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The map label for this gene is yhfE [H]

Identifier: 66046977

GI number: 66046977

Start: 4468065

End: 4469261

Strand: Direct

Name: yhfE [H]

Synonym: Psyr_3749

Alternate gene names: 66046977

Gene position: 4468065-4469261 (Clockwise)

Preceding gene: 66046976

Following gene: 161486728

Centisome position: 73.32

GC content: 62.99

Gene sequence:

>1197_bases
ATGACCCCTGCAAATATCCCCGATCCGGATCTGAAATACCTGCAGAAAGTTCTGTTGGAAATGCTCGCGATCCCAAGCCC
TACCGGCTTCACCGACACTATTGTGCGTTACGTGGCCGAGCGTCTCGAAGAGCTGGGCATCCCGTTCGAACTGACCCGCC
GCGGCACGATCCGCGCCACGCTGAAGGGCAAGCAGAACAGCCCCGACCGCGCCGTATCGGCGCACCTGGACACCATCGGT
GCCAGCGTTCGGGAAGTTAAAGAAAACGGCCGCCTGTCACTGGCTGCGGTCGGCTGCTGGTCGAGCCGCTTTGCCGAAGG
CAGCCGGGTCAGCGTGTTCACCGACACCGGCGTGATCCGTGGCAGCGTTTTGCCGCTGATGGCTTCCGGTCACGCGTTCA
ACACCGCCGTGGATGAAATGCCGATCAGTTGGGACCACGTCGAGTTGCGCCTGGATGCCTATTGCACCACCCGCGCCGAC
TGCGAATCGCTGGGTATCGGCATCGGTGACTTCGTCGCCTTCGACCCGCTGCCGGAGTTCACCGAGAGCGGACACATCAG
TGCCCGCCACCTGGATGACAAGGCTGGTGTCGCGGCACTGCTCGCCGCCCTGAAATCCATTGTCGACAGCGGTGCCGAGC
CGTTGATCGACTGTCACCCGCTGTTCACCATCACCGAAGAAACCGGTACGGGCGCGGCTGGCGTGCTGCCTTGGGACGTG
AGCGAGTTCGTCGGCATCGACATCGCGCCGGTTGCGCCAGGTCAGCATTCCAGCGAACACGCCGTCAGCGTGGCGATGCA
GGACTCGGGCGGTCCTTACGACTACCACCTGTCCCGCCATCTGCTGCGGCTGGGTGTGGAAAACGAGTTGCCGGTGCGTC
GTGACCTGTTCCGCTATTACTACAGTGATGCGCACTCGGCCGTGACTTCGGGGCATGACATCCGCACCGCCCTGCTGGCC
TTCGGCTGTGACGCGACGCATGGCTACGAGCGCACGCATATCGACAGTCTGGCGGCGCTGAGCAAGTTGCTGGGTGCCTA
CATACTCAGCCCACCGGTATTCGCCAGCGATGCCAAACCGGCGCAGAGCTCGCTGGAGCGCTTCAGCCATCAGATCGAGC
ACGATGCGCAGATGGAATCCGATACCCGCGTGCCACCGGTCGACAGCCTGATCGGGCAGAATCGCGAAGAGAGCTGA

Upstream 100 bases:

>100_bases
AGCCTCCCTGTGCATATCTGATCGCAGCTGCGGGCACGGCTGCAAACGGCACATCCGCCTTTGCAGCCCGTGGCTTGCAA
CTGTTCCATAAGGAGCATCC

Downstream 100 bases:

>100_bases
GGCCCTGTGAATTGCGGTGCGTGGCACCGCAGTTCTATTATCGCCGCTCATCGACACGAGAACCGCCATGCTGATCCCCT
ACGACCAACTGGAACCTGAC

Product: peptidase M42

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 398; Mature: 397

Protein sequence:

>398_residues
MTPANIPDPDLKYLQKVLLEMLAIPSPTGFTDTIVRYVAERLEELGIPFELTRRGTIRATLKGKQNSPDRAVSAHLDTIG
ASVREVKENGRLSLAAVGCWSSRFAEGSRVSVFTDTGVIRGSVLPLMASGHAFNTAVDEMPISWDHVELRLDAYCTTRAD
CESLGIGIGDFVAFDPLPEFTESGHISARHLDDKAGVAALLAALKSIVDSGAEPLIDCHPLFTITEETGTGAAGVLPWDV
SEFVGIDIAPVAPGQHSSEHAVSVAMQDSGGPYDYHLSRHLLRLGVENELPVRRDLFRYYYSDAHSAVTSGHDIRTALLA
FGCDATHGYERTHIDSLAALSKLLGAYILSPPVFASDAKPAQSSLERFSHQIEHDAQMESDTRVPPVDSLIGQNREES

Sequences:

>Translated_398_residues
MTPANIPDPDLKYLQKVLLEMLAIPSPTGFTDTIVRYVAERLEELGIPFELTRRGTIRATLKGKQNSPDRAVSAHLDTIG
ASVREVKENGRLSLAAVGCWSSRFAEGSRVSVFTDTGVIRGSVLPLMASGHAFNTAVDEMPISWDHVELRLDAYCTTRAD
CESLGIGIGDFVAFDPLPEFTESGHISARHLDDKAGVAALLAALKSIVDSGAEPLIDCHPLFTITEETGTGAAGVLPWDV
SEFVGIDIAPVAPGQHSSEHAVSVAMQDSGGPYDYHLSRHLLRLGVENELPVRRDLFRYYYSDAHSAVTSGHDIRTALLA
FGCDATHGYERTHIDSLAALSKLLGAYILSPPVFASDAKPAQSSLERFSHQIEHDAQMESDTRVPPVDSLIGQNREES
>Mature_397_residues
TPANIPDPDLKYLQKVLLEMLAIPSPTGFTDTIVRYVAERLEELGIPFELTRRGTIRATLKGKQNSPDRAVSAHLDTIGA
SVREVKENGRLSLAAVGCWSSRFAEGSRVSVFTDTGVIRGSVLPLMASGHAFNTAVDEMPISWDHVELRLDAYCTTRADC
ESLGIGIGDFVAFDPLPEFTESGHISARHLDDKAGVAALLAALKSIVDSGAEPLIDCHPLFTITEETGTGAAGVLPWDVS
EFVGIDIAPVAPGQHSSEHAVSVAMQDSGGPYDYHLSRHLLRLGVENELPVRRDLFRYYYSDAHSAVTSGHDIRTALLAF
GCDATHGYERTHIDSLAALSKLLGAYILSPPVFASDAKPAQSSLERFSHQIEHDAQMESDTRVPPVDSLIGQNREES

Specific function: Unknown

COG id: COG1363

COG function: function code G; Cellulase M and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M42 family [H]

Homologues:

Organism=Escherichia coli, GI1790332, Length=190, Percent_Identity=26.8421052631579, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008007 [H]

Pfam domain/function: PF05343 Peptidase_M42 [H]

EC number: NA

Molecular weight: Translated: 43071; Mature: 42940

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS00290 IG_MHC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPANIPDPDLKYLQKVLLEMLAIPSPTGFTDTIVRYVAERLEELGIPFELTRRGTIRAT
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCEEEEE
LKGKQNSPDRAVSAHLDTIGASVREVKENGRLSLAAVGCWSSRFAEGSRVSVFTDTGVIR
ECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHCCCCCEEEEEECCCEEC
GSVLPLMASGHAFNTAVDEMPISWDHVELRLDAYCTTRADCESLGIGIGDFVAFDPLPEF
CCHHHHHCCCCCHHHHHHCCCCCCCEEEEEEEEEECCCCCHHHHCCCCHHHHHCCCCHHH
TESGHISARHLDDKAGVAALLAALKSIVDSGAEPLIDCHPLFTITEETGTGAAGVLPWDV
HCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCCEECCCCEEEEECCCCCCCCCCCCCH
SEFVGIDIAPVAPGQHSSEHAVSVAMQDSGGPYDYHLSRHLLRLGVENELPVRRDLFRYY
HHHCCCEEEECCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHH
YSDAHSAVTSGHDIRTALLAFGCDATHGYERTHIDSLAALSKLLGAYILSPPVFASDAKP
HHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
AQSSLERFSHQIEHDAQMESDTRVPPVDSLIGQNREES
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCC
>Mature Secondary Structure 
TPANIPDPDLKYLQKVLLEMLAIPSPTGFTDTIVRYVAERLEELGIPFELTRRGTIRAT
CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCEEEEE
LKGKQNSPDRAVSAHLDTIGASVREVKENGRLSLAAVGCWSSRFAEGSRVSVFTDTGVIR
ECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHCCCCCEEEEEECCCEEC
GSVLPLMASGHAFNTAVDEMPISWDHVELRLDAYCTTRADCESLGIGIGDFVAFDPLPEF
CCHHHHHCCCCCHHHHHHCCCCCCCEEEEEEEEEECCCCCHHHHCCCCHHHHHCCCCHHH
TESGHISARHLDDKAGVAALLAALKSIVDSGAEPLIDCHPLFTITEETGTGAAGVLPWDV
HCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCCEECCCCEEEEECCCCCCCCCCCCCH
SEFVGIDIAPVAPGQHSSEHAVSVAMQDSGGPYDYHLSRHLLRLGVENELPVRRDLFRYY
HHHCCCEEEECCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHH
YSDAHSAVTSGHDIRTALLAFGCDATHGYERTHIDSLAALSKLLGAYILSPPVFASDAKP
HHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
AQSSLERFSHQIEHDAQMESDTRVPPVDSLIGQNREES
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]