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The map label for this gene is rlpA [H]

Identifier: 66047394

GI number: 66047394

Start: 4957358

End: 4957795

Strand: Direct

Name: rlpA [H]

Synonym: Psyr_4167

Alternate gene names: 66047394

Gene position: 4957358-4957795 (Clockwise)

Preceding gene: 66047393

Following gene: 66047395

Centisome position: 81.35

GC content: 61.87

Gene sequence:

>438_bases
ATGCATGCCAGCATGGAGGATTGGCACGAGCGTCAACCACAACTACTCCGGCACTCAGGAACCCACCCCATGCGCCGCCT
TATTTTTACCTGCAGCCTGCTGACGTTACTGGCAGGGTGCGCCAATCACATCATCGACCCCCATGGTTATGACGAGACCG
GCACCGCCGCCTATTACGGCGCCCGCCATCACGGCAACCGCACTGCCAGCGGCGAGCCGTTCAATCAGAACGCGCTGACC
GCTGCACATCGCCAACTGCCCTTCGGCACGCGCGTCAAGGTCACCAACCTGGACAATGACAGGTCGGTAGTCGTGCGCGT
CAACGATCGCGGCCCTCACACCCGTGGTCGTCTGATCGATGTCTCTCGCGAAGCGGCCGAACAACTGGGTATGCTGCGCA
GCGGGACAGCGCCAGTCCGTGTGCAGGCACTGGATTAA

Upstream 100 bases:

>100_bases
ATAACGATGAGCGCTCTGCGTGGGAATGCAGTTCTGGACGCTCTGCGTCCGCTGTCGAGTACGCACTGCAACACCGAGTT
GCGACGCGGAGCGTCACGAA

Downstream 100 bases:

>100_bases
ACCCAACCCCCGATCACCGCCAACAAGGACACTCGTATTCTCCAGCTATCGGCCCTGCCCGCCCCCGCACTTATCCAGAT
GCTCAGTGGCTTGTTATTGC

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MHASMEDWHERQPQLLRHSGTHPMRRLIFTCSLLTLLAGCANHIIDPHGYDETGTAAYYGARHHGNRTASGEPFNQNALT
AAHRQLPFGTRVKVTNLDNDRSVVVRVNDRGPHTRGRLIDVSREAAEQLGMLRSGTAPVRVQALD

Sequences:

>Translated_145_residues
MHASMEDWHERQPQLLRHSGTHPMRRLIFTCSLLTLLAGCANHIIDPHGYDETGTAAYYGARHHGNRTASGEPFNQNALT
AAHRQLPFGTRVKVTNLDNDRSVVVRVNDRGPHTRGRLIDVSREAAEQLGMLRSGTAPVRVQALD
>Mature_145_residues
MHASMEDWHERQPQLLRHSGTHPMRRLIFTCSLLTLLAGCANHIIDPHGYDETGTAAYYGARHHGNRTASGEPFNQNALT
AAHRQLPFGTRVKVTNLDNDRSVVVRVNDRGPHTRGRLIDVSREAAEQLGMLRSGTAPVRVQALD

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=86, Percent_Identity=47.6744186046512, Blast_Score=84, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 16138; Mature: 16138

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHASMEDWHERQPQLLRHSGTHPMRRLIFTCSLLTLLAGCANHIIDPHGYDETGTAAYYG
CCCCHHHHHHHCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEC
ARHHGNRTASGEPFNQNALTAAHRQLPFGTRVKVTNLDNDRSVVVRVNDRGPHTRGRLID
CHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEE
VSREAAEQLGMLRSGTAPVRVQALD
CCHHHHHHHHHHHCCCCCEEEEECC
>Mature Secondary Structure
MHASMEDWHERQPQLLRHSGTHPMRRLIFTCSLLTLLAGCANHIIDPHGYDETGTAAYYG
CCCCHHHHHHHCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEC
ARHHGNRTASGEPFNQNALTAAHRQLPFGTRVKVTNLDNDRSVVVRVNDRGPHTRGRLID
CHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEE
VSREAAEQLGMLRSGTAPVRVQALD
CCHHHHHHHHHHHCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10688204 [H]