Click here to switch to the map view.

The map label for this gene is arcB [C]

Identifier: 66047223

GI number: 66047223

Start: 4757326

End: 4759716

Strand: Direct

Name: arcB [C]

Synonym: Psyr_3996

Alternate gene names: 66047223

Gene position: 4757326-4759716 (Clockwise)

Preceding gene: 66047222

Following gene: 66047224

Centisome position: 78.07

GC content: 61.27

Gene sequence:

>2391_bases
ATGGGTCGGTTTATCCGAGAGACGGACTGGTCGACGTCCGCGCTGGGACCTAAGCAAGCATGGCCCGCAGCGCTACTGTC
TTCAATGAATCTGATGCTCAGTTGCCCTGACAGCATGTACCTGCTCTGGGGCCCGGACTACACCCTGTTTTTCAATGACG
CTTACGCTCAGGTCCTGCCCATCGCGGCAGCACAGGCGCAGGGGCAGCCCATTGCCTCGGTCTGGGGCGATGCCTGGGAA
GCCGTGCGGCCGCTCGCCGAGCAGGCGCTGGCCGGACAAAACCGCCGCTCCGACAATATTCAGCGCACCATCGTGCGCAA
TGGCAAGCCCGAGCAGACCTGGTGGTCGCTGTCCTACTCGCCGCTGTATGGCGATAGCGGCCTGATCGAGGGCGTGTTCT
GCCGTGTCAACGAGACCACCTTGCAGGTCATGGCTGAAGCACGTCAGTCGGAAAACGAAGCGTTCACGGACCGTGTGCTG
TCGAGCATCAACGACTGCATCAAGGTGCTGGACCTGGACTCGCGCCTGACCTTCATGAGTGAGGGCGGTCAGCGGATCAT
GGAGGTCAGCGATTTCAACGCGATTCGCGGCTGCCCCTGGCCTGACTTCTGGCAGGAACAGGGCAATCTGGACGCCATCG
CGGCAGTCGAAGCGGCCAGAGCGGGTCAGAACGCCAGTTTTACGGGCTCGGCGAGAACCCTGGCCGGCACCACCAAGTGG
TGGCACGTGCAGGTCAGCCCGATTTTCGGCAAGGATGGCAAACCGGAGAAGATCCTCTGTGTGTCCAGGGACATGACCCA
GCTCAGAGACGCTGAAGAAGCCCTGCTGTCGCTCAACGAGACGCTCGAGCAGCGCGTGGTCGAACGCACCCAGGACCGTG
ATCGCATCTGGCGGCTATCGACCGACCTGATGCTGGTGGCGCAGTTCGACGGGATCATCTCGGCAGTCAATCCGGCATGG
ACGCAAGCCCTCGGCTGGTCGGAAGAACAACTGCTCGACAGCCAGTTTCTGGCACTGGTGCACCCTGAGGACGTGGACAG
TACGCTGGCCGCCATGAGCGGGCTGGAGAACGGCCGCACCATCCCGCACTTCAAGAATCGCTATCGCCATCAGGACGGCT
CGTACCGGACCATCTCCTGGACGGCCGTGCCGGACAAGCAATTCATCCATGCCGTCGGCCGTGACATTCAGGCCGAGGAA
GAGGCCAATGAAGCGCTGCGGCTTTCACAGGACGCCCTGCATCAGGCGCAGAAGCTGGAAGCCATTGGCCAACTTACCGG
CGGCGTAGCGCATGACTTCAATAATCTGTTGACGGTGATCCGCTCCTGCAGCGACCTGCTGAAGTCGCCAAACCTCGAAG
AGCATCGTCGCGTCAAATACGTCGAAGCCATTTCCAGCACGGTGGACCGGGCCGCGCGCCTGACCGGACAGTTGCTGGCG
TTTGCCCGCCGTCAGGCCTTGCAGCCGGAAGTGTTCGATGTGTGCAAAAGCGTGGCGCGCATTGGCGAGATGATGGACAC
GCTGACCGGCGCGCGGATTCAGGTCAGCATCGACCTGCCTGCCGAGCCGTGCTTCATCTTCGCCGATGGCAGCCAGTTCG
ATACTGCGCTGGTCAACATGGTGGTCAACGCCCGCGATGCGATGTCCGGCGCGGGGCGGCTGGTCATCAAGGTTGAATGC
GCTGCCTGTCCTGCCGACGATCAACCCGCTTCACTCGGCGAGGGTGACTATATAGAGGGTGACTATGTAAGGGTATCGCT
GACCGATACCGGCGCCGGTATTGCCAAGGAGAAGCTGGGGCTGATCTTCGAACCGTTCTATACCACCAAGAGTGTCGGCC
AGGGCACCGGGCTGGGGTTGTCGCAGGTATTCGGTTTTGCCAAACAGTCGGGTGGTGAAGTGCTGGTTGAAAGCGAGCTG
GGCAAAGGCAGCCGCTTCACGCTGTGCCTGCCCAGCGCACAGAATCACGAAGTCGTCCAGGAAGACCATCGCCACACCCT
CACCCCATTGCCCGGGCTGTGCGTGCTGATGGTCGAGGACAATCAGGACATCGGCACCTATACCCGCCCCATGCTTGAGC
AACTGGGCTTTCAGGTGCTCTGGGTAAGCAGTGCCGCCGAAGCGCTGAAAGAGCTTTCCGGCAACCCGGAAAACTTCCAT
GTGGTGTTCTCGGATATCGCAATGCCGGGCATGAGCGGCCTGGAACTGTACGCCGAAATCGAAGCGCGCTATCCGTGGAT
GCCGGTGGTTCTTACCACCGGGTACAGCACGGAGTTCGCGACGATCGCCCAAGACGAAACACAGCGCTTCGACCTGTTGC
AGAAACCCTACTCCAGAGACGATCTGGCGGCGATTCTGCACAAGGCGGTGAGTCGTAGCGGCGAACACTGA

