| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is metK [H]
Identifier: 66048018
GI number: 66048018
Start: 5682740
End: 5683930
Strand: Direct
Name: metK [H]
Synonym: Psyr_4794
Alternate gene names: 66048018
Gene position: 5682740-5683930 (Clockwise)
Preceding gene: 66048017
Following gene: 66048020
Centisome position: 93.26
GC content: 61.29
Gene sequence:
>1191_bases ATGAGCGAATACTCACTTTTCACCTCCGAGTCCGTGTCCGAAGGGCATCCGGACAAGATCGCCGACCAGATTTCCGACGC GGTTCTGGACGCCATCATCGCTGAAGACAAATACGCCCGTGTAGCGTGCGAAACACTGGTCAAGACCGGTGTGGCGATCA TCGCTGGCGAAGTGTCGACTTCGGCCTGGGTCGATCTGGAAGACATCGTGCGTAACGTCATCCTCGACATCGGCTACAAC AGCTCCGACGTCGGTTTCGACGGCGCGACCTGCGGCGTGATGAACATCATCGGCAAGCAGTCGGTAGACATCGCCCAGGG CGTTGACCGCAGCAAGCCAGAAGATCAGGGCGCTGGCGACCAGGGCCTGATGTTCGGCTATGCCAGCAACGAGACTGACG TGCTGATGCCAGCGCCGATCACCTTCTCCCATCAGTTGGTGCAGCGTCAGGCCGAAGCGCGTAAATCCGGCCTGCTGCCG TGGCTGCGCCCGGATGCCAAATCCCAGGTCACCTGCCGTTACGAAAACGGCAAGGTGGTCGGCGTCGACGCTATCGTATT GTCGACCCAGCACAACCCGGATGTGTCGTACAAGGACCTGCGCGAAGGCGTGATGGAGCTGATCGTCAAGCACGTCATCC CTGCGCACCTGCTGCACAAGGACACCCAGTTCCACATCAACCCGACCGGCAACTTCATCATCGGTGGCCCGGTAGGCGAC TGCGGTCTGACCGGCCGCAAGATCATCGTCGACACCTACGGCGGCATGGCCCGTCACGGCGGCGGTGCTTTCTCCGGCAA GGACCCATCGAAGGTTGACCGTTCGGCTGCCTACGCCGGTCGCTACGTCGCCAAGAACATCGTCGCTGCCGGCCTGGCCG AGCGTTGCGAGATTCAGGTGTCCTACGCCATCGGCGTCGCTCAACCGACTTCGATCTCGCTGAACACGTTCGGCACCGGC AAGCTGTCCGATGACAAGATCATCAAGCTGGTCCGCGACAACTTCGACCTGCGTCCTTACGCAATCACCACCATGCTCGA CCTGCTGCACCCGATGTACCAGGCCACTGCAGCCTACGGCCACTTCGGTCGTATCCCGGTCGAAATGACCGTTGGCGATG ACACCTTCACCGCCTTCACCTGGGAAAAAACCGACCGCGCCGACGCCCTGCGCGCAGCTGCCGGTCTGTAA
Upstream 100 bases:
>100_bases TCTATGTAGGCTTACGTAATGGTTTCCAGATCCAGGTTCGCCATTTTCAGCGACCGGCTGGCGACACTCACCATCGGTAA AATGAAGGAAACCCGTAGAG
Downstream 100 bases:
>100_bases AAACCCAGAAAAAAGCCCCGAACGACCTGGTCGTTTCGGGGCTTTTTTTCGTCTGCGCGGCAGTCATTCCACGGTCACAC TTCAAGCCCGCCGCGACACC
Product: S-adenosylmethionine synthetase
Products: NA
Alternate protein names: AdoMet synthase; MAT; Methionine adenosyltransferase [H]
Number of amino acids: Translated: 396; Mature: 395
Protein sequence:
>396_residues MSEYSLFTSESVSEGHPDKIADQISDAVLDAIIAEDKYARVACETLVKTGVAIIAGEVSTSAWVDLEDIVRNVILDIGYN SSDVGFDGATCGVMNIIGKQSVDIAQGVDRSKPEDQGAGDQGLMFGYASNETDVLMPAPITFSHQLVQRQAEARKSGLLP WLRPDAKSQVTCRYENGKVVGVDAIVLSTQHNPDVSYKDLREGVMELIVKHVIPAHLLHKDTQFHINPTGNFIIGGPVGD CGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLAERCEIQVSYAIGVAQPTSISLNTFGTG KLSDDKIIKLVRDNFDLRPYAITTMLDLLHPMYQATAAYGHFGRIPVEMTVGDDTFTAFTWEKTDRADALRAAAGL
Sequences:
>Translated_396_residues MSEYSLFTSESVSEGHPDKIADQISDAVLDAIIAEDKYARVACETLVKTGVAIIAGEVSTSAWVDLEDIVRNVILDIGYN SSDVGFDGATCGVMNIIGKQSVDIAQGVDRSKPEDQGAGDQGLMFGYASNETDVLMPAPITFSHQLVQRQAEARKSGLLP WLRPDAKSQVTCRYENGKVVGVDAIVLSTQHNPDVSYKDLREGVMELIVKHVIPAHLLHKDTQFHINPTGNFIIGGPVGD CGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLAERCEIQVSYAIGVAQPTSISLNTFGTG KLSDDKIIKLVRDNFDLRPYAITTMLDLLHPMYQATAAYGHFGRIPVEMTVGDDTFTAFTWEKTDRADALRAAAGL >Mature_395_residues SEYSLFTSESVSEGHPDKIADQISDAVLDAIIAEDKYARVACETLVKTGVAIIAGEVSTSAWVDLEDIVRNVILDIGYNS SDVGFDGATCGVMNIIGKQSVDIAQGVDRSKPEDQGAGDQGLMFGYASNETDVLMPAPITFSHQLVQRQAEARKSGLLPW LRPDAKSQVTCRYENGKVVGVDAIVLSTQHNPDVSYKDLREGVMELIVKHVIPAHLLHKDTQFHINPTGNFIIGGPVGDC GLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLAERCEIQVSYAIGVAQPTSISLNTFGTGK LSDDKIIKLVRDNFDLRPYAITTMLDLLHPMYQATAAYGHFGRIPVEMTVGDDTFTAFTWEKTDRADALRAAAGL
