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The map label for this gene is vanR [H]

Identifier: 66047443

GI number: 66047443

Start: 5021667

End: 5022431

Strand: Direct

Name: vanR [H]

Synonym: Psyr_4216

Alternate gene names: 66047443

Gene position: 5021667-5022431 (Clockwise)

Preceding gene: 66047435

Following gene: 66047444

Centisome position: 82.41

GC content: 60.13

Gene sequence:

>765_bases
ATGCATATCAGGTTGTCGGATTTCAATTCGCGGCTGCAGTCTGCATCTACGCTGGATCAGCAAATGGATTGCGCGCTGCT
GCTGGCATCGGATCTCGGATTCGATGCCGTGATTTACGACTACAGCCCGGTGCCAGTGTCCCATGATGGAGCACTGATCA
CCCCGTCGCTGCTTTCATTGCGCAATACACCTGCGGACTGGCACGCGCTTTGGTGCAGTCAGGGCTATTACCAGATCGAT
CCGGTGCAACACCTGGCCGTCGCCAGCGTCTCGCCGTTCGTATGGTCATACCTGCCCAGGGCCGAGACGGTGCTGAAAAC
CTTCATCACGGATATGCACAAGCCGGTGGTGCGCTATCTGCATGACTCACACATGACCTGCGGCGTAACGGTGCCGATCC
ACATGCCCAAGGGCGGTTTCGCCACGCTGACCGGGCTGTGTACGGACGGCAGCGATGTCGCCCTCGAGGACGCCCGCCAG
AGCCTGGCCGAGTTTGGCCTGCTCGCTCACGCCTTTCAGGAGGTCGCCTACCCGCTGTTCGACCAGAAAATACGCTCATG
CAATGCGATCAGGCTGACCCCGCGTGAGCGCGAATGCCTGAGCTGGTCTGCCGAGGGCCTGACGGCGAGGGAGATTGCCG
ATCAGCTCAACCGCTCTGTCGCTACGGTGACCTTGCACCTGAATTCGGCCATGCAGAAGCTGGGGGCAAAAAACCGTGTG
CAGGCGGTGGTGCGTGCCGTTCACTACCGTTTACTCGACCACTGA

Upstream 100 bases:

>100_bases
TTTACAGGACTGGCAGCCGATTGGACGCATGCGTGGCACCGTCCTTGCTAATTGCTATATTAGAGCCCTACATCGGCTCA
ATGACAAAGGAGGTCATGCC

Downstream 100 bases:

>100_bases
CCGGATTATCGGCCAAAACCTATCATTTTCTATAGTTATGAGGCGCAAGACGCCGCGCTATGGTGCCCCCAAACTATCCA
GCAGGGACCGGCGACATGGC

Product: regulatory protein, LuxR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MHIRLSDFNSRLQSASTLDQQMDCALLLASDLGFDAVIYDYSPVPVSHDGALITPSLLSLRNTPADWHALWCSQGYYQID
PVQHLAVASVSPFVWSYLPRAETVLKTFITDMHKPVVRYLHDSHMTCGVTVPIHMPKGGFATLTGLCTDGSDVALEDARQ
SLAEFGLLAHAFQEVAYPLFDQKIRSCNAIRLTPRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRV
QAVVRAVHYRLLDH

Sequences:

>Translated_254_residues
MHIRLSDFNSRLQSASTLDQQMDCALLLASDLGFDAVIYDYSPVPVSHDGALITPSLLSLRNTPADWHALWCSQGYYQID
PVQHLAVASVSPFVWSYLPRAETVLKTFITDMHKPVVRYLHDSHMTCGVTVPIHMPKGGFATLTGLCTDGSDVALEDARQ
SLAEFGLLAHAFQEVAYPLFDQKIRSCNAIRLTPRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRV
QAVVRAVHYRLLDH
>Mature_254_residues
MHIRLSDFNSRLQSASTLDQQMDCALLLASDLGFDAVIYDYSPVPVSHDGALITPSLLSLRNTPADWHALWCSQGYYQID
PVQHLAVASVSPFVWSYLPRAETVLKTFITDMHKPVVRYLHDSHMTCGVTVPIHMPKGGFATLTGLCTDGSDVALEDARQ
SLAEFGLLAHAFQEVAYPLFDQKIRSCNAIRLTPRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRV
QAVVRAVHYRLLDH

Specific function: Probable transcriptional activator. Binds to autoinducer molecule ODHL [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 28230; Mature: 28230

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHIRLSDFNSRLQSASTLDQQMDCALLLASDLGFDAVIYDYSPVPVSHDGALITPSLLSL
CEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEECHHHHHH
RNTPADWHALWCSQGYYQIDPVQHLAVASVSPFVWSYLPRAETVLKTFITDMHKPVVRYL
CCCCCHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
HDSHMTCGVTVPIHMPKGGFATLTGLCTDGSDVALEDARQSLAEFGLLAHAFQEVAYPLF
HHCCCEEEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DQKIRSCNAIRLTPRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRV
HHHHHCCCCEEECCCHHHHHCCCCCCCCHHHHHHHHCCCEEEEEEEHHHHHHHHCCHHHH
QAVVRAVHYRLLDH
HHHHHHHHHHHHCC
>Mature Secondary Structure
MHIRLSDFNSRLQSASTLDQQMDCALLLASDLGFDAVIYDYSPVPVSHDGALITPSLLSL
CEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEECHHHHHH
RNTPADWHALWCSQGYYQIDPVQHLAVASVSPFVWSYLPRAETVLKTFITDMHKPVVRYL
CCCCCHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
HDSHMTCGVTVPIHMPKGGFATLTGLCTDGSDVALEDARQSLAEFGLLAHAFQEVAYPLF
HHCCCEEEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DQKIRSCNAIRLTPRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRV
HHHHHCCCCEEECCCHHHHHCCCCCCCCHHHHHHHHCCCEEEEEEEHHHHHHHHCCHHHH
QAVVRAVHYRLLDH
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9139920 [H]