Click here to switch to the map view.

The map label for this gene is cmoB [H]

Identifier: 66047174

GI number: 66047174

Start: 4695279

End: 4696238

Strand: Direct

Name: cmoB [H]

Synonym: Psyr_3947

Alternate gene names: 66047174

Gene position: 4695279-4696238 (Clockwise)

Preceding gene: 66047173

Following gene: 66047186

Centisome position: 77.05

GC content: 62.4

Gene sequence:

>960_bases
ATGATTGATCTCGCTCCCCTCGTCCGTCGTCTGGCGGGAACCCCTCTGGCCGACTGGGCCAATGGCCTGCAAGCCCAGCT
CGACACCAAGATGGCCAAGGGTCACGGTGACCTGCAGCGCTGGCAAAGTGCGCTGGATGCCTTGCCCGACCTGCAGCCCG
AGCGAATCGACCTGATCGACAGTTTTACCCTGGAAGCCGAGTGCAACGGCGAGACCCGCACCGTGCTGCGCAAGGCATTG
CTTGGCCTGTCACCGTGGCGCAAGGGGCCGTTCAATGTGTTCGGCGTGCATATCGACACCGAATGGCGCTCGGACTGGAA
GTGGTCGCGGGTTTCGCCACACCTGGACCTGAAGGGCAAACGCGTTCTGGATGTCGGCTGCGGTAACGGTTATTACCAGT
GGCGCATGCTTGGCGCCGGGGCCGACAGCGTGATCGGGGTCGACCCCAACTGGCTGTTCTTCTGCCAGTTCCAGGCCATG
CAGCGCTACCTGCCTGACCTGCCCGCCTGGCATCTGCCGTTCGCCCTGGAAGACTTGCCCGCCAATCTGGAAGGCTTCGA
CACAGTCTTCTCGATGGGCGTGCTGTATCACCGCAAATCCCCCATCGACCACCTGCTGGCCTTGAAAGACTGTCTGGTAA
AAGGCGGCGAGCTGGTGATGGAAACCCTGGTCGTGCCGGGTGATGTTCATCAAGTGCTGGTCCCGGAAGATCGTTATGCG
CAGATGCGCAACGTCTGGTTCCTGCCTTCAGTGCCTGCTCTGGAATTGTGGATGCGCCGTGCCGGCTTCACCGATGTGCG
TTGCGTCGACGTCAGCCACACGACGGTCGACGAACAACGCAGCACCGAGTGGATGCGCTTTCAGTCCCTGAGCGACTACC
TGGACCCCACCGATCACAGCAAGACAGTCGAGGGCCTGCCCGCCCCCATGCGTGCGGTGATCGTGGGGCGCAAGCCCTGA

Upstream 100 bases:

>100_bases
ACAGCCTCGAAGAACACCGCCAACGCCTGCTTGCCGCAGGTTTTTCCAAGGTGGTGCCCTGGTTTCAATGCCTTAACTTC
ACCTCGTTGATTGCCCTGCC

Downstream 100 bases:

>100_bases
GGGACGAGTTATCTGGCTGCCGCCACGATCAACGCCTTCATCTCGGCCACTGCCGCCTTGAAGCCGACGAACAGAGCATG
AGCCACCAGCGCGTGGCCGA

Product: methyltransferase, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MIDLAPLVRRLAGTPLADWANGLQAQLDTKMAKGHGDLQRWQSALDALPDLQPERIDLIDSFTLEAECNGETRTVLRKAL
LGLSPWRKGPFNVFGVHIDTEWRSDWKWSRVSPHLDLKGKRVLDVGCGNGYYQWRMLGAGADSVIGVDPNWLFFCQFQAM
QRYLPDLPAWHLPFALEDLPANLEGFDTVFSMGVLYHRKSPIDHLLALKDCLVKGGELVMETLVVPGDVHQVLVPEDRYA
QMRNVWFLPSVPALELWMRRAGFTDVRCVDVSHTTVDEQRSTEWMRFQSLSDYLDPTDHSKTVEGLPAPMRAVIVGRKP

Sequences:

>Translated_319_residues
MIDLAPLVRRLAGTPLADWANGLQAQLDTKMAKGHGDLQRWQSALDALPDLQPERIDLIDSFTLEAECNGETRTVLRKAL
LGLSPWRKGPFNVFGVHIDTEWRSDWKWSRVSPHLDLKGKRVLDVGCGNGYYQWRMLGAGADSVIGVDPNWLFFCQFQAM
QRYLPDLPAWHLPFALEDLPANLEGFDTVFSMGVLYHRKSPIDHLLALKDCLVKGGELVMETLVVPGDVHQVLVPEDRYA
QMRNVWFLPSVPALELWMRRAGFTDVRCVDVSHTTVDEQRSTEWMRFQSLSDYLDPTDHSKTVEGLPAPMRAVIVGRKP
>Mature_319_residues
MIDLAPLVRRLAGTPLADWANGLQAQLDTKMAKGHGDLQRWQSALDALPDLQPERIDLIDSFTLEAECNGETRTVLRKAL
LGLSPWRKGPFNVFGVHIDTEWRSDWKWSRVSPHLDLKGKRVLDVGCGNGYYQWRMLGAGADSVIGVDPNWLFFCQFQAM
QRYLPDLPAWHLPFALEDLPANLEGFDTVFSMGVLYHRKSPIDHLLALKDCLVKGGELVMETLVVPGDVHQVLVPEDRYA
QMRNVWFLPSVPALELWMRRAGFTDVRCVDVSHTTVDEQRSTEWMRFQSLSDYLDPTDHSKTVEGLPAPMRAVIVGRKP

Specific function: Catalyzes the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at position 34 in tRNA [H]

COG id: COG0500

COG function: function code QR; SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. CmoB family [H]

Homologues:

Organism=Escherichia coli, GI1788178, Length=325, Percent_Identity=53.8461538461538, Blast_Score=347, Evalue=8e-97,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010017 [H]

Pfam domain/function: PF08003 Methyltransf_9 [H]

EC number: NA

Molecular weight: Translated: 36159; Mature: 36159

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDLAPLVRRLAGTPLADWANGLQAQLDTKMAKGHGDLQRWQSALDALPDLQPERIDLID
CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHH
SFTLEAECNGETRTVLRKALLGLSPWRKGPFNVFGVHIDTEWRSDWKWSRVSPHLDLKGK
CEEEEEECCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCC
RVLDVGCGNGYYQWRMLGAGADSVIGVDPNWLFFCQFQAMQRYLPDLPAWHLPFALEDLP
EEEEECCCCCEEEEEEEECCCCCEEECCCCEEEEEEHHHHHHHCCCCCCCCCCCHHHHCC
ANLEGFDTVFSMGVLYHRKSPIDHLLALKDCLVKGGELVMETLVVPGDVHQVLVPEDRYA
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCEEECCCHHHH
QMRNVWFLPSVPALELWMRRAGFTDVRCVDVSHTTVDEQRSTEWMRFQSLSDYLDPTDHS
HHHCEEECCCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
KTVEGLPAPMRAVIVGRKP
CCCCCCCCCCEEEEECCCC
>Mature Secondary Structure
MIDLAPLVRRLAGTPLADWANGLQAQLDTKMAKGHGDLQRWQSALDALPDLQPERIDLID
CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHH
SFTLEAECNGETRTVLRKALLGLSPWRKGPFNVFGVHIDTEWRSDWKWSRVSPHLDLKGK
CEEEEEECCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCC
RVLDVGCGNGYYQWRMLGAGADSVIGVDPNWLFFCQFQAMQRYLPDLPAWHLPFALEDLP
EEEEECCCCCEEEEEEEECCCCCEEECCCCEEEEEEHHHHHHHCCCCCCCCCCCHHHHCC
ANLEGFDTVFSMGVLYHRKSPIDHLLALKDCLVKGGELVMETLVVPGDVHQVLVPEDRYA
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCEEECCCHHHH
QMRNVWFLPSVPALELWMRRAGFTDVRCVDVSHTTVDEQRSTEWMRFQSLSDYLDPTDHS
HHHCEEECCCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
KTVEGLPAPMRAVIVGRKP
CCCCCCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA