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The map label for this gene is ugpB [H]

Identifier: 66047729

GI number: 66047729

Start: 5366138

End: 5367457

Strand: Direct

Name: ugpB [H]

Synonym: Psyr_4502

Alternate gene names: 66047729

Gene position: 5366138-5367457 (Clockwise)

Preceding gene: 66047727

Following gene: 66047730

Centisome position: 88.06

GC content: 63.71

Gene sequence:

>1320_bases
ATGCCTTCCATCCGTAAGATGTTTTCCGTGCTGGCCCTGCTGTCGCTCGCTGCAAACGCCTTCGCCGCGGCACCGGCCGA
GTTCTGGTACAGCCACAGTGGCGCGGCCGGGAGTGCCATCGCGGATCTGTGCAGAAGCTTCAATGCGCCACGCGAGGAAG
GTGATCGCCTGCACTGTGTCCGCCAGGGCAGTTATGAGCAGACGCTGCAGAAAACCGTAGCGGCTTACCGGGCGGGCATA
GGCCCGGCACTGGTGGAGATTTACGACGTTGCCACGCCTGACATGCTGCTGGGCGGTGCCACCCGACCTGTCGAGGCGAT
CATGGCCGATCATCACAGGGCCTATCCCGACGATACCTTTCTGCCAGCCTTGCGGCGCTATTACGCCGACGACCACGGCA
CGCTCGCGGCGCAGCCTTTTGCGGCGTCCACAGCCGTGCTTTATACACACCGGAAGGCGCTGGCCGCTGCCGGGATCAGC
GAGCCACCCGCCACCTGGGAAGCCTTTGCGGATGCCTTGCGGGCCCTGAAGAAAAACGGTCAGCAATGCCCGCTCGTCAG
CGCCTTTGCCCCCTGGATCTGGCTTGAGCAAACCAGCGCAGCGCAAGGCACCGACGTTGCGATTCGCTCCGCAGGCGGTG
ACCGCTATCAGTTCGACGAAGGCCCCCATCTGCGCCTCATGAAAGACCTCGCGCAATGGACCTCCCAAGGTCTGGTGGTC
CATGAGGATGCAACCCGCAGCGGGCAGCAGGCGCTGGCGTTCGCCACCGACGATTGCGCCATGCTGCTCGACTCCACCGG
GGCGTGGAATGTTGTACACAGCACGCTCAAATCCGATATCCAGGTCACGGCACTGCCGATTTACGCGGCCACCCAGCGAC
GTGCCAACGTTCCCGGAGGTTCCTCGCTGTGGGTCATGCGCGGGCATTCCGTCAGGGATTACCGGCTGGTCTCGGAATTT
CTGGCGTTCGTGCTGCAACCGGACAACCAGTTGATATTCAGCGCCCGAACGGGCTACCTGCCCGTTACCCAGGCCGCCGC
TGCACGTTTGCAATCCGCAGCCAGCGAGCCATCGGCAATCACGGTCGGACTGACAGCGCTGGACGATATCGACGGTCAGC
CTTCCGCGCCTTTGCGCTGCGGCTTTATCACGCTGATGCGCCTCATCTGGTCGCAGGAAATGGAGAACGCGCTCGCGGGT
CGCCAGAGCATCGATCTGGCCCTGCGCCAGACGACGCTACGGGCCAACGAGCTGCTGGGTCTGTTTCAACAGATGCACCG
CGCCCAGGCCAGCAACGAGTCGAGCGAGGCCACGCCATGA

Upstream 100 bases:

>100_bases
ACTGCACGCTTCAATCATGAAAATTTAATAAAAGTCGCGCAGGTCACAAATACTACACACAACCTGTATTAAATGGCATT
GAGTTCTTGTGAGTGTCCTC

Downstream 100 bases:

>100_bases
AACCCCGTGCTCATTTCCCACAGCCACGTCTGGCGCTGCTGTTTGCCCTGCCGCAACTGCTGGCGCTCGGCCTGTTCTTT
TATTGGCCTGCGGTCCAGGC

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 438

Protein sequence:

>439_residues
MPSIRKMFSVLALLSLAANAFAAAPAEFWYSHSGAAGSAIADLCRSFNAPREEGDRLHCVRQGSYEQTLQKTVAAYRAGI
GPALVEIYDVATPDMLLGGATRPVEAIMADHHRAYPDDTFLPALRRYYADDHGTLAAQPFAASTAVLYTHRKALAAAGIS
EPPATWEAFADALRALKKNGQQCPLVSAFAPWIWLEQTSAAQGTDVAIRSAGGDRYQFDEGPHLRLMKDLAQWTSQGLVV
HEDATRSGQQALAFATDDCAMLLDSTGAWNVVHSTLKSDIQVTALPIYAATQRRANVPGGSSLWVMRGHSVRDYRLVSEF
LAFVLQPDNQLIFSARTGYLPVTQAAAARLQSAASEPSAITVGLTALDDIDGQPSAPLRCGFITLMRLIWSQEMENALAG
RQSIDLALRQTTLRANELLGLFQQMHRAQASNESSEATP

