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The map label for this gene is yagT [H]

Identifier: 66047512

GI number: 66047512

Start: 5110704

End: 5111234

Strand: Reverse

Name: yagT [H]

Synonym: Psyr_4285

Alternate gene names: 66047512

Gene position: 5111234-5110704 (Counterclockwise)

Preceding gene: 66047519

Following gene: 66047511

Centisome position: 83.88

GC content: 61.96

Gene sequence:

>531_bases
ATGAGTGCAACGACCCCGAACCCCCAGGACTTCGCCACCCACGCGATTTCCCTGACCCTGAACGGACAGCTCCGCCAACT
GGATGTGCTGCCCTGGACCACCTTGCTGGACTTGCTGCGTGATCAGCTCGATCTGGTCGGCACCAAAAAAGGCTGCGACC
ACGGCCAGTGTGGTGCGTGTACCGTACTGCGCGACGGCACGCGCATCAATGCCTGCCTGACGCTGGCGATCATGTGCGAT
GGCGCCGAGCTGACCACCATTGAAGGCCTGGCTGATGGCGACCAGTTGCATCCCATGCAGCAGGCGTTCATCAAGAACGA
TGCGTTCCAGTGCGGCTACTGCACGCCCGGGCAAATCTGCTCGGCTGTCGGGCTTGCCAATGAGGGGCGCGCCAGCACGC
GTGCCGAGATTCAGGAACTGATGAGCGGTAACCTGTGCCGTTGCGGTGCCTACAGCAATATTCTCGCTGCCGTCGAAGAG
GCGCTGCCGCAGTTCCACAACGCAGCACCAAAGCCGGAGGTGAACGCATGA

Upstream 100 bases:

>100_bases
TACGCCCATCAAGAAAGCCTGAACGTTGCAAACCTCGCGAAGTCCCACCCCTTAAGACGCATAAAAAGTGCGCTAAGTGA
CCGCCTACCGTGAGGTTTCC

Downstream 100 bases:

>100_bases
ATCCGTTTACCTACAGCAAGCCGACCGACATCACTGCTGCGGTCAACCTGAGCGGACCGGCCACGCGTTTCATTGCAGGC
GGCACCAATCTGCTTGACCT

Product: ferredoxin:[2Fe-2S]-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MSATTPNPQDFATHAISLTLNGQLRQLDVLPWTTLLDLLRDQLDLVGTKKGCDHGQCGACTVLRDGTRINACLTLAIMCD
GAELTTIEGLADGDQLHPMQQAFIKNDAFQCGYCTPGQICSAVGLANEGRASTRAEIQELMSGNLCRCGAYSNILAAVEE
ALPQFHNAAPKPEVNA

Sequences:

>Translated_176_residues
MSATTPNPQDFATHAISLTLNGQLRQLDVLPWTTLLDLLRDQLDLVGTKKGCDHGQCGACTVLRDGTRINACLTLAIMCD
GAELTTIEGLADGDQLHPMQQAFIKNDAFQCGYCTPGQICSAVGLANEGRASTRAEIQELMSGNLCRCGAYSNILAAVEE
ALPQFHNAAPKPEVNA
>Mature_175_residues
SATTPNPQDFATHAISLTLNGQLRQLDVLPWTTLLDLLRDQLDLVGTKKGCDHGQCGACTVLRDGTRINACLTLAIMCDG
AELTTIEGLADGDQLHPMQQAFIKNDAFQCGYCTPGQICSAVGLANEGRASTRAEIQELMSGNLCRCGAYSNILAAVEEA
LPQFHNAAPKPEVNA

Specific function: Iron-sulfur subunit of the xanthine dehydrogenase complex [H]

COG id: COG2080

COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 2Fe-2S ferredoxin-type domain [H]

Homologues:

Organism=Homo sapiens, GI91823271, Length=136, Percent_Identity=41.9117647058824, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI71773480, Length=89, Percent_Identity=37.0786516853933, Blast_Score=66, Evalue=2e-11,
Organism=Escherichia coli, GI1786480, Length=176, Percent_Identity=57.3863636363636, Blast_Score=198, Evalue=2e-52,
Organism=Escherichia coli, GI1789232, Length=148, Percent_Identity=45.945945945946, Blast_Score=120, Evalue=6e-29,
Organism=Caenorhabditis elegans, GI17540638, Length=156, Percent_Identity=36.5384615384615, Blast_Score=100, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI17539860, Length=155, Percent_Identity=34.8387096774194, Blast_Score=99, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI32566215, Length=156, Percent_Identity=35.8974358974359, Blast_Score=97, Evalue=5e-21,
Organism=Drosophila melanogaster, GI17737937, Length=146, Percent_Identity=38.3561643835616, Blast_Score=97, Evalue=7e-21,
Organism=Drosophila melanogaster, GI24647199, Length=138, Percent_Identity=41.304347826087, Blast_Score=96, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24647197, Length=162, Percent_Identity=37.037037037037, Blast_Score=94, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24647195, Length=162, Percent_Identity=37.037037037037, Blast_Score=94, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24647201, Length=156, Percent_Identity=35.8974358974359, Blast_Score=92, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24647193, Length=157, Percent_Identity=35.6687898089172, Blast_Score=86, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002888
- InterPro:   IPR006058
- InterPro:   IPR012675
- InterPro:   IPR001041
- InterPro:   IPR006311 [H]

Pfam domain/function: PF00111 Fer2; PF01799 Fer2_2 [H]

EC number: NA

Molecular weight: Translated: 18747; Mature: 18615

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: PS00070 ALDEHYDE_DEHYDR_CYS ; PS00197 2FE2S_FER_1 ; PS51085 2FE2S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
8.0 %Cys+Met (Translated Protein)
5.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSATTPNPQDFATHAISLTLNGQLRQLDVLPWTTLLDLLRDQLDLVGTKKGCDHGQCGAC
CCCCCCCHHHHHHEEEEEEECCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEE
TVLRDGTRINACLTLAIMCDGAELTTIEGLADGDQLHPMQQAFIKNDAFQCGYCTPGQIC
EEEECCCCHHHEEEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHH
SAVGLANEGRASTRAEIQELMSGNLCRCGAYSNILAAVEEALPQFHNAAPKPEVNA
HHHCCCCCCCCHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SATTPNPQDFATHAISLTLNGQLRQLDVLPWTTLLDLLRDQLDLVGTKKGCDHGQCGAC
CCCCCCHHHHHHEEEEEEECCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEE
TVLRDGTRINACLTLAIMCDGAELTTIEGLADGDQLHPMQQAFIKNDAFQCGYCTPGQIC
EEEECCCCHHHEEEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHH
SAVGLANEGRASTRAEIQELMSGNLCRCGAYSNILAAVEEALPQFHNAAPKPEVNA
HHHCCCCCCCCHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]