Definition Pseudomonas syringae pv. syringae B728a, complete genome.
Accession NC_007005
Length 6,093,698

Click here to switch to the map view.

The map label for this gene is ubiG

Identifier: 66046879

GI number: 66046879

Start: 4336233

End: 4336931

Strand: Direct

Name: ubiG

Synonym: Psyr_3650

Alternate gene names: 66046879

Gene position: 4336233-4336931 (Clockwise)

Preceding gene: 66046878

Following gene: 66046880

Centisome position: 71.16

GC content: 62.23

Gene sequence:

>699_bases
ATGAGCAACGTCGACCGCGCAGAAATCGCCAAATTCGAGGCCCTGGCCCATCGCTGGTGGGACCGCGAAAGCGAATTCAA
GCCGCTGCATGACATCAACCCGCTGCGCGTCAACTGGATCGACGAGCGCGTCGGTCTGGCGGGCAAGAAGGTGCTGGACG
TCGGTTGTGGCGGCGGCATCCTCAGCGAGGCCATGGCCCTGCGCGGCGCCACGGTGACCGGCATCGACATGGGCGAAGCG
CCGCTGGCAGTCGCACAGCTGCACCAGCTCGAATCGGGTGTCAGCGTCGAATACCGGCAGATCACTGCCGAGGACATGGC
CGAAGAAATGCCCGAGCAGTACGATGTGGTGACTTGCCTGGAAATGCTCGAGCACGTGCCGGACCCATCCTCGGTGATCC
GCGCCTGCTACCGCATGGTCAAGCCTGGCGGTCAGGTATTCTTCTCGACCATCAACCGTAATCCGAAAGCCTATCTGTTC
GCTGTGGTCGGCGCCGAATACATCCTCAACCTGCTGCCGCGCGGCACCCACGACTTCAAGAAATTCATCCGCCCTTCCGA
GCTGGGCGCCTGGAGCCGTGACGCCGGCCTGCAGGTCAAGGACGTCATCGGCCTGACCTACAACCCGCTGACCAAGCATT
ACAAGTTGACCTCCGATGTCGGCGTCAACTACATGATCCAGACCCTGCGGGAGGCATGA

Upstream 100 bases:

>100_bases
GGTAAAGCCGAATAATTCGATTCGGACCGAACACATGTCAGTCAGGCTTATCTATAAGCCTGACTGACGAAAAAGAATTT
TGAGTTCAAGAGGGACACCC

Downstream 100 bases:

>100_bases
CAGATGCGCCTGAGAGCGGTTTTATTCGACATGGACGGCACTCTGCTCGACACCGCACCGGACTTCATCGCCATTGCCCA
GGCGATGCTTGCCGATCGCA

Product: 3-demethylubiquinone-9 3-methyltransferase

Products: NA

Alternate protein names: 3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase; DHHB methyltransferase

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MSNVDRAEIAKFEALAHRWWDRESEFKPLHDINPLRVNWIDERVGLAGKKVLDVGCGGGILSEAMALRGATVTGIDMGEA
PLAVAQLHQLESGVSVEYRQITAEDMAEEMPEQYDVVTCLEMLEHVPDPSSVIRACYRMVKPGGQVFFSTINRNPKAYLF
AVVGAEYILNLLPRGTHDFKKFIRPSELGAWSRDAGLQVKDVIGLTYNPLTKHYKLTSDVGVNYMIQTLREA

Sequences:

>Translated_232_residues
MSNVDRAEIAKFEALAHRWWDRESEFKPLHDINPLRVNWIDERVGLAGKKVLDVGCGGGILSEAMALRGATVTGIDMGEA
PLAVAQLHQLESGVSVEYRQITAEDMAEEMPEQYDVVTCLEMLEHVPDPSSVIRACYRMVKPGGQVFFSTINRNPKAYLF
AVVGAEYILNLLPRGTHDFKKFIRPSELGAWSRDAGLQVKDVIGLTYNPLTKHYKLTSDVGVNYMIQTLREA
>Mature_231_residues
SNVDRAEIAKFEALAHRWWDRESEFKPLHDINPLRVNWIDERVGLAGKKVLDVGCGGGILSEAMALRGATVTGIDMGEAP
LAVAQLHQLESGVSVEYRQITAEDMAEEMPEQYDVVTCLEMLEHVPDPSSVIRACYRMVKPGGQVFFSTINRNPKAYLFA
VVGAEYILNLLPRGTHDFKKFIRPSELGAWSRDAGLQVKDVIGLTYNPLTKHYKLTSDVGVNYMIQTLREA

Specific function: Ubiquinone biosynthesis. [C]

COG id: COG2227

COG function: function code H; 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. UbiG/COQ3 family

Homologues:

Organism=Homo sapiens, GI118600965, Length=237, Percent_Identity=36.7088607594937, Blast_Score=180, Evalue=1e-45,
Organism=Escherichia coli, GI1788564, Length=227, Percent_Identity=64.7577092511013, Blast_Score=307, Evalue=4e-85,
Organism=Caenorhabditis elegans, GI115533050, Length=240, Percent_Identity=32.9166666666667, Blast_Score=128, Evalue=3e-30,
Organism=Saccharomyces cerevisiae, GI6324476, Length=286, Percent_Identity=30.4195804195804, Blast_Score=119, Evalue=5e-28,
Organism=Drosophila melanogaster, GI281365311, Length=246, Percent_Identity=32.1138211382114, Blast_Score=135, Evalue=2e-32,
Organism=Drosophila melanogaster, GI24585589, Length=267, Percent_Identity=29.9625468164794, Blast_Score=131, Evalue=4e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): UBIG_PSE14 (Q48FM4)

Other databases:

- EMBL:   CP000058
- RefSeq:   YP_275812.1
- ProteinModelPortal:   Q48FM4
- STRING:   Q48FM4
- GeneID:   3557257
- GenomeReviews:   CP000058_GR
- KEGG:   psp:PSPPH_3670
- eggNOG:   COG2227
- HOGENOM:   HBG738842
- OMA:   DHAEIAK
- PhylomeDB:   Q48FM4
- ProtClustDB:   PRK05134
- HAMAP:   MF_00472
- InterPro:   IPR013216
- InterPro:   IPR010233
- TIGRFAMs:   TIGR01983

Pfam domain/function: PF08241 Methyltransf_11

EC number: =2.1.1.64

Molecular weight: Translated: 25922; Mature: 25791

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNVDRAEIAKFEALAHRWWDRESEFKPLHDINPLRVNWIDERVGLAGKKVLDVGCGGGI
CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHCCCCCCEEEECCCCHH
LSEAMALRGATVTGIDMGEAPLAVAQLHQLESGVSVEYRQITAEDMAEEMPEQYDVVTCL
HHHHHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHH
EMLEHVPDPSSVIRACYRMVKPGGQVFFSTINRNPKAYLFAVVGAEYILNLLPRGTHDFK
HHHHHCCCHHHHHHHHHHHHCCCCCEEHHHHCCCCCEEEHHHHHHHHHHHHCCCCHHHHH
KFIRPSELGAWSRDAGLQVKDVIGLTYNPLTKHYKLTSDVGVNYMIQTLREA
HHCCHHHCCCCCCCCCCCHHHHHCCCCCCHHHHEECHHHCCHHHHHHHHHCC
>Mature Secondary Structure 
SNVDRAEIAKFEALAHRWWDRESEFKPLHDINPLRVNWIDERVGLAGKKVLDVGCGGGI
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHCCCCCCEEEECCCCHH
LSEAMALRGATVTGIDMGEAPLAVAQLHQLESGVSVEYRQITAEDMAEEMPEQYDVVTCL
HHHHHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHH
EMLEHVPDPSSVIRACYRMVKPGGQVFFSTINRNPKAYLFAVVGAEYILNLLPRGTHDFK
HHHHHCCCHHHHHHHHHHHHCCCCCEEHHHHCCCCCEEEHHHHHHHHHHHHCCCCHHHHH
KFIRPSELGAWSRDAGLQVKDVIGLTYNPLTKHYKLTSDVGVNYMIQTLREA
HHCCHHHCCCCCCCCCCCHHHHHCCCCCCHHHHEECHHHCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA