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The map label for this gene is omlA [H]

Identifier: 66047426

GI number: 66047426

Start: 4995788

End: 4996309

Strand: Direct

Name: omlA [H]

Synonym: Psyr_4199

Alternate gene names: 66047426

Gene position: 4995788-4996309 (Clockwise)

Preceding gene: 66047424

Following gene: 66047430

Centisome position: 81.98

GC content: 58.24

Gene sequence:

>522_bases
ATGCAAAACACCAAGCTCTTGCTAACCAGTTTCACCTTCGTGGGACTGCTCGCACTCGCCGGTTGTTCATTCCCCGGGGT
TTACAAAATCGACATCCAGCAGGGTAATGTCGTCACGCAGGACATGATAGACCAGTTACGCCCCGGAATGACCCGGCGGC
AAGTACGGTTTATCATGGGCAACCCCCTGCTGACCGACACTTTCCACTCCGATCGGTGGGATTACCTGTACAGCCTGCAG
CCAGGTGGCGGTGAACGCCAGCAGGAGCGTGTCAGCCTCATATTCAACGGCAATGACCAGCTCGTGAGCCTGTCTGGCGA
CTTCATGCCCGGCGTCAGCCGCGATGAAGCCATTCTCGGCAAGGACAGCAACACCACTGTCCCGGCAGAGAACCAGCCAG
TGCAGCAGCCTGAAGAGCCGGCCAAGCCAGGTTCGTTGCTGGATAAAATCCAGAAAGACGTGGACAGCGTCGAGACCGTA
CCGGTCCCGACTCAGGAACCGCTGGACACCAACTCCCGGTAG

Upstream 100 bases:

>100_bases
ATGGTCAGCTTTCTCGCAGACGCTGCTTCGCAGCTTCTCTTAATGCAGGTATGATCGGAGTTTACGTTGTCCCAGCCAAG
ATAGTGGAAGTCGCCCACCG

Downstream 100 bases:

>100_bases
TCCAAAGCGTCCAACAAAAAGCCCGGCATGCCGGGCTTTTTGTGCTTTCCATTCAGCCTGCGTTCAGCCGGGAAGCCCTC
TTTTCTCACGCGCCCTGGCG

Product: SmpA/OmlA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MQNTKLLLTSFTFVGLLALAGCSFPGVYKIDIQQGNVVTQDMIDQLRPGMTRRQVRFIMGNPLLTDTFHSDRWDYLYSLQ
PGGGERQQERVSLIFNGNDQLVSLSGDFMPGVSRDEAILGKDSNTTVPAENQPVQQPEEPAKPGSLLDKIQKDVDSVETV
PVPTQEPLDTNSR

Sequences:

>Translated_173_residues
MQNTKLLLTSFTFVGLLALAGCSFPGVYKIDIQQGNVVTQDMIDQLRPGMTRRQVRFIMGNPLLTDTFHSDRWDYLYSLQ
PGGGERQQERVSLIFNGNDQLVSLSGDFMPGVSRDEAILGKDSNTTVPAENQPVQQPEEPAKPGSLLDKIQKDVDSVETV
PVPTQEPLDTNSR
>Mature_173_residues
MQNTKLLLTSFTFVGLLALAGCSFPGVYKIDIQQGNVVTQDMIDQLRPGMTRRQVRFIMGNPLLTDTFHSDRWDYLYSLQ
PGGGERQQERVSLIFNGNDQLVSLSGDFMPGVSRDEAILGKDSNTTVPAENQPVQQPEEPAKPGSLLDKIQKDVDSVETV
PVPTQEPLDTNSR

Specific function: May have a structural role in maintaining the cell envelope integrity [H]

COG id: COG2913

COG function: function code J; Small protein A (tmRNA-binding)

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpA/omlA family [H]

Homologues:

Organism=Escherichia coli, GI87082138, Length=108, Percent_Identity=37.037037037037, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007450 [H]

Pfam domain/function: PF04355 SmpA_OmlA [H]

EC number: NA

Molecular weight: Translated: 19166; Mature: 19166

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNTKLLLTSFTFVGLLALAGCSFPGVYKIDIQQGNVVTQDMIDQLRPGMTRRQVRFIMG
CCCCEEHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEHHHHHHHHCCCCCHHHEEHEEC
NPLLTDTFHSDRWDYLYSLQPGGGERQQERVSLIFNGNDQLVSLSGDFMPGVSRDEAILG
CCEEECCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCEEEE
KDSNTTVPAENQPVQQPEEPAKPGSLLDKIQKDVDSVETVPVPTQEPLDTNSR
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQNTKLLLTSFTFVGLLALAGCSFPGVYKIDIQQGNVVTQDMIDQLRPGMTRRQVRFIMG
CCCCEEHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEHHHHHHHHCCCCCHHHEEHEEC
NPLLTDTFHSDRWDYLYSLQPGGGERQQERVSLIFNGNDQLVSLSGDFMPGVSRDEAILG
CCEEECCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCEEEE
KDSNTTVPAENQPVQQPEEPAKPGSLLDKIQKDVDSVETVPVPTQEPLDTNSR
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9973334 [H]