Sequences:

>Translated_439_residues
MPSIRKMFSVLALLSLAANAFAAAPAEFWYSHSGAAGSAIADLCRSFNAPREEGDRLHCVRQGSYEQTLQKTVAAYRAGI
GPALVEIYDVATPDMLLGGATRPVEAIMADHHRAYPDDTFLPALRRYYADDHGTLAAQPFAASTAVLYTHRKALAAAGIS
EPPATWEAFADALRALKKNGQQCPLVSAFAPWIWLEQTSAAQGTDVAIRSAGGDRYQFDEGPHLRLMKDLAQWTSQGLVV
HEDATRSGQQALAFATDDCAMLLDSTGAWNVVHSTLKSDIQVTALPIYAATQRRANVPGGSSLWVMRGHSVRDYRLVSEF
LAFVLQPDNQLIFSARTGYLPVTQAAAARLQSAASEPSAITVGLTALDDIDGQPSAPLRCGFITLMRLIWSQEMENALAG
RQSIDLALRQTTLRANELLGLFQQMHRAQASNESSEATP
>Mature_438_residues
PSIRKMFSVLALLSLAANAFAAAPAEFWYSHSGAAGSAIADLCRSFNAPREEGDRLHCVRQGSYEQTLQKTVAAYRAGIG
PALVEIYDVATPDMLLGGATRPVEAIMADHHRAYPDDTFLPALRRYYADDHGTLAAQPFAASTAVLYTHRKALAAAGISE
PPATWEAFADALRALKKNGQQCPLVSAFAPWIWLEQTSAAQGTDVAIRSAGGDRYQFDEGPHLRLMKDLAQWTSQGLVVH
EDATRSGQQALAFATDDCAMLLDSTGAWNVVHSTLKSDIQVTALPIYAATQRRANVPGGSSLWVMRGHSVRDYRLVSEFL
AFVLQPDNQLIFSARTGYLPVTQAAAARLQSAASEPSAITVGLTALDDIDGQPSAPLRCGFITLMRLIWSQEMENALAGR
QSIDLALRQTTLRANELLGLFQQMHRAQASNESSEATP

Specific function: sn-glycerol-3-phosphate and glycerophosphoryl diester- binding protein interacts with the binding protein-dependent transport system ugpACE [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=429, Percent_Identity=31.2354312354312, Blast_Score=195, Evalue=4e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 47488; Mature: 47357

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSIRKMFSVLALLSLAANAFAAAPAEFWYSHSGAAGSAIADLCRSFNAPREEGDRLHCV
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCEEEEE
RQGSYEQTLQKTVAAYRAGIGPALVEIYDVATPDMLLGGATRPVEAIMADHHRAYPDDTF
ECCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHCCCCCCCHH
LPALRRYYADDHGTLAAQPFAASTAVLYTHRKALAAAGISEPPATWEAFADALRALKKNG
HHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
QQCPLVSAFAPWIWLEQTSAAQGTDVAIRSAGGDRYQFDEGPHLRLMKDLAQWTSQGLVV
CCCCCHHHHCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCEEE
HEDATRSGQQALAFATDDCAMLLDSTGAWNVVHSTLKSDIQVTALPIYAATQRRANVPGG
ECCCCCCCCCEEEEECCCHHHHHCCCCCHHHHHHHHHCCCEEEEEEEEHHHHHHCCCCCC
SSLWVMRGHSVRDYRLVSEFLAFVLQPDNQLIFSARTGYLPVTQAAAARLQSAASEPSAI
CEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEE
TVGLTALDDIDGQPSAPLRCGFITLMRLIWSQEMENALAGRQSIDLALRQTTLRANELLG
EEEEEEHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
LFQQMHRAQASNESSEATP
HHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
PSIRKMFSVLALLSLAANAFAAAPAEFWYSHSGAAGSAIADLCRSFNAPREEGDRLHCV
CHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCEEEEE
RQGSYEQTLQKTVAAYRAGIGPALVEIYDVATPDMLLGGATRPVEAIMADHHRAYPDDTF
ECCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHCCCCCCCHH
LPALRRYYADDHGTLAAQPFAASTAVLYTHRKALAAAGISEPPATWEAFADALRALKKNG
HHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
QQCPLVSAFAPWIWLEQTSAAQGTDVAIRSAGGDRYQFDEGPHLRLMKDLAQWTSQGLVV
CCCCCHHHHCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCEEE
HEDATRSGQQALAFATDDCAMLLDSTGAWNVVHSTLKSDIQVTALPIYAATQRRANVPGG
ECCCCCCCCCEEEEECCCHHHHHCCCCCHHHHHHHHHCCCEEEEEEEEHHHHHHCCCCCC
SSLWVMRGHSVRDYRLVSEFLAFVLQPDNQLIFSARTGYLPVTQAAAARLQSAASEPSAI
CEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEE
TVGLTALDDIDGQPSAPLRCGFITLMRLIWSQEMENALAGRQSIDLALRQTTLRANELLG
EEEEEEHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
LFQQMHRAQASNESSEATP
HHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA