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The map label for this gene is hcp1 [H]

Identifier: 66048189

GI number: 66048189

Start: 5889737

End: 5890255

Strand: Direct

Name: hcp1 [H]

Synonym: Psyr_4965

Alternate gene names: 66048189

Gene position: 5889737-5890255 (Clockwise)

Preceding gene: 66048188

Following gene: 66048190

Centisome position: 96.65

GC content: 57.8

Gene sequence:

>519_bases
ATGGCATTTGACGCATACATCCAAATCGATGGCATCCCAGGCGAAGTTCTGGACGACAAGCACAAGGACTGGATCGAAGT
GTTGGGCTACGAGTTCGGCGCTACCCAGGCCACCTCGGCGACCGCCAGTTCTTCGGGCGGTGCTTCGTCCGAGCGCGTTG
CACTGAGCGACTTCAGCATCCGCAAGTCTGTGGACAAGGCTTCCGCCAAGCTGTTCGAAGCGTGCTGCAAGGGCACTCAC
ATCGCCAAGATCCAGCTGAACGTCAACCGTGCAGGCGGCGACAAGCTGACCTACCTGACCATCAACCTGGAAGAAGTGGT
TGTGTCTTCCGTGAAGGCGGTTGCTGGCGGTAGCCAGAAAGGCGAAGACAACGCAGTCAGCGATCTGCCGATTGAAGAAA
TCAGCTTCAACTTCGCTCGCATCAAGACCACCTACACCCAGCAGAGCCGTTCCGATGGCCAGGGTGGCGGTAACGTCACT
GGCGGCTGGGACCGCACTGCGAACAAAGTATTCGCATAA

Upstream 100 bases:

>100_bases
GGCAAGAGAACCTTTCTTGATCGTTTCAGGAAGGTTAATCAAAAGGGCCGTGTTCTGTCCGCAGACGCCACGGCTTTAAA
TGAAGAAGGAGAAGCAGAAA

Downstream 100 bases:

>100_bases
GTCCGTGACACATCGGGTCGCGCAAGCGGCCCGTCTTCAACACCGTGTCTGCCCAGGCACGGTGTTCTTTTATCCTCTGA
TCAGAGTTGACTATGTCTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MAFDAYIQIDGIPGEVLDDKHKDWIEVLGYEFGATQATSATASSSGGASSERVALSDFSIRKSVDKASAKLFEACCKGTH
IAKIQLNVNRAGGDKLTYLTINLEEVVVSSVKAVAGGSQKGEDNAVSDLPIEEISFNFARIKTTYTQQSRSDGQGGGNVT
GGWDRTANKVFA

Sequences:

>Translated_172_residues
MAFDAYIQIDGIPGEVLDDKHKDWIEVLGYEFGATQATSATASSSGGASSERVALSDFSIRKSVDKASAKLFEACCKGTH
IAKIQLNVNRAGGDKLTYLTINLEEVVVSSVKAVAGGSQKGEDNAVSDLPIEEISFNFARIKTTYTQQSRSDGQGGGNVT
GGWDRTANKVFA
>Mature_171_residues
AFDAYIQIDGIPGEVLDDKHKDWIEVLGYEFGATQATSATASSSGGASSERVALSDFSIRKSVDKASAKLFEACCKGTHI
AKIQLNVNRAGGDKLTYLTINLEEVVVSSVKAVAGGSQKGEDNAVSDLPIEEISFNFARIKTTYTQQSRSDGQGGGNVTG
GWDRTANKVFA

Specific function: Required for assembly of the protein secretion apparatus HSI-I. Actively secreted during chronic infection of cystic fibrosis patients [H]

COG id: COG3157

COG function: function code S; Hemolysin-coregulated protein (uncharacterized)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hcp1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017728
- InterPro:   IPR008514 [H]

Pfam domain/function: PF05638 DUF796 [H]

EC number: NA

Molecular weight: Translated: 18244; Mature: 18113

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFDAYIQIDGIPGEVLDDKHKDWIEVLGYEFGATQATSATASSSGGASSERVALSDFSI
CCEEEEEEECCCCCHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHH
RKSVDKASAKLFEACCKGTHIAKIQLNVNRAGGDKLTYLTINLEEVVVSSVKAVAGGSQK
HHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHCCCCCC
GEDNAVSDLPIEEISFNFARIKTTYTQQSRSDGQGGGNVTGGWDRTANKVFA
CCCCCCCCCCHHHHCCCCCEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AFDAYIQIDGIPGEVLDDKHKDWIEVLGYEFGATQATSATASSSGGASSERVALSDFSI
CEEEEEEECCCCCHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHH
RKSVDKASAKLFEACCKGTHIAKIQLNVNRAGGDKLTYLTINLEEVVVSSVKAVAGGSQK
HHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHCCCCCC
GEDNAVSDLPIEEISFNFARIKTTYTQQSRSDGQGGGNVTGGWDRTANKVFA
CCCCCCCCCCHHHHCCCCCEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]