| Definition | Xanthomonas campestris pv. campestris str. 8004 chromosome, complete genome. |
|---|---|
| Accession | NC_007086 |
| Length | 5,148,708 |
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The map label for this gene is ylmA [H]
Identifier: 66766515
GI number: 66766515
Start: 213066
End: 213902
Strand: Reverse
Name: ylmA [H]
Synonym: XC_0170
Alternate gene names: 66766515
Gene position: 213902-213066 (Counterclockwise)
Preceding gene: 66766520
Following gene: 77761073
Centisome position: 4.15
GC content: 67.14
Gene sequence:
>837_bases ATGTCTGTTGCCGTCGACTCCTCCGCCACACCCGATGCCCCGCCACTGATCGAGCTCGACCAGGCCAGCGTGATCCGCGG CCAGGTGCGCGTGCTGCACGCCTTGCGCATGCGCATTGCGCTGGGCCAGCACACCGCCATCCTGGGCCCGAACGGCTGCG GCAAATCCTCCTTCATCAAATTGATCACGCGCGAGCTGTATCCGCTGGCGCGTGGCGATGGCCAGCCCGCGGTGAAAGTG CTGGGGCAGACGCGCTGGCAGGTGGACCGCCTGCGCGCGCATCTGGGTATCGTCAGCGGCGATCTCAGCGGCAACCTGGC GCAGATGCCCGAGCTGGATGTGGAAAGCGCGGTGCTCTCCGGGTTTTTCGCCAGCTACGTGGTGCCGCCGCACCGCGAAA TCAGCGACGACATGCGCGCCCGTGCACGCGAAGCACTGGCACTGGTGCGTGCATTGCCGTTGCTGGAGCGCCCGTATGCA GAGCTGTCGGCCGGCGAGACACGGCGCGTACTGATCGCGCGTGCGCTGGTCAATCGCCCACAGGCGCTGTTGCTGGACGA ACCCTCCACCGGCCTGGATCTGGTGGCGCGGCAGCACCTGCTCGACAGCATGCGTCACCTCGCCCAGCAAGGCATCACGT TGGTGCTGGTGACCCATCACATCGAGGAAATCGTGCCGGAGATCGACCGGGTGATCCTGCTGCGCGGTGGCAGTGTCCTG GCCGATGGCAGCCGCGCGGACATGCTCACCGACGACCGTTTGTCTGCAGCGTTCGATGGCCCGGTGCGGGTGCAACGCGA TGGCGAGCGCTACTGGGCGACGGTGGGCGCTGGCTAA
Upstream 100 bases:
>100_bases GATGGCGGCAAACTTCACCCTTCGGATGCGTAGGGTGCCTCCTACATTCCTAAAGCGGTTCACACGTCTCGTTTCCTTCC CGTTACCCGATCCCACCTGC
Downstream 100 bases:
>100_bases GCGCAGCGATCAAAACGACTGCGCAGCCGCCAGGCGGGCGTTACGTTTTGTTAGCCGCTCTAAGGTTTGCGGTGCAGTGC GATGCGCGGGCTGAGCTGGC
Product: ABC transporter ATP-binding protein
Products: phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 278; Mature: 277
Protein sequence:
>278_residues MSVAVDSSATPDAPPLIELDQASVIRGQVRVLHALRMRIALGQHTAILGPNGCGKSSFIKLITRELYPLARGDGQPAVKV LGQTRWQVDRLRAHLGIVSGDLSGNLAQMPELDVESAVLSGFFASYVVPPHREISDDMRARAREALALVRALPLLERPYA ELSAGETRRVLIARALVNRPQALLLDEPSTGLDLVARQHLLDSMRHLAQQGITLVLVTHHIEEIVPEIDRVILLRGGSVL ADGSRADMLTDDRLSAAFDGPVRVQRDGERYWATVGAG
Sequences:
>Translated_278_residues MSVAVDSSATPDAPPLIELDQASVIRGQVRVLHALRMRIALGQHTAILGPNGCGKSSFIKLITRELYPLARGDGQPAVKV LGQTRWQVDRLRAHLGIVSGDLSGNLAQMPELDVESAVLSGFFASYVVPPHREISDDMRARAREALALVRALPLLERPYA ELSAGETRRVLIARALVNRPQALLLDEPSTGLDLVARQHLLDSMRHLAQQGITLVLVTHHIEEIVPEIDRVILLRGGSVL ADGSRADMLTDDRLSAAFDGPVRVQRDGERYWATVGAG >Mature_277_residues SVAVDSSATPDAPPLIELDQASVIRGQVRVLHALRMRIALGQHTAILGPNGCGKSSFIKLITRELYPLARGDGQPAVKVL GQTRWQVDRLRAHLGIVSGDLSGNLAQMPELDVESAVLSGFFASYVVPPHREISDDMRARAREALALVRALPLLERPYAE LSAGETRRVLIARALVNRPQALLLDEPSTGLDLVARQHLLDSMRHLAQQGITLVLVTHHIEEIVPEIDRVILLRGGSVLA DGSRADMLTDDRLSAAFDGPVRVQRDGERYWATVGAG
Specific function: Part Of The Binding-Protein-Dependent Transport System For Spermidine/Putrescine. Probably Responsible For Energy Coupling To The Transport System. [C]
COG id: COG1119
COG function: function code P; ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA
Gene ontology:
Cell location: Inner Membrane-Associated [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI4505771, Length=233, Percent_Identity=31.3304721030043, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI9961252, Length=233, Percent_Identity=31.3304721030043, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI42741659, Length=232, Percent_Identity=31.8965517241379, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI9961250, Length=240, Percent_Identity=30.4166666666667, Blast_Score=85, Evalue=7e-17, Organism=Homo sapiens, GI255708477, Length=233, Percent_Identity=28.3261802575107, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI21536378, Length=235, Percent_Identity=28.936170212766, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI148612844, Length=238, Percent_Identity=29.4117647058824, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI27881501, Length=225, Percent_Identity=25.3333333333333, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI30795238, Length=225, Percent_Identity=25.3333333333333, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI42490749, Length=241, Percent_Identity=26.9709543568465, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI21536376, Length=206, Percent_Identity=29.126213592233, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI116734710, Length=270, Percent_Identity=27.4074074074074, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI31657092, Length=214, Percent_Identity=29.4392523364486, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI1787370, Length=267, Percent_Identity=26.2172284644195, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1790544, Length=267, Percent_Identity=28.8389513108614, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1787712, Length=224, Percent_Identity=31.6964285714286, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1788225, Length=227, Percent_Identity=32.15859030837, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1787029, Length=234, Percent_Identity=33.3333333333333, Blast_Score=91, Evalue=6e-20, Organism=Escherichia coli, GI87081709, Length=262, Percent_Identity=25.9541984732824, Blast_Score=88, Evalue=5e-19, Organism=Escherichia coli, GI1786975, Length=225, Percent_Identity=31.5555555555556, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1786872, Length=258, Percent_Identity=29.0697674418605, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1788165, Length=222, Percent_Identity=31.5315315315315, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1787089, Length=247, Percent_Identity=29.5546558704453, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1790739, Length=245, Percent_Identity=27.3469387755102, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1788761, Length=229, Percent_Identity=31.0043668122271, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1789672, Length=236, Percent_Identity=29.2372881355932, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI87081791, Length=253, Percent_Identity=27.6679841897233, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI1786345, Length=242, Percent_Identity=26.4462809917355, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI48994943, Length=244, Percent_Identity=27.0491803278689, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI87082268, Length=250, Percent_Identity=26, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1786319, Length=231, Percent_Identity=26.4069264069264, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1786803, Length=244, Percent_Identity=27.4590163934426, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1790467, Length=247, Percent_Identity=28.3400809716599, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI87081782, Length=236, Percent_Identity=27.1186440677966, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI87082267, Length=226, Percent_Identity=24.7787610619469, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1789991, Length=248, Percent_Identity=26.2096774193548, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI1788450, Length=245, Percent_Identity=29.3877551020408, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI1789593, Length=240, Percent_Identity=26.6666666666667, Blast_Score=71, Evalue=9e-14, Organism=Escherichia coli, GI48995001, Length=214, Percent_Identity=28.9719626168224, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1787759, Length=255, Percent_Identity=28.6274509803922, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1786398, Length=242, Percent_Identity=24.7933884297521, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1786563, Length=209, Percent_Identity=31.1004784688995, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1790525, Length=243, Percent_Identity=26.3374485596708, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1788002, Length=222, Percent_Identity=29.2792792792793, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1787164, Length=221, Percent_Identity=28.9592760180996, Blast_Score=68, Evalue=8e-13, Organism=Escherichia coli, GI1790190, Length=115, Percent_Identity=28.695652173913, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1789864, Length=242, Percent_Identity=24.7933884297521, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787547, Length=229, Percent_Identity=27.9475982532751, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787105, Length=224, Percent_Identity=29.0178571428571, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1789032, Length=228, Percent_Identity=25.4385964912281, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1788897, Length=101, Percent_Identity=34.6534653465347, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1787758, Length=225, Percent_Identity=27.5555555555556, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI87081834, Length=223, Percent_Identity=27.8026905829596, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1787500, Length=223, Percent_Identity=24.2152466367713, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1789891, Length=241, Percent_Identity=24.896265560166, Blast_Score=62, Evalue=6e-11, Organism=Escherichia coli, GI1787792, Length=99, Percent_Identity=34.3434343434343, Blast_Score=61, Evalue=7e-11, Organism=Escherichia coli, GI1789873, Length=213, Percent_Identity=27.2300469483568, Blast_Score=61, Evalue=9e-11, Organism=Caenorhabditis elegans, GI17558664, Length=235, Percent_Identity=28.5106382978723, Blast_Score=84, Evalue=9e-17, Organism=Caenorhabditis elegans, GI193211015, Length=230, Percent_Identity=27.3913043478261, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI193211017, Length=230, Percent_Identity=27.3913043478261, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI71996809, Length=234, Percent_Identity=25.2136752136752, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI71984940, Length=252, Percent_Identity=25.3968253968254, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI193209708, Length=236, Percent_Identity=27.1186440677966, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI212646699, Length=232, Percent_Identity=26.7241379310345, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI115533608, Length=238, Percent_Identity=26.4705882352941, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17569143, Length=251, Percent_Identity=25.4980079681275, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17565938, Length=238, Percent_Identity=25.2100840336134, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI71996550, Length=241, Percent_Identity=28.2157676348548, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17565586, Length=220, Percent_Identity=28.1818181818182, Blast_Score=64, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6323217, Length=231, Percent_Identity=24.6753246753247, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI17136662, Length=246, Percent_Identity=28.0487804878049, Blast_Score=84, Evalue=9e-17, Organism=Drosophila melanogaster, GI281363262, Length=231, Percent_Identity=30.3030303030303, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI24653245, Length=231, Percent_Identity=30.3030303030303, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI85726357, Length=236, Percent_Identity=27.9661016949153, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI281362751, Length=234, Percent_Identity=26.9230769230769, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24650853, Length=234, Percent_Identity=26.9230769230769, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24650855, Length=234, Percent_Identity=26.9230769230769, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24659289, Length=235, Percent_Identity=24.6808510638298, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI85725262, Length=222, Percent_Identity=28.3783783783784, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24582014, Length=230, Percent_Identity=24.7826086956522, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI24582012, Length=230, Percent_Identity=24.7826086956522, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI28574533, Length=235, Percent_Identity=24.6808510638298, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI28574744, Length=223, Percent_Identity=26.0089686098655, Blast_Score=65, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 30221; Mature: 30090
Theoretical pI: Translated: 6.97; Mature: 6.97
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVAVDSSATPDAPPLIELDQASVIRGQVRVLHALRMRIALGQHTAILGPNGCGKSSFIK CCEECCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH LITRELYPLARGDGQPAVKVLGQTRWQVDRLRAHLGIVSGDLSGNLAQMPELDVESAVLS HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHCCCCCCHHHHHHH GFFASYVVPPHREISDDMRARAREALALVRALPLLERPYAELSAGETRRVLIARALVNRP HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHCCC QALLLDEPSTGLDLVARQHLLDSMRHLAQQGITLVLVTHHIEEIVPEIDRVILLRGGSVL CEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHEEEEEECCCEE ADGSRADMLTDDRLSAAFDGPVRVQRDGERYWATVGAG ECCCCCCCCCCCHHHHCCCCCEEEEECCCEEEEEECCC >Mature Secondary Structure SVAVDSSATPDAPPLIELDQASVIRGQVRVLHALRMRIALGQHTAILGPNGCGKSSFIK CEECCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH LITRELYPLARGDGQPAVKVLGQTRWQVDRLRAHLGIVSGDLSGNLAQMPELDVESAVLS HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHCCCCCCHHHHHHH GFFASYVVPPHREISDDMRARAREALALVRALPLLERPYAELSAGETRRVLIARALVNRP HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHCCC QALLLDEPSTGLDLVARQHLLDSMRHLAQQGITLVLVTHHIEEIVPEIDRVILLRGGSVL CEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHEEEEEECCCEE ADGSRADMLTDDRLSAAFDGPVRVQRDGERYWATVGAG ECCCCCCCCCCCHHHHCCCCCEEEEECCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]
Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]