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The map label for this gene is hofQ [C]

Identifier: 66047618

GI number: 66047618

Start: 5252728

End: 5253978

Strand: Direct

Name: hofQ [C]

Synonym: Psyr_4391

Alternate gene names: 66047618

Gene position: 5252728-5253978 (Clockwise)

Preceding gene: 66047617

Following gene: 66047619

Centisome position: 86.2

GC content: 63.23

Gene sequence:

>1251_bases
ATGAGCTGTTGTTCCGTGCCAGTTATAAAACCCCGTTTGCTGGCGTTAGTCATCGCAACATTGTGCGCGCCAGGCGCGTG
GGCCGCTTCGGGCAGTTGTGCCGGCCTTGCCGCGATGCCGGCGGCCGTGGAAATTGACCAGGGCATTCAACAGGAGGTGC
GCTCTGCGGTGCCCATCACCCGCATCGCCGTGGGTGATCCGAAAATCGCCGATGTGCATGTCAACGGCACCGACGGTTTT
CTGTTGACCGGCGTCGCACAGGGGACGACCAGCCTGATGGTCTGGACCGCCTGTGCAAGCGCGCCGCGCCAGAGCATGGT
CTTCGTGCGTGGCCGGGCGACGACCGCCATGGTCGAGAGTGTCACCGCGCCGTCTGCCGATGCGCAGTTACCCAGCCAGG
TGCAGACCGACATCCGTTTTATCGAAGTCAGCCGCACCAAGCTCAAGGAAGCCAGTACCTCGATCTTCGGCAAGGGCTCG
AGCAACTTTCTGTTCGGCGCGCCCGGCACGGTACCGGGCGTCAACGTCACACCTGGCGCTGTGGGCGGCATAACGCCGAG
CATTCCGCTGAACAACAGCAATTTCAATATCGTCTGGGGCGGTGGCAGCAGCAAGGTGCTGGGCATGATCAACGCCATGG
AAAACAGCGGCTACGCCTACACCCTGGCACGCCCCAGCCTGGTCGCCCTCAACGGGCAAAGCGCGAGCTTTCTGGCCGGC
GGCGAATTCCCGGTGCCGGTGCCCAATGGTGAAGGCAACGGTATCTCCATCGAGTACAAGGAGTTTGGCGTGCGCCTGAC
CCTGACCCCGACTGTCGTGGGCCGGGATCGGATTCTGCTGAAGGTCGCGCCGGAAGTCAGCGAGCTGGATTTCTCGGCCG
GCATCACCATCGCCGGGACCACCGTGCCAGCGCTGAACATCCGCCGTACCGACACCAGCATTGCGCTTGCCGACGGCGAG
AGCTTCGTGGTCAGCGGCCTGATCAGTTCCAGCAACAGCGGTTCGGTGGACAAGTTTCCCGGCCTCGGCGACATCCCGAT
TCTCGGTGCCTTTTTCCGCAGCTCGCAAATCCAGCGCGACGAGCGCGAACTGCTGATGATCGTCACTCCGCATCTGGTCC
AGCCACTGGCCGCCAACGCCCGGCTGCCGTCGCTGCCGGGTGAGGCACTGCGCACCTATGACCCGAGCTTCCCGCGCCTG
TATTTTCTGGAAAACGGCGATTTCGACCGCCGCGACGGGTTATCCAAATGA

Upstream 100 bases:

>100_bases
CAATATCAGGCGCAACCCCGCGTACGTCTCGCGCTGTCGAGGTCATACGCGGTAACCAGATCACGCAACAAACTCCCTGA
TTGAGCAAGGATTGCATTTG

Downstream 100 bases:

>100_bases
GCCAGAGCCTGAGCCAGACCTTCCTGGCAATCACCCGTAACAATACCGACCTGGAGTGGCTGCAAAGTGCCCTGGGTTCG
TTGGGCCAGGTGGTCAGTGC

Product: type II and III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 416; Mature: 415

Protein sequence:

>416_residues
MSCCSVPVIKPRLLALVIATLCAPGAWAASGSCAGLAAMPAAVEIDQGIQQEVRSAVPITRIAVGDPKIADVHVNGTDGF
LLTGVAQGTTSLMVWTACASAPRQSMVFVRGRATTAMVESVTAPSADAQLPSQVQTDIRFIEVSRTKLKEASTSIFGKGS
SNFLFGAPGTVPGVNVTPGAVGGITPSIPLNNSNFNIVWGGGSSKVLGMINAMENSGYAYTLARPSLVALNGQSASFLAG
GEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGE
SFVVSGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLAANARLPSLPGEALRTYDPSFPRL
YFLENGDFDRRDGLSK

