| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is yheT [H]
Identifier: 66047979
GI number: 66047979
Start: 5631905
End: 5632939
Strand: Direct
Name: yheT [H]
Synonym: Psyr_4755
Alternate gene names: 66047979
Gene position: 5631905-5632939 (Clockwise)
Preceding gene: 66047978
Following gene: 66047982
Centisome position: 92.42
GC content: 62.22
Gene sequence:
>1035_bases GTGCCCACACGCCCTACCTTTGTGTCCCATGCCAATCCATTCGTCCCGGCCGTCGGCATGGGCAATCCGCATTTGCAGAC GCTTTGGGGGCCGCTGCTGCGCAAGCCGACGTTGCTGGCGCGCACGCGCGAGCGGTTGTGGTTGCAGGACGGGGACTTTC TGGACATGGACTGGCATGGTCCTGATCAGCCCGATAAACCCTTGGTGCTGGTACTGCACGGCCTGACTGGGTCGTCCAAC TCGCCCTATGTCGCCGGTCTGCAAAAGGCCATGGCAGCGCTGGGCTGGCCGAGTGTGGCGTTGAACTGGCGCGGTTGCTC GGGAGAACCCAACCTGCTGTCGCGCAGTTATCATTCAGGGGCGAGCGAGGATCTGGCCGAGGTGATCGCCCATTTGCGTT CGCTGCGGCCATTGGCTCCGATTTATGCGGTGGGGTATTCGCTGGGCGGCAATGTGTTGCTCAAGTACCTGGGTGAATCC GGCGCCAACAGTGATTTGCGGGGGGCCGTGGCGGTGTCCGTGCCGTTTCGTCTGGACGAATGCGCCAACCGTATCGGCCA AGGCTTCTCGCGGGTTTATCAGCGGCACTTCATGCGCGAAATGCTGGCTTATATCCGTGACAAGCAGCATCGGTTCCAGC ATGAAGGCATCAGCGAGGGGCTGGCCGAACTCGCCGCGCTGGGTTCACTGGAGAACATGCGCACCTTCTGGGACTTCGAT GGCCGGGTGACTGCGCCGCTGCACGGGTTTACCGATGCCACGGATTATTACCGCAGGGCGTCCAGCCGCTACTACCTGGG CCAGATTCAGACGCCGACGCTGATCATCCAGTCCAGCGACGACCCGTTCGTGTTCCCTCACAGCCTGCCCGAACCCAGCG AACTGTCGTCCTGCACCGAATTCGAACTGCACACCAAAGGCGGGCATGTCGGCTTCGTCGAAGGCTCGCTTCGCACTCCG CGTTACTACCTCGAACGTCGCATCCCGCTGTGGTTATGCGCCGCTCAGGAGCGCGAAGGCTCGCCCACGATTTGA
Upstream 100 bases:
>100_bases AGAGTGTCATGAATACATTCCGGCGCTTCCCCCTTACATCCCGGACAGCTTAGTGGCAACGTATAGCCAGTCACCCCTGA ATTGATCGTTGAGCAAGCAC
Downstream 100 bases:
>100_bases TAACGAATCAGGCGCCCGTGGCGATTTCACGCTCAGGATCGGTGATCCACTCGCTCCACGACCCCGCATACAGCGTAGCC AGCGGATAGCCAGCCAGACA
Product: alpha/beta fold family hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 344; Mature: 343
Protein sequence:
>344_residues MPTRPTFVSHANPFVPAVGMGNPHLQTLWGPLLRKPTLLARTRERLWLQDGDFLDMDWHGPDQPDKPLVLVLHGLTGSSN SPYVAGLQKAMAALGWPSVALNWRGCSGEPNLLSRSYHSGASEDLAEVIAHLRSLRPLAPIYAVGYSLGGNVLLKYLGES GANSDLRGAVAVSVPFRLDECANRIGQGFSRVYQRHFMREMLAYIRDKQHRFQHEGISEGLAELAALGSLENMRTFWDFD GRVTAPLHGFTDATDYYRRASSRYYLGQIQTPTLIIQSSDDPFVFPHSLPEPSELSSCTEFELHTKGGHVGFVEGSLRTP RYYLERRIPLWLCAAQEREGSPTI
Sequences:
>Translated_344_residues MPTRPTFVSHANPFVPAVGMGNPHLQTLWGPLLRKPTLLARTRERLWLQDGDFLDMDWHGPDQPDKPLVLVLHGLTGSSN SPYVAGLQKAMAALGWPSVALNWRGCSGEPNLLSRSYHSGASEDLAEVIAHLRSLRPLAPIYAVGYSLGGNVLLKYLGES GANSDLRGAVAVSVPFRLDECANRIGQGFSRVYQRHFMREMLAYIRDKQHRFQHEGISEGLAELAALGSLENMRTFWDFD GRVTAPLHGFTDATDYYRRASSRYYLGQIQTPTLIIQSSDDPFVFPHSLPEPSELSSCTEFELHTKGGHVGFVEGSLRTP RYYLERRIPLWLCAAQEREGSPTI >Mature_343_residues PTRPTFVSHANPFVPAVGMGNPHLQTLWGPLLRKPTLLARTRERLWLQDGDFLDMDWHGPDQPDKPLVLVLHGLTGSSNS PYVAGLQKAMAALGWPSVALNWRGCSGEPNLLSRSYHSGASEDLAEVIAHLRSLRPLAPIYAVGYSLGGNVLLKYLGESG ANSDLRGAVAVSVPFRLDECANRIGQGFSRVYQRHFMREMLAYIRDKQHRFQHEGISEGLAELAALGSLENMRTFWDFDG RVTAPLHGFTDATDYYRRASSRYYLGQIQTPTLIIQSSDDPFVFPHSLPEPSELSSCTEFELHTKGGHVGFVEGSLRTPR YYLERRIPLWLCAAQEREGSPTI
Specific function: Unknown
COG id: COG0429
COG function: function code R; Predicted hydrolase of the alpha/beta-hydrolase fold
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AB hydrolase superfamily. AB hydrolase 4 family [H]
Homologues:
Organism=Homo sapiens, GI23397663, Length=321, Percent_Identity=28.6604361370716, Blast_Score=137, Evalue=2e-32, Organism=Homo sapiens, GI194578891, Length=340, Percent_Identity=27.9411764705882, Blast_Score=135, Evalue=5e-32, Organism=Homo sapiens, GI23397659, Length=327, Percent_Identity=26.605504587156, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI23397661, Length=327, Percent_Identity=26.605504587156, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI269315865, Length=315, Percent_Identity=27.3015873015873, Blast_Score=73, Evalue=3e-13, Organism=Escherichia coli, GI1789752, Length=331, Percent_Identity=41.6918429003021, Blast_Score=241, Evalue=4e-65, Organism=Caenorhabditis elegans, GI17566110, Length=313, Percent_Identity=28.7539936102236, Blast_Score=124, Evalue=7e-29, Organism=Caenorhabditis elegans, GI71985405, Length=313, Percent_Identity=26.8370607028754, Blast_Score=114, Evalue=5e-26, Organism=Caenorhabditis elegans, GI71985413, Length=154, Percent_Identity=33.7662337662338, Blast_Score=79, Evalue=4e-15, Organism=Saccharomyces cerevisiae, GI6325162, Length=267, Percent_Identity=31.8352059925094, Blast_Score=119, Evalue=5e-28, Organism=Saccharomyces cerevisiae, GI6323866, Length=279, Percent_Identity=30.4659498207885, Blast_Score=112, Evalue=9e-26, Organism=Saccharomyces cerevisiae, GI6319655, Length=301, Percent_Identity=29.5681063122924, Blast_Score=102, Evalue=1e-22, Organism=Drosophila melanogaster, GI281398151, Length=316, Percent_Identity=30.379746835443, Blast_Score=116, Evalue=3e-26, Organism=Drosophila melanogaster, GI24652003, Length=316, Percent_Identity=30.379746835443, Blast_Score=115, Evalue=3e-26, Organism=Drosophila melanogaster, GI24581365, Length=352, Percent_Identity=25.8522727272727, Blast_Score=97, Evalue=2e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012020 - InterPro: IPR000073 - InterPro: IPR000952 [H]
Pfam domain/function: PF00561 Abhydrolase_1 [H]
EC number: NA
Molecular weight: Translated: 38345; Mature: 38214
Theoretical pI: Translated: 7.19; Mature: 7.19
Prosite motif: PS01133 UPF0017
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTRPTFVSHANPFVPAVGMGNPHLQTLWGPLLRKPTLLARTRERLWLQDGDFLDMDWHG CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHEECCCCEEECCCCC PDQPDKPLVLVLHGLTGSSNSPYVAGLQKAMAALGWPSVALNWRGCSGEPNLLSRSYHSG CCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCC ASEDLAEVIAHLRSLRPLAPIYAVGYSLGGNVLLKYLGESGANSDLRGAVAVSVPFRLDE CHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCEEEEEECCCHHHH CANRIGQGFSRVYQRHFMREMLAYIRDKQHRFQHEGISEGLAELAALGSLENMRTFWDFD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHCCCC GRVTAPLHGFTDATDYYRRASSRYYLGQIQTPTLIIQSSDDPFVFPHSLPEPSELSSCTE CEEECCCCCCCCHHHHHHHHCCCEEEEEECCCEEEEECCCCCEECCCCCCCCHHHCCCCE FELHTKGGHVGFVEGSLRTPRYYLERRIPLWLCAAQEREGSPTI EEEECCCCEEEEECCCCCCCHHHHHCCCCEEEEECCCCCCCCCC >Mature Secondary Structure PTRPTFVSHANPFVPAVGMGNPHLQTLWGPLLRKPTLLARTRERLWLQDGDFLDMDWHG CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHEECCCCEEECCCCC PDQPDKPLVLVLHGLTGSSNSPYVAGLQKAMAALGWPSVALNWRGCSGEPNLLSRSYHSG CCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCC ASEDLAEVIAHLRSLRPLAPIYAVGYSLGGNVLLKYLGESGANSDLRGAVAVSVPFRLDE CHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCEEEEEECCCHHHH CANRIGQGFSRVYQRHFMREMLAYIRDKQHRFQHEGISEGLAELAALGSLENMRTFWDFD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHCCCC GRVTAPLHGFTDATDYYRRASSRYYLGQIQTPTLIIQSSDDPFVFPHSLPEPSELSSCTE CEEECCCCCCCCHHHHHHHHCCCEEEEEECCCEEEEECCCCCEECCCCCCCCHHHCCCCE FELHTKGGHVGFVEGSLRTPRYYLERRIPLWLCAAQEREGSPTI EEEECCCCEEEEECCCCCCCHHHHHCCCCEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]