Specific function: Catalyzes the formation of S-adenosylmethionine from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the e
COG id: COG0192
COG function: function code H; S-adenosylmethionine synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AdoMet synthase family [H]
Homologues:
Organism=Homo sapiens, GI4557737, Length=383, Percent_Identity=54.8302872062663, Blast_Score=400, Evalue=1e-111, Organism=Homo sapiens, GI5174529, Length=383, Percent_Identity=54.5691906005222, Blast_Score=393, Evalue=1e-109, Organism=Escherichia coli, GI1789311, Length=391, Percent_Identity=70.076726342711, Blast_Score=577, Evalue=1e-166, Organism=Caenorhabditis elegans, GI17538498, Length=383, Percent_Identity=55.6135770234987, Blast_Score=405, Evalue=1e-113, Organism=Caenorhabditis elegans, GI17538494, Length=389, Percent_Identity=55.012853470437, Blast_Score=404, Evalue=1e-113, Organism=Caenorhabditis elegans, GI25145633, Length=386, Percent_Identity=54.4041450777202, Blast_Score=400, Evalue=1e-112, Organism=Caenorhabditis elegans, GI17551082, Length=388, Percent_Identity=53.0927835051546, Blast_Score=394, Evalue=1e-110, Organism=Caenorhabditis elegans, GI32565905, Length=389, Percent_Identity=49.6143958868895, Blast_Score=343, Evalue=1e-94, Organism=Caenorhabditis elegans, GI32565911, Length=336, Percent_Identity=52.9761904761905, Blast_Score=333, Evalue=8e-92, Organism=Caenorhabditis elegans, GI25145635, Length=339, Percent_Identity=51.622418879056, Blast_Score=328, Evalue=2e-90, Organism=Caenorhabditis elegans, GI32565903, Length=311, Percent_Identity=52.411575562701, Blast_Score=301, Evalue=4e-82, Organism=Caenorhabditis elegans, GI32565909, Length=89, Percent_Identity=58.4269662921348, Blast_Score=107, Evalue=1e-23, Organism=Caenorhabditis elegans, GI32565907, Length=50, Percent_Identity=66, Blast_Score=68, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6320710, Length=390, Percent_Identity=52.5641025641026, Blast_Score=392, Evalue=1e-110, Organism=Saccharomyces cerevisiae, GI6323209, Length=383, Percent_Identity=52.4804177545692, Blast_Score=381, Evalue=1e-106, Organism=Drosophila melanogaster, GI45552159, Length=383, Percent_Identity=52.2193211488251, Blast_Score=369, Evalue=1e-102, Organism=Drosophila melanogaster, GI24580529, Length=383, Percent_Identity=52.2193211488251, Blast_Score=369, Evalue=1e-102, Organism=Drosophila melanogaster, GI24580537, Length=383, Percent_Identity=52.2193211488251, Blast_Score=369, Evalue=1e-102, Organism=Drosophila melanogaster, GI24580533, Length=383, Percent_Identity=52.2193211488251, Blast_Score=369, Evalue=1e-102, Organism=Drosophila melanogaster, GI24580535, Length=383, Percent_Identity=52.2193211488251, Blast_Score=369, Evalue=1e-102, Organism=Drosophila melanogaster, GI24580531, Length=383, Percent_Identity=52.2193211488251, Blast_Score=369, Evalue=1e-102, Organism=Drosophila melanogaster, GI24580527, Length=383, Percent_Identity=52.2193211488251, Blast_Score=364, Evalue=1e-101, Organism=Drosophila melanogaster, GI24580525, Length=383, Percent_Identity=52.2193211488251, Blast_Score=364, Evalue=1e-101, Organism=Drosophila melanogaster, GI24580541, Length=385, Percent_Identity=49.8701298701299, Blast_Score=343, Evalue=1e-94, Organism=Drosophila melanogaster, GI24580539, Length=117, Percent_Identity=52.1367521367521, Blast_Score=120, Evalue=2e-27,
Paralogues:
None
Copy number: 7,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022631 - InterPro: IPR022630 - InterPro: IPR022629 - InterPro: IPR022628 - InterPro: IPR002133 - InterPro: IPR022636 [H]
Pfam domain/function: PF02773 S-AdoMet_synt_C; PF02772 S-AdoMet_synt_M; PF00438 S-AdoMet_synt_N [H]
EC number: =2.5.1.6 [H]
Molecular weight: Translated: 42600; Mature: 42468
Theoretical pI: Translated: 5.12; Mature: 5.12
Prosite motif: PS00376 ADOMET_SYNTHETASE_1 ; PS00377 ADOMET_SYNTHETASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEYSLFTSESVSEGHPDKIADQISDAVLDAIIAEDKYARVACETLVKTGVAIIAGEVST CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCCC SAWVDLEDIVRNVILDIGYNSSDVGFDGATCGVMNIIGKQSVDIAQGVDRSKPEDQGAGD CCEECHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCC QGLMFGYASNETDVLMPAPITFSHQLVQRQAEARKSGLLPWLRPDAKSQVTCRYENGKVV CCEEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEE GVDAIVLSTQHNPDVSYKDLREGVMELIVKHVIPAHLLHKDTQFHINPTGNFIIGGPVGD EEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCC CGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLAERCEIQV CCCCCCEEEEECCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCEEEE SYAIGVAQPTSISLNTFGTGKLSDDKIIKLVRDNFDLRPYAITTMLDLLHPMYQATAAYG EEEEECCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHC HFGRIPVEMTVGDDTFTAFTWEKTDRADALRAAAGL CCCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHCC >Mature Secondary Structure SEYSLFTSESVSEGHPDKIADQISDAVLDAIIAEDKYARVACETLVKTGVAIIAGEVST CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCCC SAWVDLEDIVRNVILDIGYNSSDVGFDGATCGVMNIIGKQSVDIAQGVDRSKPEDQGAGD CCEECHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCC QGLMFGYASNETDVLMPAPITFSHQLVQRQAEARKSGLLPWLRPDAKSQVTCRYENGKVV CCEEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEE GVDAIVLSTQHNPDVSYKDLREGVMELIVKHVIPAHLLHKDTQFHINPTGNFIIGGPVGD EEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCC CGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLAERCEIQV CCCCCCEEEEECCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCEEEE SYAIGVAQPTSISLNTFGTGKLSDDKIIKLVRDNFDLRPYAITTMLDLLHPMYQATAAYG EEEEECCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHC HFGRIPVEMTVGDDTFTAFTWEKTDRADALRAAAGL CCCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA