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The map label for this gene is tdcF [C]

Identifier: 66047554

GI number: 66047554

Start: 5179913

End: 5180296

Strand: Reverse

Name: tdcF [C]

Synonym: Psyr_4327

Alternate gene names: 66047554

Gene position: 5180296-5179913 (Counterclockwise)

Preceding gene: 66047557

Following gene: 66047553

Centisome position: 85.01

GC content: 65.36

Gene sequence:

>384_bases
ATGGCAAACGCAGACATCACCTTCACCCCCGATCCCGACCCGGAGTCCATCTCCTCGGACGTCGCCGACTTCAACGGCGT
GCTGGTCAGCACCCAAATCCCCACCCACCCCGACGGCAGCCTGGAACTGGGCGGCATCACCGAGCAGAGCGAGTGCACCC
TGCGAGCCCTGAAAGACGCCCTCGAACGCGCCGGCAGCTCGATGGACCGGGTCATGCACCTGACCATCTACCTCACCGAC
ATGGCCGATCGCGCAGCCTTCAACGAAGTGTACAAACGCTTCTTCAAAAAACCGTGGCCCGTGCGCGCAGCGGTGGGCGT
GGCGGCGTTGGCGGTTGAAGGGATGCGGGTGGAAGTGACGGCGATGGCGGCCAGGGCGGGCTGA

Upstream 100 bases:

>100_bases
GCGGCGCATTTCAACTTTCCGCGCCAAAGCCCACGGCTCGACCCCCATCTTTCGCTCGCGTAGGCTTGGCGTTTTCCATC
CTTTGCAAAGCAGAGAACGC

Downstream 100 bases:

>100_bases
CCATTATTCGCCAACCTGGCTGATGCTCGCGTCAGTGCTCTGCACCTGTGCAGAGTTGCACATCCCGTGGAACCGGATCT
CGTTGCTTGCCACCAAGGCG

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 126

Protein sequence:

>127_residues
MANADITFTPDPDPESISSDVADFNGVLVSTQIPTHPDGSLELGGITEQSECTLRALKDALERAGSSMDRVMHLTIYLTD
MADRAAFNEVYKRFFKKPWPVRAAVGVAALAVEGMRVEVTAMAARAG

Sequences:

>Translated_127_residues
MANADITFTPDPDPESISSDVADFNGVLVSTQIPTHPDGSLELGGITEQSECTLRALKDALERAGSSMDRVMHLTIYLTD
MADRAAFNEVYKRFFKKPWPVRAAVGVAALAVEGMRVEVTAMAARAG
>Mature_126_residues
ANADITFTPDPDPESISSDVADFNGVLVSTQIPTHPDGSLELGGITEQSECTLRALKDALERAGSSMDRVMHLTIYLTDM
ADRAAFNEVYKRFFKKPWPVRAAVGVAALAVEGMRVEVTAMAARAG

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=98, Percent_Identity=37.7551020408163, Blast_Score=69, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71982075, Length=79, Percent_Identity=44.3037974683544, Blast_Score=69, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI71982068, Length=79, Percent_Identity=44.3037974683544, Blast_Score=69, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI25148896, Length=79, Percent_Identity=44.3037974683544, Blast_Score=69, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6320899, Length=101, Percent_Identity=39.6039603960396, Blast_Score=80, Evalue=9e-17,
Organism=Saccharomyces cerevisiae, GI6322138, Length=112, Percent_Identity=35.7142857142857, Blast_Score=73, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13673; Mature: 13541

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANADITFTPDPDPESISSDVADFNGVLVSTQIPTHPDGSLELGGITEQSECTLRALKDA
CCCCCEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCEEECCCCCCHHHHHHHHHHH
LERAGSSMDRVMHLTIYLTDMADRAAFNEVYKRFFKKPWPVRAAVGVAALAVEGMRVEVT
HHHCCCHHHHHEEEEEEEECHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEE
AMAARAG
EECCCCC
>Mature Secondary Structure 
ANADITFTPDPDPESISSDVADFNGVLVSTQIPTHPDGSLELGGITEQSECTLRALKDA
CCCCEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCEEECCCCCCHHHHHHHHHHH
LERAGSSMDRVMHLTIYLTDMADRAAFNEVYKRFFKKPWPVRAAVGVAALAVEGMRVEVT
HHHCCCHHHHHEEEEEEEECHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEE
AMAARAG
EECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]