Upstream 100 bases:

>100_bases
ATCATGCCCGCATGGCTATTCAGCTCACTTTGACAGTCCGAAAGATGGGGCATTTTCTACCGTGAATACTCCCCTCGACC
TCCCATTGGGAGGCGGCGAA

Downstream 100 bases:

>100_bases
GGGGATGGATTCGCATCAATTCATCACGCCAGCGGATTCACTGATGCCTGATACGCATGAGTGAATCCCGGCACTTCCGA
CGCATAAACCCAAGACAACA

Product: PAS

Products: NA

Alternate protein names: Blue-light-activated histidine kinase; Response regulator [H]

Number of amino acids: Translated: 796; Mature: 795

Protein sequence:

>796_residues
MGRFIRETDWSTSALGPKQAWPAALLSSMNLMLSCPDSMYLLWGPDYTLFFNDAYAQVLPIAAAQAQGQPIASVWGDAWE
AVRPLAEQALAGQNRRSDNIQRTIVRNGKPEQTWWSLSYSPLYGDSGLIEGVFCRVNETTLQVMAEARQSENEAFTDRVL
SSINDCIKVLDLDSRLTFMSEGGQRIMEVSDFNAIRGCPWPDFWQEQGNLDAIAAVEAARAGQNASFTGSARTLAGTTKW
WHVQVSPIFGKDGKPEKILCVSRDMTQLRDAEEALLSLNETLEQRVVERTQDRDRIWRLSTDLMLVAQFDGIISAVNPAW
TQALGWSEEQLLDSQFLALVHPEDVDSTLAAMSGLENGRTIPHFKNRYRHQDGSYRTISWTAVPDKQFIHAVGRDIQAEE
EANEALRLSQDALHQAQKLEAIGQLTGGVAHDFNNLLTVIRSCSDLLKSPNLEEHRRVKYVEAISSTVDRAARLTGQLLA
FARRQALQPEVFDVCKSVARIGEMMDTLTGARIQVSIDLPAEPCFIFADGSQFDTALVNMVVNARDAMSGAGRLVIKVEC
AACPADDQPASLGEGDYIEGDYVRVSLTDTGAGIAKEKLGLIFEPFYTTKSVGQGTGLGLSQVFGFAKQSGGEVLVESEL
GKGSRFTLCLPSAQNHEVVQEDHRHTLTPLPGLCVLMVEDNQDIGTYTRPMLEQLGFQVLWVSSAAEALKELSGNPENFH
VVFSDIAMPGMSGLELYAEIEARYPWMPVVLTTGYSTEFATIAQDETQRFDLLQKPYSRDDLAAILHKAVSRSGEH

Sequences:

>Translated_796_residues
MGRFIRETDWSTSALGPKQAWPAALLSSMNLMLSCPDSMYLLWGPDYTLFFNDAYAQVLPIAAAQAQGQPIASVWGDAWE
AVRPLAEQALAGQNRRSDNIQRTIVRNGKPEQTWWSLSYSPLYGDSGLIEGVFCRVNETTLQVMAEARQSENEAFTDRVL
SSINDCIKVLDLDSRLTFMSEGGQRIMEVSDFNAIRGCPWPDFWQEQGNLDAIAAVEAARAGQNASFTGSARTLAGTTKW
WHVQVSPIFGKDGKPEKILCVSRDMTQLRDAEEALLSLNETLEQRVVERTQDRDRIWRLSTDLMLVAQFDGIISAVNPAW
TQALGWSEEQLLDSQFLALVHPEDVDSTLAAMSGLENGRTIPHFKNRYRHQDGSYRTISWTAVPDKQFIHAVGRDIQAEE
EANEALRLSQDALHQAQKLEAIGQLTGGVAHDFNNLLTVIRSCSDLLKSPNLEEHRRVKYVEAISSTVDRAARLTGQLLA
FARRQALQPEVFDVCKSVARIGEMMDTLTGARIQVSIDLPAEPCFIFADGSQFDTALVNMVVNARDAMSGAGRLVIKVEC
AACPADDQPASLGEGDYIEGDYVRVSLTDTGAGIAKEKLGLIFEPFYTTKSVGQGTGLGLSQVFGFAKQSGGEVLVESEL
GKGSRFTLCLPSAQNHEVVQEDHRHTLTPLPGLCVLMVEDNQDIGTYTRPMLEQLGFQVLWVSSAAEALKELSGNPENFH
VVFSDIAMPGMSGLELYAEIEARYPWMPVVLTTGYSTEFATIAQDETQRFDLLQKPYSRDDLAAILHKAVSRSGEH
>Mature_795_residues
GRFIRETDWSTSALGPKQAWPAALLSSMNLMLSCPDSMYLLWGPDYTLFFNDAYAQVLPIAAAQAQGQPIASVWGDAWEA
VRPLAEQALAGQNRRSDNIQRTIVRNGKPEQTWWSLSYSPLYGDSGLIEGVFCRVNETTLQVMAEARQSENEAFTDRVLS
SINDCIKVLDLDSRLTFMSEGGQRIMEVSDFNAIRGCPWPDFWQEQGNLDAIAAVEAARAGQNASFTGSARTLAGTTKWW
HVQVSPIFGKDGKPEKILCVSRDMTQLRDAEEALLSLNETLEQRVVERTQDRDRIWRLSTDLMLVAQFDGIISAVNPAWT
QALGWSEEQLLDSQFLALVHPEDVDSTLAAMSGLENGRTIPHFKNRYRHQDGSYRTISWTAVPDKQFIHAVGRDIQAEEE
ANEALRLSQDALHQAQKLEAIGQLTGGVAHDFNNLLTVIRSCSDLLKSPNLEEHRRVKYVEAISSTVDRAARLTGQLLAF
ARRQALQPEVFDVCKSVARIGEMMDTLTGARIQVSIDLPAEPCFIFADGSQFDTALVNMVVNARDAMSGAGRLVIKVECA
ACPADDQPASLGEGDYIEGDYVRVSLTDTGAGIAKEKLGLIFEPFYTTKSVGQGTGLGLSQVFGFAKQSGGEVLVESELG
KGSRFTLCLPSAQNHEVVQEDHRHTLTPLPGLCVLMVEDNQDIGTYTRPMLEQLGFQVLWVSSAAEALKELSGNPENFHV
VFSDIAMPGMSGLELYAEIEARYPWMPVVLTTGYSTEFATIAQDETQRFDLLQKPYSRDDLAAILHKAVSRSGEH

Specific function: Photosensitive kinase and response regulator that is involved in increased bacterial virulence upon exposure to light [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI48994928, Length=526, Percent_Identity=26.0456273764259, Blast_Score=117, Evalue=3e-27,
Organism=Escherichia coli, GI1790436, Length=249, Percent_Identity=30.5220883534137, Blast_Score=101, Evalue=2e-22,
Organism=Escherichia coli, GI1788549, Length=373, Percent_Identity=26.8096514745308, Blast_Score=94, Evalue=4e-20,
Organism=Escherichia coli, GI87081816, Length=271, Percent_Identity=28.0442804428044, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI1788713, Length=341, Percent_Identity=21.9941348973607, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1790299, Length=122, Percent_Identity=31.9672131147541, Blast_Score=67, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR011006
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS; PF00072 Response_reg [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 87888; Mature: 87757

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50112 PAS ; PS50113 PAC ; PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRFIRETDWSTSALGPKQAWPAALLSSMNLMLSCPDSMYLLWGPDYTLFFNDAYAQVLP
CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCEEEEECCCEEEEECCHHHHHHH
IAAAQAQGQPIASVWGDAWEAVRPLAEQALAGQNRRSDNIQRTIVRNGKPEQTWWSLSYS
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCEEEEECC
PLYGDSGLIEGVFCRVNETTLQVMAEARQSENEAFTDRVLSSINDCIKVLDLDSRLTFMS
CCCCCCCCCCEEEEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH
EGGQRIMEVSDFNAIRGCPWPDFWQEQGNLDAIAAVEAARAGQNASFTGSARTLAGTTKW
CCCCCEEEECCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCEEECCCEE
WHVQVSPIFGKDGKPEKILCVSRDMTQLRDAEEALLSLNETLEQRVVERTQDRDRIWRLS
EEEEEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEC
TDLMLVAQFDGIISAVNPAWTQALGWSEEQLLDSQFLALVHPEDVDSTLAAMSGLENGRT
CCEEEEEEHHHHHHHCCHHHHHHCCCCHHHHHHHHHEEEECCCCHHHHHHHHHCCCCCCC
IPHFKNRYRHQDGSYRTISWTAVPDKQFIHAVGRDIQAEEEANEALRLSQDALHQAQKLE
CCHHHHHHCCCCCCEEEEEEEECCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
AIGQLTGGVAHDFNNLLTVIRSCSDLLKSPNLEEHRRVKYVEAISSTVDRAARLTGQLLA
HHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FARRQALQPEVFDVCKSVARIGEMMDTLTGARIQVSIDLPAEPCFIFADGSQFDTALVNM
HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEECCCCHHHHHHHH
VVNARDAMSGAGRLVIKVECAACPADDQPASLGEGDYIEGDYVRVSLTDTGAGIAKEKLG
HHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHCC
LIFEPFYTTKSVGQGTGLGLSQVFGFAKQSGGEVLVESELGKGSRFTLCLPSAQNHEVVQ
CEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCEEEEECCCCCCCHHHH
EDHRHTLTPLPGLCVLMVEDNQDIGTYTRPMLEQLGFQVLWVSSAAEALKELSGNPENFH
HCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCCEEE
VVFSDIAMPGMSGLELYAEIEARYPWMPVVLTTGYSTEFATIAQDETQRFDLLQKPYSRD
EEEECCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEHHCCHHHHHHHHHCCCCCH
DLAAILHKAVSRSGEH
HHHHHHHHHHHCCCCC
>Mature Secondary Structure 
GRFIRETDWSTSALGPKQAWPAALLSSMNLMLSCPDSMYLLWGPDYTLFFNDAYAQVLP
CCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCEEEEECCCEEEEECCHHHHHHH
IAAAQAQGQPIASVWGDAWEAVRPLAEQALAGQNRRSDNIQRTIVRNGKPEQTWWSLSYS
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCEEEEECC
PLYGDSGLIEGVFCRVNETTLQVMAEARQSENEAFTDRVLSSINDCIKVLDLDSRLTFMS
CCCCCCCCCCEEEEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH
EGGQRIMEVSDFNAIRGCPWPDFWQEQGNLDAIAAVEAARAGQNASFTGSARTLAGTTKW
CCCCCEEEECCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCEEECCCEE
WHVQVSPIFGKDGKPEKILCVSRDMTQLRDAEEALLSLNETLEQRVVERTQDRDRIWRLS
EEEEEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEC
TDLMLVAQFDGIISAVNPAWTQALGWSEEQLLDSQFLALVHPEDVDSTLAAMSGLENGRT
CCEEEEEEHHHHHHHCCHHHHHHCCCCHHHHHHHHHEEEECCCCHHHHHHHHHCCCCCCC
IPHFKNRYRHQDGSYRTISWTAVPDKQFIHAVGRDIQAEEEANEALRLSQDALHQAQKLE
CCHHHHHHCCCCCCEEEEEEEECCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
AIGQLTGGVAHDFNNLLTVIRSCSDLLKSPNLEEHRRVKYVEAISSTVDRAARLTGQLLA
HHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FARRQALQPEVFDVCKSVARIGEMMDTLTGARIQVSIDLPAEPCFIFADGSQFDTALVNM
HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEECCCCHHHHHHHH
VVNARDAMSGAGRLVIKVECAACPADDQPASLGEGDYIEGDYVRVSLTDTGAGIAKEKLG
HHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHCC
LIFEPFYTTKSVGQGTGLGLSQVFGFAKQSGGEVLVESELGKGSRFTLCLPSAQNHEVVQ
CEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCEEEEECCCCCCCHHHH
EDHRHTLTPLPGLCVLMVEDNQDIGTYTRPMLEQLGFQVLWVSSAAEALKELSGNPENFH
HCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCCEEE
VVFSDIAMPGMSGLELYAEIEARYPWMPVVLTTGYSTEFATIAQDETQRFDLLQKPYSRD
EEEECCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEHHCCHHHHHHHHHCCCCCH
DLAAILHKAVSRSGEH
HHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA