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The map label for this gene is arnC [H]

Identifier: 66048331

GI number: 66048331

Start: 6059118

End: 6059861

Strand: Direct

Name: arnC [H]

Synonym: Psyr_5107

Alternate gene names: 66048331

Gene position: 6059118-6059861 (Clockwise)

Preceding gene: 66048330

Following gene: 66048332

Centisome position: 99.43

GC content: 62.23

Gene sequence:

>744_bases
ATGACCACGCCCACTTTTCTCTCCGTCGTGATCCCGGCCAAAAACGAAGCCGATAACCTGCCCAGCCTGATAAAAGAAAT
TTGCACAGCGCTGGACGGGGAACGCTACGAGATACTGGTCGTTGACGACGGCAGCACAGACGACACCTTGAAAGTGCTGA
CGCACCTCAAGGACAGCGGGCTGACCGTGTTGCGGATCCTGCGCCACGAGCGATCACTCGGGCAGAGCACCTCGGTCTAT
CACGCAGCACTGGCAGCCAACGGCACCTGGCTGGCAACCCTGGACGGTGACGGTCAGAACGACCCGGCGGACATTCCAGG
TATGTTGGCGCTGGTACGCGCTCACGCAACGGGCTCGGAGGCGATACAGCTGGTGGCCGGTCACCGGGTGAATCGGCGCG
ATACCGCCAGCAAACGCTGGGCCTCGCGCTTTGCAAACGGCCTGCGCAGCCGGCTTCTCAAGGACGCGACTCCAGACACC
GGGTGCGGCCTGAAACTGATCGAGCGAGCCGCGTTTCTGCGCCTGCCGTACTTCGACCATATGCACCGGTTCATTCCAGC
GCTGATTCAGCGACATAACGGCCGTATGGTCACGCACCCCGTCAACCACCGTCATCGCCAGGCTGGCGTGTCCAAGTACG
GCAACCTGGACCGCGCGCTGGTGGGCATTCTTGATCTGGTCGGCGTCTGGTGGCTGATCCGTCGGACTCGCCTGGATGTT
CAGGCACAGGAACTGCGGCCATGA

Upstream 100 bases:

>100_bases
CACAGGTCTCGGTCGACACCGGCGTCAGGGCCTTCGTCGACTGGTATCGGGAGCACTATCAGGCCCGGATCTGCGAGCCA
CTTCAATAACAAGGACTTCC

Downstream 100 bases:

>100_bases
AGCCGGACAACGAGACTTTCTGGCTGATCCTCGGCTTTGTCGGGCAGGCGGTTTTTACCGGCCGCTTTGTCCTGCAATGG
CTGTACAGCGAATTCAAGAA

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: Undecaprenyl-phosphate Ara4FN transferase; Ara4FN transferase [H]

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MTTPTFLSVVIPAKNEADNLPSLIKEICTALDGERYEILVVDDGSTDDTLKVLTHLKDSGLTVLRILRHERSLGQSTSVY
HAALAANGTWLATLDGDGQNDPADIPGMLALVRAHATGSEAIQLVAGHRVNRRDTASKRWASRFANGLRSRLLKDATPDT
GCGLKLIERAAFLRLPYFDHMHRFIPALIQRHNGRMVTHPVNHRHRQAGVSKYGNLDRALVGILDLVGVWWLIRRTRLDV
QAQELRP

Sequences:

>Translated_247_residues
MTTPTFLSVVIPAKNEADNLPSLIKEICTALDGERYEILVVDDGSTDDTLKVLTHLKDSGLTVLRILRHERSLGQSTSVY
HAALAANGTWLATLDGDGQNDPADIPGMLALVRAHATGSEAIQLVAGHRVNRRDTASKRWASRFANGLRSRLLKDATPDT
GCGLKLIERAAFLRLPYFDHMHRFIPALIQRHNGRMVTHPVNHRHRQAGVSKYGNLDRALVGILDLVGVWWLIRRTRLDV
QAQELRP
>Mature_246_residues
TTPTFLSVVIPAKNEADNLPSLIKEICTALDGERYEILVVDDGSTDDTLKVLTHLKDSGLTVLRILRHERSLGQSTSVYH
AALAANGTWLATLDGDGQNDPADIPGMLALVRAHATGSEAIQLVAGHRVNRRDTASKRWASRFANGLRSRLLKDATPDTG
CGLKLIERAAFLRLPYFDHMHRFIPALIQRHNGRMVTHPVNHRHRQAGVSKYGNLDRALVGILDLVGVWWLIRRTRLDVQ
AQELRP

Specific function: Catalyzes the transfer of 4-deoxy-4-formamido-L- arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1788588, Length=223, Percent_Identity=32.7354260089686, Blast_Score=106, Evalue=2e-24,
Organism=Saccharomyces cerevisiae, GI6325029, Length=202, Percent_Identity=28.7128712871287, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022857
- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: =2.7.8.30 [H]

Molecular weight: Translated: 27439; Mature: 27308

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTPTFLSVVIPAKNEADNLPSLIKEICTALDGERYEILVVDDGSTDDTLKVLTHLKDSG
CCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHCCCC
LTVLRILRHERSLGQSTSVYHAALAANGTWLATLDGDGQNDPADIPGMLALVRAHATGSE
HHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCHH
AIQLVAGHRVNRRDTASKRWASRFANGLRSRLLKDATPDTGCGLKLIERAAFLRLPYFDH
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHH
MHRFIPALIQRHNGRMVTHPVNHRHRQAGVSKYGNLDRALVGILDLVGVWWLIRRTRLDV
HHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC
QAQELRP
CHHHCCC
>Mature Secondary Structure 
TTPTFLSVVIPAKNEADNLPSLIKEICTALDGERYEILVVDDGSTDDTLKVLTHLKDSG
CCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHCCCC
LTVLRILRHERSLGQSTSVYHAALAANGTWLATLDGDGQNDPADIPGMLALVRAHATGSE
HHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCHH
AIQLVAGHRVNRRDTASKRWASRFANGLRSRLLKDATPDTGCGLKLIERAAFLRLPYFDH
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHH
MHRFIPALIQRHNGRMVTHPVNHRHRQAGVSKYGNLDRALVGILDLVGVWWLIRRTRLDV
HHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC
QAQELRP
CHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA