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The map label for this gene is rnfB [H]

Identifier: 66047114

GI number: 66047114

Start: 4628708

End: 4629583

Strand: Direct

Name: rnfB [H]

Synonym: Psyr_3887

Alternate gene names: 66047114

Gene position: 4628708-4629583 (Clockwise)

Preceding gene: 66047113

Following gene: 66047115

Centisome position: 75.96

GC content: 62.33

Gene sequence:

>876_bases
ATGACTGAATTGATTCGCCTGCTTCCCGACGTGGACCTCATCCGCAGTATCGACGCCCTCCTGCCGCAGACTCAGTGCGG
CAAGTGCGGCCATCCCGGCTGCAAGCCTTACGCCGAAGGTATCGCTGGCGGTGAAGCCATCAACAAATGCCCACCGGGCG
GCGACGAAACGATAGTCCAGCTGGCCGAACTGCTGTCTGTTCCGGTCCTGACACTGGACCTGCAACGCGGCACTGCACCT
GCGCAGGTTGCCTTCATTCGCGAAGCAGAGTGCATCGGTTGTACCAAATGCATTCAGGCCTGCCCCGTGGACGCCATTCT
CGGCGCAGCCAAGCTGATGCACACCGTGATTATCAATGAATGCACAGGCTGTGATCTGTGCATTGCTCCATGCCCGGTGG
ATTGCATTGAAATGCACCCGCTGCCACTGGCAACGGTCACGCCCGTCGTGGGTGGTCTGGCCCCTACTCCCGAGCTGCAG
GAGGCGCGGCAGCGCAAGCGTAGCCATGCGCGGATGCGTTTCGAAGCCCGAAATGCACGCTTGCACCGCGAGCAGCAAAC
GCGGCTGGCAGAGCGCCTTGCGCGGTCGCAGCGCGTTGAATCCGCTCGTGACGTGCTGCCTCGATCCGCCGCCGCCCTCG
CCCGGAACGACAAGCCTGCCGGTCCGGATGAAGCAGTGAAAAAAGCCCGGATTGCCTTGGCCATGAGCCGCGCGCAGCTC
AACAAGTCACTCAAGGCATTTGGGCACCCTCCCATTGCGGAGCAGGCCGCCAGGCTTGTGGAATTGCAGCGCGAATACGA
AGCTGCCGAGCAGGCACTTGCAGCGCTTCTACCGCTCCCCGCACAGGCTCATTCCGAGGAAAAGCTCCGCCCATGA

Upstream 100 bases:

>100_bases
AGGCGGATACCGGGCCTTTGCGCATTCGCAAGCTCCCTGATCTGTCCGATAATGCTGCTCTCTCGATAGACAGAACACCT
GTTGGTCACCTGGCAAGACC

Downstream 100 bases:

>100_bases
ATGCCGCAAAACGCCAGGAAATCTTTCGCAGGCTGCATGAGGACAATCCGGACCCAAAAACCGAATTGGCCTACACCACG
CCTTTCGAACTGTTGATAGC

Product: electron transport complex, RnfABCDGE type, B subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 290

Protein sequence:

>291_residues
MTELIRLLPDVDLIRSIDALLPQTQCGKCGHPGCKPYAEGIAGGEAINKCPPGGDETIVQLAELLSVPVLTLDLQRGTAP
AQVAFIREAECIGCTKCIQACPVDAILGAAKLMHTVIINECTGCDLCIAPCPVDCIEMHPLPLATVTPVVGGLAPTPELQ
EARQRKRSHARMRFEARNARLHREQQTRLAERLARSQRVESARDVLPRSAAALARNDKPAGPDEAVKKARIALAMSRAQL
NKSLKAFGHPPIAEQAARLVELQREYEAAEQALAALLPLPAQAHSEEKLRP

Sequences:

>Translated_291_residues
MTELIRLLPDVDLIRSIDALLPQTQCGKCGHPGCKPYAEGIAGGEAINKCPPGGDETIVQLAELLSVPVLTLDLQRGTAP
AQVAFIREAECIGCTKCIQACPVDAILGAAKLMHTVIINECTGCDLCIAPCPVDCIEMHPLPLATVTPVVGGLAPTPELQ
EARQRKRSHARMRFEARNARLHREQQTRLAERLARSQRVESARDVLPRSAAALARNDKPAGPDEAVKKARIALAMSRAQL
NKSLKAFGHPPIAEQAARLVELQREYEAAEQALAALLPLPAQAHSEEKLRP
>Mature_290_residues
TELIRLLPDVDLIRSIDALLPQTQCGKCGHPGCKPYAEGIAGGEAINKCPPGGDETIVQLAELLSVPVLTLDLQRGTAPA
QVAFIREAECIGCTKCIQACPVDAILGAAKLMHTVIINECTGCDLCIAPCPVDCIEMHPLPLATVTPVVGGLAPTPELQE
ARQRKRSHARMRFEARNARLHREQQTRLAERLARSQRVESARDVLPRSAAALARNDKPAGPDEAVKKARIALAMSRAQLN
KSLKAFGHPPIAEQAARLVELQREYEAAEQALAALLPLPAQAHSEEKLRP

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=135, Percent_Identity=54.8148148148148, Blast_Score=152, Evalue=2e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 31399; Mature: 31268

Theoretical pI: Translated: 7.80; Mature: 7.80

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
4.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTELIRLLPDVDLIRSIDALLPQTQCGKCGHPGCKPYAEGIAGGEAINKCPPGGDETIVQ
CCHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCHHHHCCCCCCHHHHHH
LAELLSVPVLTLDLQRGTAPAQVAFIREAECIGCTKCIQACPVDAILGAAKLMHTVIINE
HHHHHHCCHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
CTGCDLCIAPCPVDCIEMHPLPLATVTPVVGGLAPTPELQEARQRKRSHARMRFEARNAR
CCCCCEEECCCCCHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LHREQQTRLAERLARSQRVESARDVLPRSAAALARNDKPAGPDEAVKKARIALAMSRAQL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
NKSLKAFGHPPIAEQAARLVELQREYEAAEQALAALLPLPAQAHSEEKLRP
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
TELIRLLPDVDLIRSIDALLPQTQCGKCGHPGCKPYAEGIAGGEAINKCPPGGDETIVQ
CHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCHHHHCCCCCCHHHHHH
LAELLSVPVLTLDLQRGTAPAQVAFIREAECIGCTKCIQACPVDAILGAAKLMHTVIINE
HHHHHHCCHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
CTGCDLCIAPCPVDCIEMHPLPLATVTPVVGGLAPTPELQEARQRKRSHARMRFEARNAR
CCCCCEEECCCCCHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LHREQQTRLAERLARSQRVESARDVLPRSAAALARNDKPAGPDEAVKKARIALAMSRAQL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
NKSLKAFGHPPIAEQAARLVELQREYEAAEQALAALLPLPAQAHSEEKLRP
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA