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The map label for this gene is yhaJ [H]

Identifier: 66047052

GI number: 66047052

Start: 4553184

End: 4554107

Strand: Direct

Name: yhaJ [H]

Synonym: Psyr_3825

Alternate gene names: 66047052

Gene position: 4553184-4554107 (Clockwise)

Preceding gene: 66047050

Following gene: 66047053

Centisome position: 74.72

GC content: 65.48

Gene sequence:

>924_bases
ATGAAAGCGCCCCGCGTGACTCTCGACCAGTGGCGCACATTGCAGGCCGTGGTCGATCACGGTGGTTTTGCTCAGGCCGC
CGAAGCGTTGCATCGCTCGCAATCATCGGTGAGTTACACCGTGGCGCGCATGCAGGAACAGCTCGGCGTGCCGTTATTGC
GTATCGACGGGCGCAAGGCGGTGCTGACCGAAGCCGGTGGCGTACTGCTGCGCCGTTCGCGGCAGTTGGTCAAGCAGGCC
AGCCAGCTGGAAGACCTCGCGCACCATATGGAACAGGGCTGGGAAGCGGAAGTGCGCCTGGTGATCGACGCGGCGTACCC
TTCGGCACGTCTGGTCAAGGCGCTGACCGCGTTCATGCCGCAGAGCCGCGGCTGCCGGGTGCGACTGCGTGAAGAAGTGC
TCTCCGGCGTCGAAGAAGTCTTGCTCGAAGGCGTGGCGGACCTGGCCATCAGCGGCTACAGCATTGCCGGTCATCTGGGC
ACCGAGATGAGCTCGGTCGAGTTCGTCGCCGTCGCGCACCCGGACCACGCCCTGCATCAGGCCAATCGCGAGCTGACCTT
TCAGGACCTGGAAAGCCAGTTGCAGGTGGTCATCCGTGACTCCGGCAGGCAGCAACCCAGGGACTTCGGCTGGCTGGGCG
CGGAACAGCGCTGGACCGTCGGCAGCCTCGGCACCGCCGCGACCTTCGTCAGCAACGGCCTGGGCTTCGCCTGGCTGCCG
CGGCACATGATCGAGCGCGAACTGCGCGAAGGCTTGCTCAAGCCCCTGCGCCTGGACAAGGGCGGTAGCCGTAACCCGAC
CTTCTATCTTTACTCCAGCAAGGACCGGCCGCTGGGCCCGGCCACGCAGATCCTGATCGACCTGATCCGCAGCTTTGACA
CGACACCGCTCACCGCTGCACTCGGCACGCCGCAAAATGCCTGA

Upstream 100 bases:

>100_bases
CATGACCAGCAGCGCACAACACAGTCGATTCATTCGGCAATCTCCGAGTCGGGATTGTCAGAGTAGAACAACAAGCCCGT
ATTTAAAGAGGAATTACAGC

Downstream 100 bases:

>100_bases
CCGGCGCAGGCACTTGGCGCTCTTCGCTCAGTCAGGGCTGCCTGCGGCACTTCAATCACACGCGGCTGGAATTCATCGCC
AGCAACGCAGTCTGAAAATC

Product: regulatory protein, LysR:LysR, substrate-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MKAPRVTLDQWRTLQAVVDHGGFAQAAEALHRSQSSVSYTVARMQEQLGVPLLRIDGRKAVLTEAGGVLLRRSRQLVKQA
SQLEDLAHHMEQGWEAEVRLVIDAAYPSARLVKALTAFMPQSRGCRVRLREEVLSGVEEVLLEGVADLAISGYSIAGHLG
TEMSSVEFVAVAHPDHALHQANRELTFQDLESQLQVVIRDSGRQQPRDFGWLGAEQRWTVGSLGTAATFVSNGLGFAWLP
RHMIERELREGLLKPLRLDKGGSRNPTFYLYSSKDRPLGPATQILIDLIRSFDTTPLTAALGTPQNA

Sequences:

>Translated_307_residues
MKAPRVTLDQWRTLQAVVDHGGFAQAAEALHRSQSSVSYTVARMQEQLGVPLLRIDGRKAVLTEAGGVLLRRSRQLVKQA
SQLEDLAHHMEQGWEAEVRLVIDAAYPSARLVKALTAFMPQSRGCRVRLREEVLSGVEEVLLEGVADLAISGYSIAGHLG
TEMSSVEFVAVAHPDHALHQANRELTFQDLESQLQVVIRDSGRQQPRDFGWLGAEQRWTVGSLGTAATFVSNGLGFAWLP
RHMIERELREGLLKPLRLDKGGSRNPTFYLYSSKDRPLGPATQILIDLIRSFDTTPLTAALGTPQNA
>Mature_307_residues
MKAPRVTLDQWRTLQAVVDHGGFAQAAEALHRSQSSVSYTVARMQEQLGVPLLRIDGRKAVLTEAGGVLLRRSRQLVKQA
SQLEDLAHHMEQGWEAEVRLVIDAAYPSARLVKALTAFMPQSRGCRVRLREEVLSGVEEVLLEGVADLAISGYSIAGHLG
TEMSSVEFVAVAHPDHALHQANRELTFQDLESQLQVVIRDSGRQQPRDFGWLGAEQRWTVGSLGTAATFVSNGLGFAWLP
RHMIERELREGLLKPLRLDKGGSRNPTFYLYSSKDRPLGPATQILIDLIRSFDTTPLTAALGTPQNA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789492, Length=254, Percent_Identity=28.3464566929134, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1787949, Length=286, Percent_Identity=25.8741258741259, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87082024, Length=257, Percent_Identity=28.4046692607004, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1786508, Length=242, Percent_Identity=26.0330578512397, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1786713, Length=247, Percent_Identity=26.3157894736842, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33875; Mature: 33875

Theoretical pI: Translated: 7.86; Mature: 7.86

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAPRVTLDQWRTLQAVVDHGGFAQAAEALHRSQSSVSYTVARMQEQLGVPLLRIDGRKA
CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEE
VLTEAGGVLLRRSRQLVKQASQLEDLAHHMEQGWEAEVRLVIDAAYPSARLVKALTAFMP
EHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHCC
QSRGCRVRLREEVLSGVEEVLLEGVADLAISGYSIAGHLGTEMSSVEFVAVAHPDHALHQ
CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHCCCCCCEEEEEEECCCHHHHH
ANRELTFQDLESQLQVVIRDSGRQQPRDFGWLGAEQRWTVGSLGTAATFVSNGLGFAWLP
HCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHH
RHMIERELREGLLKPLRLDKGGSRNPTFYLYSSKDRPLGPATQILIDLIRSFDTTPLTAA
HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEE
LGTPQNA
CCCCCCC
>Mature Secondary Structure
MKAPRVTLDQWRTLQAVVDHGGFAQAAEALHRSQSSVSYTVARMQEQLGVPLLRIDGRKA
CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEE
VLTEAGGVLLRRSRQLVKQASQLEDLAHHMEQGWEAEVRLVIDAAYPSARLVKALTAFMP
EHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHCC
QSRGCRVRLREEVLSGVEEVLLEGVADLAISGYSIAGHLGTEMSSVEFVAVAHPDHALHQ
CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHCCCCCCEEEEEEECCCHHHHH
ANRELTFQDLESQLQVVIRDSGRQQPRDFGWLGAEQRWTVGSLGTAATFVSNGLGFAWLP
HCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHH
RHMIERELREGLLKPLRLDKGGSRNPTFYLYSSKDRPLGPATQILIDLIRSFDTTPLTAA
HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEE
LGTPQNA
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]