Sequences:

>Translated_416_residues
MSCCSVPVIKPRLLALVIATLCAPGAWAASGSCAGLAAMPAAVEIDQGIQQEVRSAVPITRIAVGDPKIADVHVNGTDGF
LLTGVAQGTTSLMVWTACASAPRQSMVFVRGRATTAMVESVTAPSADAQLPSQVQTDIRFIEVSRTKLKEASTSIFGKGS
SNFLFGAPGTVPGVNVTPGAVGGITPSIPLNNSNFNIVWGGGSSKVLGMINAMENSGYAYTLARPSLVALNGQSASFLAG
GEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGE
SFVVSGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLAANARLPSLPGEALRTYDPSFPRL
YFLENGDFDRRDGLSK
>Mature_415_residues
SCCSVPVIKPRLLALVIATLCAPGAWAASGSCAGLAAMPAAVEIDQGIQQEVRSAVPITRIAVGDPKIADVHVNGTDGFL
LTGVAQGTTSLMVWTACASAPRQSMVFVRGRATTAMVESVTAPSADAQLPSQVQTDIRFIEVSRTKLKEASTSIFGKGSS
NFLFGAPGTVPGVNVTPGAVGGITPSIPLNNSNFNIVWGGGSSKVLGMINAMENSGYAYTLARPSLVALNGQSASFLAGG
EFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGES
FVVSGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLAANARLPSLPGEALRTYDPSFPRLY
FLENGDFDRRDGLSK

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=180, Percent_Identity=32.2222222222222, Blast_Score=92, Evalue=8e-20,
Organism=Escherichia coli, GI87082242, Length=184, Percent_Identity=30.9782608695652, Blast_Score=83, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 43393; Mature: 43262

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSCCSVPVIKPRLLALVIATLCAPGAWAASGSCAGLAAMPAAVEIDQGIQQEVRSAVPIT
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCEEHHHHHHHHHHHCCCEE
RIAVGDPKIADVHVNGTDGFLLTGVAQGTTSLMVWTACASAPRQSMVFVRGRATTAMVES
EEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEEHHCCCCCCCEEEEECCCHHHHHHH
VTAPSADAQLPSQVQTDIRFIEVSRTKLKEASTSIFGKGSSNFLFGAPGTVPGVNVTPGA
HCCCCCCCCCCHHHHCCEEEEEEHHHHHHHHHHHEECCCCCCEEEECCCCCCCCCCCCCC
VGGITPSIPLNNSNFNIVWGGGSSKVLGMINAMENSGYAYTLARPSLVALNGQSASFLAG
CCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCEEEEECCCEEEEECCCCCEEEEC
GEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLKVAPEVSELDFSAGITIAGT
CCCCCCCCCCCCCEEEEEEHHHCEEEEEECEEECCCEEEEEECCCHHHCHHCCCEEEEEC
TVPALNIRRTDTSIALADGESFVVSGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRD
CCCEEEEEECCCEEEEECCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC
ERELLMIVTPHLVQPLAANARLPSLPGEALRTYDPSFPRLYFLENGDFDRRDGLSK
CCEEEEEECHHHHHHHHCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHCCCCC
>Mature Secondary Structure 
SCCSVPVIKPRLLALVIATLCAPGAWAASGSCAGLAAMPAAVEIDQGIQQEVRSAVPIT
CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCEEHHHHHHHHHHHCCCEE
RIAVGDPKIADVHVNGTDGFLLTGVAQGTTSLMVWTACASAPRQSMVFVRGRATTAMVES
EEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEEHHCCCCCCCEEEEECCCHHHHHHH
VTAPSADAQLPSQVQTDIRFIEVSRTKLKEASTSIFGKGSSNFLFGAPGTVPGVNVTPGA
HCCCCCCCCCCHHHHCCEEEEEEHHHHHHHHHHHEECCCCCCEEEECCCCCCCCCCCCCC
VGGITPSIPLNNSNFNIVWGGGSSKVLGMINAMENSGYAYTLARPSLVALNGQSASFLAG
CCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCEEEEECCCEEEEECCCCCEEEEC
GEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLKVAPEVSELDFSAGITIAGT
CCCCCCCCCCCCCEEEEEEHHHCEEEEEECEEECCCEEEEEECCCHHHCHHCCCEEEEEC
TVPALNIRRTDTSIALADGESFVVSGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRD
CCCEEEEEECCCEEEEECCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC
ERELLMIVTPHLVQPLAANARLPSLPGEALRTYDPSFPRLYFLENGDFDRRDGLSK
CCEEEEEECHHHHHHHHCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]