCHHHHHHHHCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCHHHHHHCCCCCC
PEELAQHAGVLLMGRDGRQDVWTLQTPEGGQVRVRMQSRFESNFGELMRDAVIAGQGIAV
HHHHHHHCCEEEECCCCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCEEE
HSYWHIAEDLRAGRLVEVMPDYPPPTSQISAVMPARQLQPPRVRAFVDFLLEHFGETPPW
HHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCHHHCCCHHHHHHHHHHHHHCCCCCCC
ELPSAARGGE
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]