Click here to switch to the map view.

The map label for this gene is cobH [H]

Identifier: 66047643

GI number: 66047643

Start: 5279998

End: 5280624

Strand: Reverse

Name: cobH [H]

Synonym: Psyr_4416

Alternate gene names: 66047643

Gene position: 5280624-5279998 (Counterclockwise)

Preceding gene: 66047644

Following gene: 66047642

Centisome position: 86.66

GC content: 63.32

Gene sequence:

>627_bases
ATGATTGATTACATCCGCGATGGTCAGGAGATATATCGCAACTCTTTCACGATCATTCGCGCCGAAGCGCGTCTTGACAC
GATCCCTGCCGACCTGGAAAAACTCGCCGTGCGCGTGATCCATGCCTGCGGGATGGTCGAAGTCATCGAAGACCTGCGCT
TCTCGCCGGGTGCCGGTACCGCCGGGCGCAACGCTCTGGCCGCCGGAGCGCCGATCCTGTGTGATGCGCGCATGGTTTCC
GAAGGCATCACCCGCACCCGGCTGCCCGCCAATAACCCGATCATCTGCACCTTGCATGATGAAGGCGTGCGGGAAATGGC
CCTGGAGCTGGGCAATACGCGTTCTGCGGTGGCGCTTGAGCTGTGGCGTCCGCACCTGGAAGGCAGTGTAGTGGTCATCG
GCAACGCGCCGACCGCGCTGTTCTATCTGTTGGAAATGCTCGATGCCGGTGCGCCGAAGCCTGCGCTGATTCTCGGCTTT
CCGGTCGGCTTTGTCGGGGCCGCCGAGTCTAAGGCGATGCTCGCCGCCGATAGCCGCGGCGTGCCGTTCGTGATCATGCA
GGGCCGTCGTGGCGGCAGCGCCATGGCCGTGGCCGCTGTCAACGCACTGGCCACGGAGATCGAATGA

Upstream 100 bases:

>100_bases
CGCGATGCAGCGCATGCCGGTTTCGGCGTGCTGCGCGCGCGCAACCTTACTATTGAAGCAGTCGGCGCGCAGTTGAACGC
CGGCTCACGGAGCAACATGC

Downstream 100 bases:

>100_bases
TGCAGGCACGCGGTCGATTGATTGGCCTGGGCGTCGGTCCCGGCGACCCGGAGCTGATCACCGTCAAGGCCCTGCGCCTG
CTGCGCGAGTCGCCGGTGGT

Product: precorrin-8X methylmutase

Products: NA

Alternate protein names: HBA synthase; Precorrin isomerase [H]

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MIDYIRDGQEIYRNSFTIIRAEARLDTIPADLEKLAVRVIHACGMVEVIEDLRFSPGAGTAGRNALAAGAPILCDARMVS
EGITRTRLPANNPIICTLHDEGVREMALELGNTRSAVALELWRPHLEGSVVVIGNAPTALFYLLEMLDAGAPKPALILGF
PVGFVGAAESKAMLAADSRGVPFVIMQGRRGGSAMAVAAVNALATEIE

Sequences:

>Translated_208_residues
MIDYIRDGQEIYRNSFTIIRAEARLDTIPADLEKLAVRVIHACGMVEVIEDLRFSPGAGTAGRNALAAGAPILCDARMVS
EGITRTRLPANNPIICTLHDEGVREMALELGNTRSAVALELWRPHLEGSVVVIGNAPTALFYLLEMLDAGAPKPALILGF
PVGFVGAAESKAMLAADSRGVPFVIMQGRRGGSAMAVAAVNALATEIE
>Mature_208_residues
MIDYIRDGQEIYRNSFTIIRAEARLDTIPADLEKLAVRVIHACGMVEVIEDLRFSPGAGTAGRNALAAGAPILCDARMVS
EGITRTRLPANNPIICTLHDEGVREMALELGNTRSAVALELWRPHLEGSVVVIGNAPTALFYLLEMLDAGAPKPALILGF
PVGFVGAAESKAMLAADSRGVPFVIMQGRRGGSAMAVAAVNALATEIE

Specific function: Catalyzes the conversion of precorrin-8X to hydrogenobyrinic acid; a methyl migration reaction during the transformation of precorrin-3 to form cobyrinic acid [H]

COG id: COG2082

COG function: function code H; Precorrin isomerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CobH family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003722 [H]

Pfam domain/function: PF02570 CbiC [H]

EC number: =5.4.1.2 [H]

Molecular weight: Translated: 22065; Mature: 22065

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDYIRDGQEIYRNSFTIIRAEARLDTIPADLEKLAVRVIHACGMVEVIEDLRFSPGAGT
CCCCCCCCHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCC
AGRNALAAGAPILCDARMVSEGITRTRLPANNPIICTLHDEGVREMALELGNTRSAVALE
CCCCCHHCCCCEEEHHHHHHCCCCEEECCCCCCEEEEECCCCHHHHHHHHCCCCCCEEHE
LWRPHLEGSVVVIGNAPTALFYLLEMLDAGAPKPALILGFPVGFVGAAESKAMLAADSRG
EECCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCEEEEECCCC
VPFVIMQGRRGGSAMAVAAVNALATEIE
CCEEEEECCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIDYIRDGQEIYRNSFTIIRAEARLDTIPADLEKLAVRVIHACGMVEVIEDLRFSPGAGT
CCCCCCCCHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCC
AGRNALAAGAPILCDARMVSEGITRTRLPANNPIICTLHDEGVREMALELGNTRSAVALE
CCCCCHHCCCCEEEHHHHHHCCCCEEECCCCCCEEEEECCCCHHHHHHHHCCCCCCEEHE
LWRPHLEGSVVVIGNAPTALFYLLEMLDAGAPKPALILGFPVGFVGAAESKAMLAADSRG
EECCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCEEEEECCCC
VPFVIMQGRRGGSAMAVAAVNALATEIE
CCEEEEECCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]