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The map label for this gene is ycgB [H]

Identifier: 66047860

GI number: 66047860

Start: 5493757

End: 5495319

Strand: Direct

Name: ycgB [H]

Synonym: Psyr_4633

Alternate gene names: 66047860

Gene position: 5493757-5495319 (Clockwise)

Preceding gene: 66047859

Following gene: 66047861

Centisome position: 90.15

GC content: 57.65

Gene sequence:

>1563_bases
ATGACCGCCAGAGAGCAGAAGCGCCAACCCCTCTCCACGGGGTCAGAGTGGACATTCGAACTGATCCGCGCCTACGACCG
CGAAATCGGCAGGATTGCCGAGCGGTATGCGCTGGATACCTACCCCAACCAGATCGAAGTGATTACGGCCGAGCAGATGA
TGGATGCCTATGCCTCGGTGGGCATGCCCTTGGGCTATCACCACTGGTCCTACGGCAAACACTTCCTCAGCACGGAAAAA
TCCTATTCGCGAGGCCAGATGGGCCTGGCCTACGAGATCGTCATCAACTCCGACCCGTGCATCGCCTACCTGATGGAAGA
GAACACCATCTGCATGCAGGCGCTGGTCGTGGCTCATGCGTGCTATGGCCATAACAGCTTCTTCAAGGGCAACTACCTGT
TTCGCACCTGGACCGACGCCAGCTCGATCATCGATTACCTGGTGTTTGCCAAGCAGTACATCATGCAATGTGAGGAACGG
CATGGCATTGATGCCGTGGAGGACTTGCTCGACTCCTGCCATGCACTGATGAACTACGGGGTGGATCGCTACAAGCGCCC
CTACCCGATTTCCGCCGAAGAGGAGCGGCGTCGGCAGAAGGACCGGGAGGAGCACCTTCAGCGGCAAATCAACGACCTGT
GGCGCACCATCCCGAAAAGTGCCGACAAGAGCAGCAAGGAAGACAACGCGCGCTTTCCGGCAGAGCCGCAGGAAAACATT
CTCTACTTCATCGAGAAACACGCCCCGCTGCTGGAGCCATGGCAGCGTGAAGTGGTGCGCATCGTGCGCAAGATCGCGCA
GTATTTCTATCCACAGCGCCAGACCCAGGTGATGAACGAAGGCTGGGCGACGTTCTGGCATTACACGCTGATGAATGATC
TGTACGACGAAGGCCTGGTCACCGACGGCTTCATGATGGAGTTCCTGCAGTCGCACACCAGCGTGATTTTCCAGCCCGGT
TTCGACAGTCCGTATTACAGCGGTATCAATCCCTACGCGCTGGGCTTTGCCATGTATCAGGACATCCGCCGGATGTGCGA
AAACCCTACTGACGAAGACCGCCAGTGGTTTCCGGAAATTGCCGGCAGCGACTGGCTCACGGCGATCAAATTCGCAATGA
CCAGCTTCAAGGACGAGAGCTTCATCCTCCAGTACCTGTCGCCCAAGGTGATTCGCGACCTCAAGCTGTTCAGCATCATG
GACGACGACCAGCAGGAGGACCTGCTGGTGCCCGCCATTCATGATGAAAACGGCTATCGGACCATTCGCGAAATACTCGC
TGCGCAGTACAACCTGGGCAATCGGGAGCCCAATGTGCAGATCTACAGCATCGACCGCCGAGGCGATCGCTCGCTGACCC
TGCGCCATCAACAGCACAATCGCAAACCACTCGGTGACTCGACAGACGAGGTGCTCAAGCACCTGCACCGGCTCTGGGGC
TTTGACATCCACCTGGAAACCCTGCAGGGCGATCAGGTGGTCAAGACTCATCACGTCCCCCCGAAAGGCGAGCATGCCGA
CAGTGAATATCCCCGGCTTGATATGGCGGTCGTTCACCTTTAA

Upstream 100 bases:

>100_bases
TCGGTGAAGATTTTGCCGACACGTTTGCCCAGCAACAGCTGGTCTCTGCCGGTGATATCTACCCGGTATTCCGCGAACTC
TTTCAGCGAAGGTTAGTGTC

Downstream 100 bases:

>100_bases
GCACTAGGGGAATAGGGTTTTAAACGCTTGTTCATGCAGCTTTAGCCTCCGCAAGTACGACACAAGGTTTATCCTGTCGC
GCTTACGGAGGCTTTTTATG

Product: SpoVR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 520; Mature: 519

Protein sequence:

>520_residues
MTAREQKRQPLSTGSEWTFELIRAYDREIGRIAERYALDTYPNQIEVITAEQMMDAYASVGMPLGYHHWSYGKHFLSTEK
SYSRGQMGLAYEIVINSDPCIAYLMEENTICMQALVVAHACYGHNSFFKGNYLFRTWTDASSIIDYLVFAKQYIMQCEER
HGIDAVEDLLDSCHALMNYGVDRYKRPYPISAEEERRRQKDREEHLQRQINDLWRTIPKSADKSSKEDNARFPAEPQENI
LYFIEKHAPLLEPWQREVVRIVRKIAQYFYPQRQTQVMNEGWATFWHYTLMNDLYDEGLVTDGFMMEFLQSHTSVIFQPG
FDSPYYSGINPYALGFAMYQDIRRMCENPTDEDRQWFPEIAGSDWLTAIKFAMTSFKDESFILQYLSPKVIRDLKLFSIM
DDDQQEDLLVPAIHDENGYRTIREILAAQYNLGNREPNVQIYSIDRRGDRSLTLRHQQHNRKPLGDSTDEVLKHLHRLWG
FDIHLETLQGDQVVKTHHVPPKGEHADSEYPRLDMAVVHL

Sequences:

>Translated_520_residues
MTAREQKRQPLSTGSEWTFELIRAYDREIGRIAERYALDTYPNQIEVITAEQMMDAYASVGMPLGYHHWSYGKHFLSTEK
SYSRGQMGLAYEIVINSDPCIAYLMEENTICMQALVVAHACYGHNSFFKGNYLFRTWTDASSIIDYLVFAKQYIMQCEER
HGIDAVEDLLDSCHALMNYGVDRYKRPYPISAEEERRRQKDREEHLQRQINDLWRTIPKSADKSSKEDNARFPAEPQENI
LYFIEKHAPLLEPWQREVVRIVRKIAQYFYPQRQTQVMNEGWATFWHYTLMNDLYDEGLVTDGFMMEFLQSHTSVIFQPG
FDSPYYSGINPYALGFAMYQDIRRMCENPTDEDRQWFPEIAGSDWLTAIKFAMTSFKDESFILQYLSPKVIRDLKLFSIM
DDDQQEDLLVPAIHDENGYRTIREILAAQYNLGNREPNVQIYSIDRRGDRSLTLRHQQHNRKPLGDSTDEVLKHLHRLWG
FDIHLETLQGDQVVKTHHVPPKGEHADSEYPRLDMAVVHL
>Mature_519_residues
TAREQKRQPLSTGSEWTFELIRAYDREIGRIAERYALDTYPNQIEVITAEQMMDAYASVGMPLGYHHWSYGKHFLSTEKS
YSRGQMGLAYEIVINSDPCIAYLMEENTICMQALVVAHACYGHNSFFKGNYLFRTWTDASSIIDYLVFAKQYIMQCEERH
GIDAVEDLLDSCHALMNYGVDRYKRPYPISAEEERRRQKDREEHLQRQINDLWRTIPKSADKSSKEDNARFPAEPQENIL
YFIEKHAPLLEPWQREVVRIVRKIAQYFYPQRQTQVMNEGWATFWHYTLMNDLYDEGLVTDGFMMEFLQSHTSVIFQPGF
DSPYYSGINPYALGFAMYQDIRRMCENPTDEDRQWFPEIAGSDWLTAIKFAMTSFKDESFILQYLSPKVIRDLKLFSIMD
DDQQEDLLVPAIHDENGYRTIREILAAQYNLGNREPNVQIYSIDRRGDRSLTLRHQQHNRKPLGDSTDEVLKHLHRLWGF
DIHLETLQGDQVVKTHHVPPKGEHADSEYPRLDMAVVHL

Specific function: Unknown

COG id: COG2719

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis spoVR [H]

Homologues:

Organism=Escherichia coli, GI1787437, Length=493, Percent_Identity=66.9371196754564, Blast_Score=728, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007390 [H]

Pfam domain/function: PF04293 SpoVR [H]

EC number: NA

Molecular weight: Translated: 61068; Mature: 60936

Theoretical pI: Translated: 5.56; Mature: 5.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAREQKRQPLSTGSEWTFELIRAYDREIGRIAERYALDTYPNQIEVITAEQMMDAYASV
CCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHC
GMPLGYHHWSYGKHFLSTEKSYSRGQMGLAYEIVINSDPCIAYLMEENTICMQALVVAHA
CCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCEEEEECCCHHHHHHHHHHHH
CYGHNSFFKGNYLFRTWTDASSIIDYLVFAKQYIMQCEERHGIDAVEDLLDSCHALMNYG
HHCCCCEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
VDRYKRPYPISAEEERRRQKDREEHLQRQINDLWRTIPKSADKSSKEDNARFPAEPQENI
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
LYFIEKHAPLLEPWQREVVRIVRKIAQYFYPQRQTQVMNEGWATFWHYTLMNDLYDEGLV
EEEHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCC
TDGFMMEFLQSHTSVIFQPGFDSPYYSGINPYALGFAMYQDIRRMCENPTDEDRQWFPEI
CHHHHHHHHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
AGSDWLTAIKFAMTSFKDESFILQYLSPKVIRDLKLFSIMDDDQQEDLLVPAIHDENGYR
CCCHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHH
TIREILAAQYNLGNREPNVQIYSIDRRGDRSLTLRHQQHNRKPLGDSTDEVLKHLHRLWG
HHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEEHHHCCCCCCCCCHHHHHHHHHHHHC
FDIHLETLQGDQVVKTHHVPPKGEHADSEYPRLDMAVVHL
CCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEC
>Mature Secondary Structure 
TAREQKRQPLSTGSEWTFELIRAYDREIGRIAERYALDTYPNQIEVITAEQMMDAYASV
CCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHC
GMPLGYHHWSYGKHFLSTEKSYSRGQMGLAYEIVINSDPCIAYLMEENTICMQALVVAHA
CCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCEEEEECCCHHHHHHHHHHHH
CYGHNSFFKGNYLFRTWTDASSIIDYLVFAKQYIMQCEERHGIDAVEDLLDSCHALMNYG
HHCCCCEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
VDRYKRPYPISAEEERRRQKDREEHLQRQINDLWRTIPKSADKSSKEDNARFPAEPQENI
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
LYFIEKHAPLLEPWQREVVRIVRKIAQYFYPQRQTQVMNEGWATFWHYTLMNDLYDEGLV
EEEHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCC
TDGFMMEFLQSHTSVIFQPGFDSPYYSGINPYALGFAMYQDIRRMCENPTDEDRQWFPEI
CHHHHHHHHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
AGSDWLTAIKFAMTSFKDESFILQYLSPKVIRDLKLFSIMDDDQQEDLLVPAIHDENGYR
CCCHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHH
TIREILAAQYNLGNREPNVQIYSIDRRGDRSLTLRHQQHNRKPLGDSTDEVLKHLHRLWG
HHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEEHHHCCCCCCCCCHHHHHHHHHHHHC
FDIHLETLQGDQVVKTHHVPPKGEHADSEYPRLDMAVVHL
CCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 7906689 [H]