| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is ephD [H]
Identifier: 66046981
GI number: 66046981
Start: 4470616
End: 4471500
Strand: Reverse
Name: ephD [H]
Synonym: Psyr_3753
Alternate gene names: 66046981
Gene position: 4471500-4470616 (Counterclockwise)
Preceding gene: 66046982
Following gene: 66046980
Centisome position: 73.38
GC content: 60.45
Gene sequence:
>885_bases ATGGTGGGTTTGTGGTGCGTCCACTGTGATTACACTCAGGCAACTCCTGCACATCACAAGGCACTCGCTATGCAAAACCG CATCATGATTACTGGCGCCGGCTCAGGTCTGGGTCGTGAAATTGCACTGCGCTGGGCGCGCGAAGGGTGGCGGCTGGCAC TCTCGGACATCAACGATGCCGGCTTGCAGGAGACCCTTGCGCAAGTACGCAAGGCGGGTGGTGACGGTTTCGTGCAGCGT TGCGACGTTCGCGATTACAGCCAGCTCACCGCGTTTGCCCAGGCGTGCGAACAGCGCTTTGGCGGCATCGACATCATCGT CAACAATGCGGGTGTGGCCTCGGGGGGCTTTTTCAACGAATTGTCGCTGGAGGACTGGGACTGGCAGATCGCGATCAACC TGATGGGGGTGGTCAAGGGCTGCAAGGCGTTCCTGCCTATGCTGCTGGCCAGCAAGGGCCGGATCATCAACATCGCCTCG ATGGCAGCGCTGATGCAGGCCCCGGCGATGAGCAATTACAACGTCGCCAAGGCCGGGGTCGTCGCGCTTTCCGAGAGCCT GCTGGTCGAACTGCATGACCAAGGGGTTGGTGTTCATGTGGTCTGCCCGTCGTTCTTTCAGACCAATCTGCTGGATTCCT TCCGCGGCCCCACGCCCGCGATGAAGGCGCAGATCGGCAGGTTGCTGGAGAAGTCGCCGATCACCGCCGGGGATATCGCC GACTGCATCTTCAGGCAGGTTGGCGAAGGCGAATTCATGATCCTGCCTCACGAAGAAGGCCGCATGGCCTGGGAAATGAA ACGCAAGCAGCCACAGGCGATGTATGACGAAATGACTGTCATGTGCGCCAAGATGCGCGCCAAGGCGCAGACGGGGCATG CCTGA
Upstream 100 bases:
>100_bases GCTGCTCAATGTGTCGGTGTATGGCCTGTTGTTGCTCCGTTATGTGGCCCGGTCCAGGCGTCCATAGGGCTGCGGTTTGT TCCAGGCATTCAGCGTCTTG
Downstream 100 bases:
>100_bases CTAACCCGGAAGCGCTGCGTCCTCTTGCGACGCAGAGCGTCGTGACCTGCATTCCCACGCTGGAGCGTGCGGAACGATAA TCGCGACTATCGTGCGACGC
Product: short chain dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 294; Mature: 294
Protein sequence:
>294_residues MVGLWCVHCDYTQATPAHHKALAMQNRIMITGAGSGLGREIALRWAREGWRLALSDINDAGLQETLAQVRKAGGDGFVQR CDVRDYSQLTAFAQACEQRFGGIDIIVNNAGVASGGFFNELSLEDWDWQIAINLMGVVKGCKAFLPMLLASKGRIINIAS MAALMQAPAMSNYNVAKAGVVALSESLLVELHDQGVGVHVVCPSFFQTNLLDSFRGPTPAMKAQIGRLLEKSPITAGDIA DCIFRQVGEGEFMILPHEEGRMAWEMKRKQPQAMYDEMTVMCAKMRAKAQTGHA
Sequences:
>Translated_294_residues MVGLWCVHCDYTQATPAHHKALAMQNRIMITGAGSGLGREIALRWAREGWRLALSDINDAGLQETLAQVRKAGGDGFVQR CDVRDYSQLTAFAQACEQRFGGIDIIVNNAGVASGGFFNELSLEDWDWQIAINLMGVVKGCKAFLPMLLASKGRIINIAS MAALMQAPAMSNYNVAKAGVVALSESLLVELHDQGVGVHVVCPSFFQTNLLDSFRGPTPAMKAQIGRLLEKSPITAGDIA DCIFRQVGEGEFMILPHEEGRMAWEMKRKQPQAMYDEMTVMCAKMRAKAQTGHA >Mature_294_residues MVGLWCVHCDYTQATPAHHKALAMQNRIMITGAGSGLGREIALRWAREGWRLALSDINDAGLQETLAQVRKAGGDGFVQR CDVRDYSQLTAFAQACEQRFGGIDIIVNNAGVASGGFFNELSLEDWDWQIAINLMGVVKGCKAFLPMLLASKGRIINIAS MAALMQAPAMSNYNVAKAGVVALSESLLVELHDQGVGVHVVCPSFFQTNLLDSFRGPTPAMKAQIGRLLEKSPITAGDIA DCIFRQVGEGEFMILPHEEGRMAWEMKRKQPQAMYDEMTVMCAKMRAKAQTGHA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI40807363, Length=199, Percent_Identity=32.1608040201005, Blast_Score=102, Evalue=6e-22, Organism=Homo sapiens, GI310128830, Length=206, Percent_Identity=30.0970873786408, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI310115468, Length=206, Percent_Identity=30.0970873786408, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI25282469, Length=217, Percent_Identity=33.1797235023041, Blast_Score=92, Evalue=5e-19, Organism=Homo sapiens, GI15277342, Length=207, Percent_Identity=33.3333333333333, Blast_Score=92, Evalue=8e-19, Organism=Homo sapiens, GI40254992, Length=202, Percent_Identity=29.2079207920792, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI142976729, Length=212, Percent_Identity=30.188679245283, Blast_Score=88, Evalue=8e-18, Organism=Homo sapiens, GI31542939, Length=198, Percent_Identity=34.3434343434343, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI20149619, Length=198, Percent_Identity=29.7979797979798, Blast_Score=83, Evalue=4e-16, Organism=Homo sapiens, GI44680136, Length=101, Percent_Identity=42.5742574257426, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI44680133, Length=101, Percent_Identity=42.5742574257426, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI17738292, Length=101, Percent_Identity=42.5742574257426, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI210032110, Length=197, Percent_Identity=28.4263959390863, Blast_Score=82, Evalue=8e-16, Organism=Homo sapiens, GI66933014, Length=183, Percent_Identity=32.7868852459016, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI4504505, Length=190, Percent_Identity=29.4736842105263, Blast_Score=78, Evalue=9e-15, Organism=Homo sapiens, GI7706318, Length=192, Percent_Identity=28.6458333333333, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI32483357, Length=192, Percent_Identity=26.5625, Blast_Score=75, Evalue=8e-14, Organism=Homo sapiens, GI5031737, Length=198, Percent_Identity=28.7878787878788, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI31543615, Length=187, Percent_Identity=31.5508021390374, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI4504503, Length=195, Percent_Identity=28.2051282051282, Blast_Score=73, Evalue=4e-13, Organism=Homo sapiens, GI4503817, Length=191, Percent_Identity=26.7015706806283, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI33667109, Length=197, Percent_Identity=28.4263959390863, Blast_Score=72, Evalue=8e-13, Organism=Homo sapiens, GI4758504, Length=199, Percent_Identity=28.643216080402, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI19743808, Length=217, Percent_Identity=28.110599078341, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI150247226, Length=185, Percent_Identity=29.7297297297297, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI224922801, Length=167, Percent_Identity=34.7305389221557, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI38348362, Length=177, Percent_Identity=28.2485875706215, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI40548397, Length=232, Percent_Identity=27.5862068965517, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI214010158, Length=232, Percent_Identity=27.5862068965517, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI214010156, Length=232, Percent_Identity=27.5862068965517, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI22758144, Length=232, Percent_Identity=27.5862068965517, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI40254986, Length=140, Percent_Identity=31.4285714285714, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI126723191, Length=184, Percent_Identity=28.804347826087, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI38424085, Length=176, Percent_Identity=28.4090909090909, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI50726952, Length=188, Percent_Identity=31.3829787234043, Blast_Score=65, Evalue=7e-11, Organism=Homo sapiens, GI22507405, Length=217, Percent_Identity=27.6497695852535, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI87082100, Length=195, Percent_Identity=36.9230769230769, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1787335, Length=183, Percent_Identity=31.6939890710383, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1787905, Length=207, Percent_Identity=29.4685990338164, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1789057, Length=237, Percent_Identity=27.8481012658228, Blast_Score=81, Evalue=1e-16, Organism=Escherichia coli, GI1790717, Length=195, Percent_Identity=26.1538461538462, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI2367175, Length=193, Percent_Identity=29.5336787564767, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1789208, Length=199, Percent_Identity=28.643216080402, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1787820, Length=181, Percent_Identity=31.4917127071823, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1788459, Length=191, Percent_Identity=26.7015706806283, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI87082160, Length=184, Percent_Identity=26.6304347826087, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1789378, Length=188, Percent_Identity=25, Blast_Score=65, Evalue=7e-12, Organism=Escherichia coli, GI1786701, Length=198, Percent_Identity=27.2727272727273, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1786812, Length=187, Percent_Identity=27.2727272727273, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI193203117, Length=246, Percent_Identity=30.8943089430894, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI193203115, Length=234, Percent_Identity=31.6239316239316, Blast_Score=114, Evalue=6e-26, Organism=Caenorhabditis elegans, GI17564282, Length=199, Percent_Identity=32.6633165829146, Blast_Score=112, Evalue=3e-25, Organism=Caenorhabditis elegans, GI71994604, Length=185, Percent_Identity=30.8108108108108, Blast_Score=104, Evalue=5e-23, Organism=Caenorhabditis elegans, GI17562910, Length=192, Percent_Identity=34.8958333333333, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17508895, Length=238, Percent_Identity=28.5714285714286, Blast_Score=98, Evalue=6e-21, Organism=Caenorhabditis elegans, GI71994600, Length=186, Percent_Identity=27.9569892473118, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17567345, Length=188, Percent_Identity=30.8510638297872, Blast_Score=92, Evalue=4e-19, Organism=Caenorhabditis elegans, GI32563809, Length=193, Percent_Identity=29.5336787564767, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17507613, Length=193, Percent_Identity=29.5336787564767, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17559104, Length=188, Percent_Identity=30.3191489361702, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17563726, Length=229, Percent_Identity=31.8777292576419, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17562904, Length=201, Percent_Identity=29.3532338308458, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17562990, Length=199, Percent_Identity=30.6532663316583, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17538486, Length=198, Percent_Identity=30.8080808080808, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17560220, Length=206, Percent_Identity=30.5825242718447, Blast_Score=82, Evalue=5e-16, Organism=Caenorhabditis elegans, GI193204405, Length=202, Percent_Identity=29.2079207920792, Blast_Score=81, Evalue=8e-16, Organism=Caenorhabditis elegans, GI17560150, Length=199, Percent_Identity=28.643216080402, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI115534660, Length=199, Percent_Identity=29.6482412060301, Blast_Score=79, Evalue=4e-15, Organism=Caenorhabditis elegans, GI25147288, Length=200, Percent_Identity=28, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17551412, Length=188, Percent_Identity=28.1914893617021, Blast_Score=78, Evalue=7e-15, Organism=Caenorhabditis elegans, GI72000259, Length=211, Percent_Identity=29.3838862559242, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17538480, Length=196, Percent_Identity=28.0612244897959, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI71982365, Length=187, Percent_Identity=28.8770053475936, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17531453, Length=194, Percent_Identity=27.319587628866, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17562906, Length=212, Percent_Identity=27.8301886792453, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17560332, Length=198, Percent_Identity=28.7878787878788, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17565030, Length=208, Percent_Identity=26.4423076923077, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17568967, Length=185, Percent_Identity=27.027027027027, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17557780, Length=194, Percent_Identity=26.8041237113402, Blast_Score=71, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17562908, Length=227, Percent_Identity=25.9911894273128, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17555706, Length=253, Percent_Identity=21.7391304347826, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17558628, Length=187, Percent_Identity=29.4117647058824, Blast_Score=67, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=193, Percent_Identity=29.0155440414508, Blast_Score=85, Evalue=2e-17, Organism=Saccharomyces cerevisiae, GI6323882, Length=228, Percent_Identity=29.3859649122807, Blast_Score=78, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6320089, Length=214, Percent_Identity=28.5046728971963, Blast_Score=71, Evalue=2e-13, Organism=Drosophila melanogaster, GI23397609, Length=190, Percent_Identity=35.7894736842105, Blast_Score=105, Evalue=3e-23, Organism=Drosophila melanogaster, GI21357041, Length=184, Percent_Identity=32.0652173913043, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI28571526, Length=184, Percent_Identity=30.9782608695652, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI24649181, Length=272, Percent_Identity=27.9411764705882, Blast_Score=92, Evalue=4e-19, Organism=Drosophila melanogaster, GI21355631, Length=172, Percent_Identity=33.1395348837209, Blast_Score=91, Evalue=8e-19, Organism=Drosophila melanogaster, GI24644339, Length=184, Percent_Identity=30.4347826086957, Blast_Score=91, Evalue=8e-19, Organism=Drosophila melanogaster, GI24581726, Length=201, Percent_Identity=31.3432835820896, Blast_Score=86, Evalue=4e-17, Organism=Drosophila melanogaster, GI18859837, Length=189, Percent_Identity=31.2169312169312, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI21357673, Length=205, Percent_Identity=29.7560975609756, Blast_Score=83, Evalue=3e-16, Organism=Drosophila melanogaster, GI24640492, Length=199, Percent_Identity=27.1356783919598, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI24639444, Length=189, Percent_Identity=28.042328042328, Blast_Score=78, Evalue=9e-15, Organism=Drosophila melanogaster, GI17737361, Length=197, Percent_Identity=30.4568527918782, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI281364892, Length=166, Percent_Identity=30.1204819277108, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI221510726, Length=191, Percent_Identity=32.4607329842932, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI24665264, Length=206, Percent_Identity=28.6407766990291, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI161076933, Length=202, Percent_Identity=27.7227722772277, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24584748, Length=202, Percent_Identity=27.7227722772277, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24644337, Length=167, Percent_Identity=29.940119760479, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24665243, Length=255, Percent_Identity=24.3137254901961, Blast_Score=66, Evalue=4e-11, Organism=Drosophila melanogaster, GI221331218, Length=255, Percent_Identity=23.921568627451, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000073 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00561 Abhydrolase_1; PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 32077; Mature: 32077
Theoretical pI: Translated: 7.12; Mature: 7.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 5.4 %Met (Translated Protein) 8.2 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 5.4 %Met (Mature Protein) 8.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVGLWCVHCDYTQATPAHHKALAMQNRIMITGAGSGLGREIALRWAREGWRLALSDINDA CCEEEEEECCCCCCCCHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCC GLQETLAQVRKAGGDGFVQRCDVRDYSQLTAFAQACEQRFGGIDIIVNNAGVASGGFFNE HHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCC LSLEDWDWQIAINLMGVVKGCKAFLPMLLASKGRIINIASMAALMQAPAMSNYNVAKAGV CCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCCCCHHHHHH VALSESLLVELHDQGVGVHVVCPSFFQTNLLDSFRGPTPAMKAQIGRLLEKSPITAGDIA HHHHHHHHEEECCCCCEEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHH DCIFRQVGEGEFMILPHEEGRMAWEMKRKQPQAMYDEMTVMCAKMRAKAQTGHA HHHHHHCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MVGLWCVHCDYTQATPAHHKALAMQNRIMITGAGSGLGREIALRWAREGWRLALSDINDA CCEEEEEECCCCCCCCHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCC GLQETLAQVRKAGGDGFVQRCDVRDYSQLTAFAQACEQRFGGIDIIVNNAGVASGGFFNE HHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCC LSLEDWDWQIAINLMGVVKGCKAFLPMLLASKGRIINIASMAALMQAPAMSNYNVAKAGV CCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCCCCHHHHHH VALSESLLVELHDQGVGVHVVCPSFFQTNLLDSFRGPTPAMKAQIGRLLEKSPITAGDIA HHHHHHHHEEECCCCCEEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHH DCIFRQVGEGEFMILPHEEGRMAWEMKRKQPQAMYDEMTVMCAKMRAKAQTGHA HHHHHHCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]