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The map label for this gene is ybaO [C]

Identifier: 66047890

GI number: 66047890

Start: 5530400

End: 5530861

Strand: Direct

Name: ybaO [C]

Synonym: Psyr_4666

Alternate gene names: 66047890

Gene position: 5530400-5530861 (Clockwise)

Preceding gene: 66047889

Following gene: 66047891

Centisome position: 90.76

GC content: 63.64

Gene sequence:

>462_bases
GTGCCCGATACCCGCCCGCCTGTGCTGGATGAAATCGATCGCCAGCTGATTGCCGCGCTGCAAATCAACGCGCGCGAAAG
CGTCGCCATGCTCGCCCGGCAACTGGGCATCGCCCGCACCACCGTCACCTCGCGGCTGGCACGCCTGGAAAGCAGCAAAG
TGATTACCGGTTACGGCGTGCGCCTTGGCCAGCGCGTGGTCAGTGGCGGGTTGCAGGCGTATGTCGGCATCACCGTGCAA
CCCCGCTCGGGCAAGGAAGTGGTGCGGCGCCTCAGTGCCATGGCGCAGGTTCAGCAACTCTGTGCCGTGAGCGGCGAGTT
CGATTATGTCGCTTGGTTGCGCACGGATTCTCCCGAGCAACTGGACCAGTTACTCGACCTGATCGGCAGCGTGGAGGGTG
TCGAGAAGACCACCACATCGATCATCCTCAGCAGCAAGATCGACCGCGGCCAGCCGGTGTAA

Upstream 100 bases:

>100_bases
GGCTACCACTTGATGACCCAGCAGTTGGCGCTCAACCTCGACGGCCTGCAGGCGCGTCTGGCCAAGACCGCCAAACGCTG
GAAGTTTTAAGGAACCGCCC

Downstream 100 bases:

>100_bases
CCGAACGCTTCTATCAAGCAGCCATACAAACCGACCAGCAGATTCGTCACTTAGCCCAAACAAACAGCATATCGACGACA
CTTTGCGTCTTATTAACGTG

Product: helix-turn-helix, Fis-type

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 152

Protein sequence:

>153_residues
MPDTRPPVLDEIDRQLIAALQINARESVAMLARQLGIARTTVTSRLARLESSKVITGYGVRLGQRVVSGGLQAYVGITVQ
PRSGKEVVRRLSAMAQVQQLCAVSGEFDYVAWLRTDSPEQLDQLLDLIGSVEGVEKTTTSIILSSKIDRGQPV

Sequences:

>Translated_153_residues
MPDTRPPVLDEIDRQLIAALQINARESVAMLARQLGIARTTVTSRLARLESSKVITGYGVRLGQRVVSGGLQAYVGITVQ
PRSGKEVVRRLSAMAQVQQLCAVSGEFDYVAWLRTDSPEQLDQLLDLIGSVEGVEKTTTSIILSSKIDRGQPV
>Mature_152_residues
PDTRPPVLDEIDRQLIAALQINARESVAMLARQLGIARTTVTSRLARLESSKVITGYGVRLGQRVVSGGLQAYVGITVQP
RSGKEVVRRLSAMAQVQQLCAVSGEFDYVAWLRTDSPEQLDQLLDLIGSVEGVEKTTTSIILSSKIDRGQPV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 16646; Mature: 16515

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDTRPPVLDEIDRQLIAALQINARESVAMLARQLGIARTTVTSRLARLESSKVITGYGV
CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHH
RLGQRVVSGGLQAYVGITVQPRSGKEVVRRLSAMAQVQQLCAVSGEFDYVAWLRTDSPEQ
HHHHHHHHCCHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHH
LDQLLDLIGSVEGVEKTTTSIILSSKIDRGQPV
HHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
PDTRPPVLDEIDRQLIAALQINARESVAMLARQLGIARTTVTSRLARLESSKVITGYGV
CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHH
RLGQRVVSGGLQAYVGITVQPRSGKEVVRRLSAMAQVQQLCAVSGEFDYVAWLRTDSPEQ
HHHHHHHHCCHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHH
LDQLLDLIGSVEGVEKTTTSIILSSKIDRGQPV
HHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA