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The map label for this gene is motY [H]

Identifier: 66047120

GI number: 66047120

Start: 4634811

End: 4635713

Strand: Reverse

Name: motY [H]

Synonym: Psyr_3893

Alternate gene names: 66047120

Gene position: 4635713-4634811 (Counterclockwise)

Preceding gene: 66047125

Following gene: 66047119

Centisome position: 76.07

GC content: 61.24

Gene sequence:

>903_bases
GTGCGCCAGCGATATTTAGCCCTGCTCAGCATGTTTGCCAGCCTCCCGGCGATGGCTATCAGTTTCCAGACGCGTCTGGA
GAGCATTGAGTGGAAGGTCGAAGGCGATCAGTTCGAGTGCCGCCTGACTCAACCGATCACCGACTTCGGGGCCGGTGAGT
TCGTGCGCCGAGCGGGCGAGCAGGCGACGTTTCGCCTCAAGGCTTCATACAACATGCTCGGTAACGGCTCTGCGACGCTG
CTGGCCGCTGCGGCACCGTGGCAACCGGGTCGCGGCGATATCAACCTGGGATCAGTGCGCGTCAGCAATGGCGATATTCC
CTTCAATACCTCCCAGGCCCAGGCCGGCCGCCTGATCAGTGGTCTGATGGACGGGCGCAGTCCGCTGATTCGCCATTACA
CCCGGGATGGCGGCCAGATGGAGGTACGTCTGCTGCCGGTCAAGTTCAGCAAGGCATTCAGCGATTACCAGGCATGCACT
GCCAAGCTGCTGCCGATGAACTTCGATCAGATCAAACAGGCTGAAGTGGGTTTCCCTGGCGGCGGTATCGAACTGGATGC
CCGTGCCAAGGCGCGCCTGGATAACATGGTCGCCTACTTGAAGGCTGACCCGACCGTGAACCGTATCGAACTGGACGGTC
ATTCGGATAACAGCGGCAATCGCCTGACCAACCGTGACCTGTCTCGCCGTCGCGCGCTGGCGGTCATGGATTATTTCAAG
GCTCAGGGCGTTCCCGAGCAGCAAATCACCCTGCGCTTTCACGGCGAACGTTACCCATTGGCGCCCAACACCAACGAAGC
CAATCGTGCGCGCAACCGTCGGGTGAATGTGCACCTCGAGCGTGTTGCGCCCGATGAGCGCCCGGTGCCGGTTGCGTCTG
CCAGCGCAGCGCACACCTCTTAA

Upstream 100 bases:

>100_bases
TCTCTCAGGCATCCGCTATCAAGTTTTGCATGAAGTTACCGATAGCTCCCTTGTCAGTCGGTAATTTTCTGTTTCGCGTT
CATTTCCAGTGGAGCCTCCC

Downstream 100 bases:

>100_bases
AGCCTGTAAAAAGCATCTGTCAGACGTCGCCTTGTCGTCACAAGCTGTCGCGCCCCTGTAAATTTGCTGGTTTGAACGGT
AGAATCAGCGGTTTTCCGTA

Product: OmpA/MotB

Products: NA

Alternate protein names: Polar flagellum motor protein [H]

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MRQRYLALLSMFASLPAMAISFQTRLESIEWKVEGDQFECRLTQPITDFGAGEFVRRAGEQATFRLKASYNMLGNGSATL
LAAAAPWQPGRGDINLGSVRVSNGDIPFNTSQAQAGRLISGLMDGRSPLIRHYTRDGGQMEVRLLPVKFSKAFSDYQACT
AKLLPMNFDQIKQAEVGFPGGGIELDARAKARLDNMVAYLKADPTVNRIELDGHSDNSGNRLTNRDLSRRRALAVMDYFK
AQGVPEQQITLRFHGERYPLAPNTNEANRARNRRVNVHLERVAPDERPVPVASASAAHTS

Sequences:

>Translated_300_residues
MRQRYLALLSMFASLPAMAISFQTRLESIEWKVEGDQFECRLTQPITDFGAGEFVRRAGEQATFRLKASYNMLGNGSATL
LAAAAPWQPGRGDINLGSVRVSNGDIPFNTSQAQAGRLISGLMDGRSPLIRHYTRDGGQMEVRLLPVKFSKAFSDYQACT
AKLLPMNFDQIKQAEVGFPGGGIELDARAKARLDNMVAYLKADPTVNRIELDGHSDNSGNRLTNRDLSRRRALAVMDYFK
AQGVPEQQITLRFHGERYPLAPNTNEANRARNRRVNVHLERVAPDERPVPVASASAAHTS
>Mature_300_residues
MRQRYLALLSMFASLPAMAISFQTRLESIEWKVEGDQFECRLTQPITDFGAGEFVRRAGEQATFRLKASYNMLGNGSATL
LAAAAPWQPGRGDINLGSVRVSNGDIPFNTSQAQAGRLISGLMDGRSPLIRHYTRDGGQMEVRLLPVKFSKAFSDYQACT
AKLLPMNFDQIKQAEVGFPGGGIELDARAKARLDNMVAYLKADPTVNRIELDGHSDNSGNRLTNRDLSRRRALAVMDYFK
AQGVPEQQITLRFHGERYPLAPNTNEANRARNRRVNVHLERVAPDERPVPVASASAAHTS

Specific function: Plays the role of a stator in the sodium flagellar motor, stabilizing the force-generating unit through direct interaction with the cell wall. Involved in adherence and invasion of fish cell line [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 33206; Mature: 33206

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQRYLALLSMFASLPAMAISFQTRLESIEWKVEGDQFECRLTQPITDFGAGEFVRRAGE
CCHHHHHHHHHHHHCHHHHHHHHHHHHHEEEEEECCEEEEEECCCCCCCCCHHHHHHCCC
QATFRLKASYNMLGNGSATLLAAAAPWQPGRGDINLGSVRVSNGDIPFNTSQAQAGRLIS
CEEEEEEEECEECCCCCEEEEEEECCCCCCCCCEEECEEEEECCCCCCCCCHHHHHHHHH
GLMDGRSPLIRHYTRDGGQMEVRLLPVKFSKAFSDYQACTAKLLPMNFDQIKQAEVGFPG
HHHCCCCHHHHHHHCCCCEEEEEEEEEEHHHHHHHHHHHHHEECCCCHHHHHHHHCCCCC
GGIELDARAKARLDNMVAYLKADPTVNRIELDGHSDNSGNRLTNRDLSRRRALAVMDYFK
CCEEECCHHHHHHHHEEEEEECCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
AQGVPEQQITLRFHGERYPLAPNTNEANRARNRRVNVHLERVAPDERPVPVASASAAHTS
HCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRQRYLALLSMFASLPAMAISFQTRLESIEWKVEGDQFECRLTQPITDFGAGEFVRRAGE
CCHHHHHHHHHHHHCHHHHHHHHHHHHHEEEEEECCEEEEEECCCCCCCCCHHHHHHCCC
QATFRLKASYNMLGNGSATLLAAAAPWQPGRGDINLGSVRVSNGDIPFNTSQAQAGRLIS
CEEEEEEEECEECCCCCEEEEEEECCCCCCCCCEEECEEEEECCCCCCCCCHHHHHHHHH
GLMDGRSPLIRHYTRDGGQMEVRLLPVKFSKAFSDYQACTAKLLPMNFDQIKQAEVGFPG
HHHCCCCHHHHHHHCCCCEEEEEEEEEEHHHHHHHHHHHHHEECCCCHHHHHHHHCCCCC
GGIELDARAKARLDNMVAYLKADPTVNRIELDGHSDNSGNRLTNRDLSRRRALAVMDYFK
CCEEECCHHHHHHHHEEEEEECCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
AQGVPEQQITLRFHGERYPLAPNTNEANRARNRRVNVHLERVAPDERPVPVASASAAHTS
HCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA