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The map label for this gene is rhsD [H]

Identifier: 66048221

GI number: 66048221

Start: 5926344

End: 5928011

Strand: Direct

Name: rhsD [H]

Synonym: Psyr_4997

Alternate gene names: 66048221

Gene position: 5926344-5928011 (Clockwise)

Preceding gene: 66048220

Following gene: 66048222

Centisome position: 97.25

GC content: 58.81

Gene sequence:

>1668_bases
GTGCAGCGCTTTCAAGATTGTTCGGGTAAAAGCACTTATTACCGCTACGACGAGCGCCACCACCTGGTGGCCGTCACCGA
TGCCCTGAACAACACCACCACGCTGGAGCGCAAACCCGACGGCGAAGTGCTGCGCATCAACCATCCGGATGGCACCAGCG
AGACCTTTACCTACAACGAACTGGGCCAGGTCCTGACCCACACCGATGGCAAAGGCCAGACCACCCAACTGCTGCGCAAC
GGCCGTGGCCTGCCTAAATGGCGACAGGATGCCAAAGGGCAGACCATCACCTACGAATACGACAAGGCCATTCGCCTCGT
CGCCCTGACCAACGAAAACGATGCGACCTACAACTTTGCCTACGACGACGCAGACCGTCTGATCGAAGAAAAACGCATCG
ATAACCTCACCCGCCGTTTCAGCTACAACCTCGGCGGGCACCTGACACAGGTCGAGGAAATCGGCTACGGCGAGAAAGGC
GAACAGCCACGGCGCAGCACCCATCTGGAGCGCGACCCGATTGGTCGCCTGCTGGCCAAGCTAAACGACGACGCGCGCCA
GGACTACGCCTACGACGACGGCGACCGACTTCTGTCAATCGAGCGCAAGCCGACGGACACCGGCAGAAAACTGGGCATCA
CCGCTGAAAAGATCGACTTCGCCTACGACCTGCTCGGCCGACTCGTCAAAGAAACCACTCCTCAGGGCGCGCTGGCCTAC
GAGTACGATCCGCTCAGCAACCTGACCACTCTAACCCTGCCTACCGGTCAACACCTGAACCACCTGTACTACGGCAGCGG
TCACCTGCACCAGTTGAACCTCGATGGCCAGTTGATCAGCGACATGGAACGCGACGATCTCCATCGCGAGATCTATCGCA
CCCAAGGCAAGCTCACCAGTTGCTTCGGTTACGACAGCATGGGCCGCAAAGCGTGGCAGTACGCCACAACTCTGCCCGCG
GAAAAACTGTCACAAATCCAGAACCCGCTCATAAAGCCAGAGCGTTACGTCGAACACGCCTACAACCCCATTCACCGCCG
CTACGAATACGACCCGGCTGGCGAATTGAGCCGCACCCTCGACAAGCTGCGCGGCGAAACCCAGTACGAATACGAAGCCA
ACGGCCAGTTGCTGGCACGCAACACCGGCCGAGTGGTCGATGGCGAAGAGTTCCGCTACGACGCTGCGGCCAACCGCCTC
AACTTCAACACCAGTCGTTTCGATCACGTCAAAGACAACCGCCTCAAACAGTGGGCGAACCACGAATACAAATACGACGT
CTGGGGCAACCTGATCGAAAAAGTCGTCGGCATCGTGCGCTGGCAGACCTTCACCTACGACTGCGAAAACCGTCTGGTCA
AAACCGAGACCATAGCTGATACGCAGGTGGAAAGCACCAGCAGCTATCAGTACGACAGTCTGGGCCGAAGAGTCGCCAAA
CAGTCCGAGATCAAAGGCCACACCGACCACAAACGTTTCCTCTGGCAAGGCCTGCGGATGCTGCGTGAGGAAAGTCCGGG
ACAGAGCAGCCTGTACCTCTACGAGCCCGGCAGCTATGCGCCGCTGGCCCGCGTGGATGAGAAAGAGGGCGAGGTAGAGA
ACAGGGTCTACTACTTCCACACCGACCAGCACCTAACCATCCGTATTACGACATCGGCAGCCGTCTGA

Upstream 100 bases:

>100_bases
GCCACAGCAACGCGCTTGACCTGCCTACGAGTACCGCAGGGAAACCATCGTCGACCCGACGCTCAAGTCCAAATACCTGT
GGTGGAACAACCTGGCGCAA

Downstream 100 bases:

>100_bases
ACCTCAGCACCGGCCGCTTTGATTAGGTCACACGTCAAATGCAACCATCTAAAATAGTGAGACGACTGGTCATACACTTA
AATATTTAATGTATGATCTT

Product: YD repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 555; Mature: 555

Protein sequence:

>555_residues
MQRFQDCSGKSTYYRYDERHHLVAVTDALNNTTTLERKPDGEVLRINHPDGTSETFTYNELGQVLTHTDGKGQTTQLLRN
GRGLPKWRQDAKGQTITYEYDKAIRLVALTNENDATYNFAYDDADRLIEEKRIDNLTRRFSYNLGGHLTQVEEIGYGEKG
EQPRRSTHLERDPIGRLLAKLNDDARQDYAYDDGDRLLSIERKPTDTGRKLGITAEKIDFAYDLLGRLVKETTPQGALAY
EYDPLSNLTTLTLPTGQHLNHLYYGSGHLHQLNLDGQLISDMERDDLHREIYRTQGKLTSCFGYDSMGRKAWQYATTLPA
EKLSQIQNPLIKPERYVEHAYNPIHRRYEYDPAGELSRTLDKLRGETQYEYEANGQLLARNTGRVVDGEEFRYDAAANRL
NFNTSRFDHVKDNRLKQWANHEYKYDVWGNLIEKVVGIVRWQTFTYDCENRLVKTETIADTQVESTSSYQYDSLGRRVAK
QSEIKGHTDHKRFLWQGLRMLREESPGQSSLYLYEPGSYAPLARVDEKEGEVENRVYYFHTDQHLTIRITTSAAV

Sequences:

>Translated_555_residues
MQRFQDCSGKSTYYRYDERHHLVAVTDALNNTTTLERKPDGEVLRINHPDGTSETFTYNELGQVLTHTDGKGQTTQLLRN
GRGLPKWRQDAKGQTITYEYDKAIRLVALTNENDATYNFAYDDADRLIEEKRIDNLTRRFSYNLGGHLTQVEEIGYGEKG
EQPRRSTHLERDPIGRLLAKLNDDARQDYAYDDGDRLLSIERKPTDTGRKLGITAEKIDFAYDLLGRLVKETTPQGALAY
EYDPLSNLTTLTLPTGQHLNHLYYGSGHLHQLNLDGQLISDMERDDLHREIYRTQGKLTSCFGYDSMGRKAWQYATTLPA
EKLSQIQNPLIKPERYVEHAYNPIHRRYEYDPAGELSRTLDKLRGETQYEYEANGQLLARNTGRVVDGEEFRYDAAANRL
NFNTSRFDHVKDNRLKQWANHEYKYDVWGNLIEKVVGIVRWQTFTYDCENRLVKTETIADTQVESTSSYQYDSLGRRVAK
QSEIKGHTDHKRFLWQGLRMLREESPGQSSLYLYEPGSYAPLARVDEKEGEVENRVYYFHTDQHLTIRITTSAAV
>Mature_555_residues
MQRFQDCSGKSTYYRYDERHHLVAVTDALNNTTTLERKPDGEVLRINHPDGTSETFTYNELGQVLTHTDGKGQTTQLLRN
GRGLPKWRQDAKGQTITYEYDKAIRLVALTNENDATYNFAYDDADRLIEEKRIDNLTRRFSYNLGGHLTQVEEIGYGEKG
EQPRRSTHLERDPIGRLLAKLNDDARQDYAYDDGDRLLSIERKPTDTGRKLGITAEKIDFAYDLLGRLVKETTPQGALAY
EYDPLSNLTTLTLPTGQHLNHLYYGSGHLHQLNLDGQLISDMERDDLHREIYRTQGKLTSCFGYDSMGRKAWQYATTLPA
EKLSQIQNPLIKPERYVEHAYNPIHRRYEYDPAGELSRTLDKLRGETQYEYEANGQLLARNTGRVVDGEEFRYDAAANRL
NFNTSRFDHVKDNRLKQWANHEYKYDVWGNLIEKVVGIVRWQTFTYDCENRLVKTETIADTQVESTSSYQYDSLGRRVAK
QSEIKGHTDHKRFLWQGLRMLREESPGQSSLYLYEPGSYAPLARVDEKEGEVENRVYYFHTDQHLTIRITTSAAV

Specific function: Rhs elements have a nonessential function. They may play an important role in the natural ecology of the cell [H]

COG id: COG3209

COG function: function code M; Rhs family protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RHS family [H]

Homologues:

Organism=Escherichia coli, GI1786706, Length=573, Percent_Identity=29.1448516579407, Blast_Score=141, Evalue=9e-35,
Organism=Escherichia coli, GI1786917, Length=565, Percent_Identity=27.2566371681416, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI48994942, Length=562, Percent_Identity=26.8683274021352, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1790020, Length=562, Percent_Identity=26.8683274021352, Blast_Score=127, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001826
- InterPro:   IPR022385
- InterPro:   IPR006530 [H]

Pfam domain/function: PF03527 RHS; PF05593 RHS_repeat [H]

EC number: NA

Molecular weight: Translated: 64291; Mature: 64291

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRFQDCSGKSTYYRYDERHHLVAVTDALNNTTTLERKPDGEVLRINHPDGTSETFTYNE
CCCCCCCCCCCCEEEECCCCEEEEEEECCCCCEEECCCCCCCEEEEECCCCCCCCEEHHH
LGQVLTHTDGKGQTTQLLRNGRGLPKWRQDAKGQTITYEYDKAIRLVALTNENDATYNFA
HHHHHHCCCCCCHHHHHHHCCCCCCHHHHCCCCCEEEEEECCEEEEEEEECCCCCEEEEE
YDDADRLIEEKRIDNLTRRFSYNLGGHLTQVEEIGYGEKGEQPRRSTHLERDPIGRLLAK
ECCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCHHHCCCCCCHHHHHHHH
LNDDARQDYAYDDGDRLLSIERKPTDTGRKLGITAEKIDFAYDLLGRLVKETTPQGALAY
HCCHHHHCCCCCCCCEEEEEECCCCCCCCEECCCHHHHHHHHHHHHHHHHHCCCCCCEEE
EYDPLSNLTTLTLPTGQHLNHLYYGSGHLHQLNLDGQLISDMERDDLHREIYRTQGKLTS
ECCCCCCCEEEEECCCCCCCEEEECCCCEEEECCCCHHHHHCHHHHHHHHHHHHCCCEEE
CFGYDSMGRKAWQYATTLPAEKLSQIQNPLIKPERYVEHAYNPIHRRYEYDPAGELSRTL
ECCCCHHCHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCHHHHCCCCCCCHHHHHHH
DKLRGETQYEYEANGQLLARNTGRVVDGEEFRYDAAANRLNFNTSRFDHVKDNRLKQWAN
HHHCCCCEEEEECCCEEEEECCCCEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC
HEYKYDVWGNLIEKVVGIVRWQTFTYDCENRLVKTETIADTQVESTSSYQYDSLGRRVAK
CCEEEHHHHHHHHHHHHHHHHEEEEEECCCCEEEEEHHCCCCCCCCCCCCHHHHHHHHHH
QSEIKGHTDHKRFLWQGLRMLREESPGQSSLYLYEPGSYAPLARVDEKEGEVENRVYYFH
HHHCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHCCCCCCCCCCEEEEEE
TDQHLTIRITTSAAV
CCCEEEEEEEECCCC
>Mature Secondary Structure
MQRFQDCSGKSTYYRYDERHHLVAVTDALNNTTTLERKPDGEVLRINHPDGTSETFTYNE
CCCCCCCCCCCCEEEECCCCEEEEEEECCCCCEEECCCCCCCEEEEECCCCCCCCEEHHH
LGQVLTHTDGKGQTTQLLRNGRGLPKWRQDAKGQTITYEYDKAIRLVALTNENDATYNFA
HHHHHHCCCCCCHHHHHHHCCCCCCHHHHCCCCCEEEEEECCEEEEEEEECCCCCEEEEE
YDDADRLIEEKRIDNLTRRFSYNLGGHLTQVEEIGYGEKGEQPRRSTHLERDPIGRLLAK
ECCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCHHHCCCCCCHHHHHHHH
LNDDARQDYAYDDGDRLLSIERKPTDTGRKLGITAEKIDFAYDLLGRLVKETTPQGALAY
HCCHHHHCCCCCCCCEEEEEECCCCCCCCEECCCHHHHHHHHHHHHHHHHHCCCCCCEEE
EYDPLSNLTTLTLPTGQHLNHLYYGSGHLHQLNLDGQLISDMERDDLHREIYRTQGKLTS
ECCCCCCCEEEEECCCCCCCEEEECCCCEEEECCCCHHHHHCHHHHHHHHHHHHCCCEEE
CFGYDSMGRKAWQYATTLPAEKLSQIQNPLIKPERYVEHAYNPIHRRYEYDPAGELSRTL
ECCCCHHCHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCHHHHCCCCCCCHHHHHHH
DKLRGETQYEYEANGQLLARNTGRVVDGEEFRYDAAANRLNFNTSRFDHVKDNRLKQWAN
HHHCCCCEEEEECCCEEEEECCCCEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC
HEYKYDVWGNLIEKVVGIVRWQTFTYDCENRLVKTETIADTQVESTSSYQYDSLGRRVAK
CCEEEHHHHHHHHHHHHHHHHEEEEEECCCCEEEEEHHCCCCCCCCCCCCHHHHHHHHHH
QSEIKGHTDHKRFLWQGLRMLREESPGQSSLYLYEPGSYAPLARVDEKEGEVENRVYYFH
HHHCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHCCCCCCCCCCEEEEEE
TDQHLTIRITTSAAV
CCCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1766878; 9278503; 2644231; 2403547; 7934896 [H]