| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is galE [H]
Identifier: 66046867
GI number: 66046867
Start: 4320070
End: 4321050
Strand: Reverse
Name: galE [H]
Synonym: Psyr_3638
Alternate gene names: 66046867
Gene position: 4321050-4320070 (Counterclockwise)
Preceding gene: 66046868
Following gene: 66046866
Centisome position: 70.91
GC content: 58.0
Gene sequence:
>981_bases ATGAGCGGTGATGTTGCATTGGTTGCAATAACAGGTGCGACAGGTTTCGTGGGCAGTGCCGTGGTTCGTCGGCTGATCGA GCGCACAGGCTGTTCTGTGAGGGTTGCAGTCCGGGGCGCTTATGTCGTTTCCAGCCCGCGCATCGATGTTGTCAGTGCAC AATCACTGGCACCGGATAATCAATGGGCAAGCTTTGTAACCGGCGCGGATGTGGTGATTCATTGTGCTGCGCGAGTTCAT GTGCTCAATGAGACCGCCGACGCACCGGATCAGGAGTACTTTCGCGCCAATGTCACCGCAACCCTGAATCTGGCCGAGCA GGCCGCAGCGGCAGGCGTCAAGCGCTTCATCTTTATCAGTTCCATCAAGGCCAATGGCGAGTCTACGCTTGCGGGTGCGC CATTCACGGCCAGCGACCCGTGCACTCCGCTGGATGCCTACGGCGTGTCAAAACACAGGGCTGAGGAGGGCTTGCGCGAG TTGTCTGCCCGCACCGGTATGCAGGTGGTGATCATTCGACCGGTGCTGGTCTACGGTCCGGGGGTCAAGGCTAATTTCAG AAGCATGATGCGCTGGCTGGACAAAGGGCTGCCGTTGCCGCTCGGGTCCATCGATAATCGCAGAAGCCTGGTGGCGGTGG ATAATCTGGCAGATCTGGTGACGGTCTGTGTCGATCATCCTGCTGCGGCTGACCAGACGTTTCTGGTCAGTGACGGGGAC GATCTGTCCACGTCCAGGCTGCTGCGCGAAATGGGCAAGGCCTTGGGCAAACCTGCCCGGCTGCTGCCGGTGCCGGCCTC GCTGTTGAAAGCGGCTGCAGCACTGTTGGGCAAGAAAGCTTTTTCACAACGGCTGTGCAACTCGCTGCAGGTCGATATCA GTAAAACCTGTACGATGCTGGATTGGCATCCACCTGTGAGTATTGAACACGCCATGCAGGACACTGCTCGATATTATCTG GAACACGACAAGCATGATTGA
Upstream 100 bases:
>100_bases TGAGCGTCATCATGAAAGTTATAAAATGGATTGACGATATTTCAGTTGTCAAAAAGCGTTACTTGAGCAATATTTGGCCG ATTTGGAAGGGCGTGTTTGC
Downstream 100 bases:
>100_bases GTGGCTGTCGGTAATCGCTATTGCCTTTCTGTCTCTGATTCTAACGGCGTTGCTGCGCAAGTATGCGCTTGCCAAAAGTC TGATCGACATTCCAAACGCC
Product: UDP-glucose 4-epimerase, putative
Products: NA
Alternate protein names: Galactowaldenase; UDP-galactose 4-epimerase [H]
Number of amino acids: Translated: 326; Mature: 325
Protein sequence:
>326_residues MSGDVALVAITGATGFVGSAVVRRLIERTGCSVRVAVRGAYVVSSPRIDVVSAQSLAPDNQWASFVTGADVVIHCAARVH VLNETADAPDQEYFRANVTATLNLAEQAAAAGVKRFIFISSIKANGESTLAGAPFTASDPCTPLDAYGVSKHRAEEGLRE LSARTGMQVVIIRPVLVYGPGVKANFRSMMRWLDKGLPLPLGSIDNRRSLVAVDNLADLVTVCVDHPAAADQTFLVSDGD DLSTSRLLREMGKALGKPARLLPVPASLLKAAAALLGKKAFSQRLCNSLQVDISKTCTMLDWHPPVSIEHAMQDTARYYL EHDKHD
Sequences:
>Translated_326_residues MSGDVALVAITGATGFVGSAVVRRLIERTGCSVRVAVRGAYVVSSPRIDVVSAQSLAPDNQWASFVTGADVVIHCAARVH VLNETADAPDQEYFRANVTATLNLAEQAAAAGVKRFIFISSIKANGESTLAGAPFTASDPCTPLDAYGVSKHRAEEGLRE LSARTGMQVVIIRPVLVYGPGVKANFRSMMRWLDKGLPLPLGSIDNRRSLVAVDNLADLVTVCVDHPAAADQTFLVSDGD DLSTSRLLREMGKALGKPARLLPVPASLLKAAAALLGKKAFSQRLCNSLQVDISKTCTMLDWHPPVSIEHAMQDTARYYL EHDKHD >Mature_325_residues SGDVALVAITGATGFVGSAVVRRLIERTGCSVRVAVRGAYVVSSPRIDVVSAQSLAPDNQWASFVTGADVVIHCAARVHV LNETADAPDQEYFRANVTATLNLAEQAAAAGVKRFIFISSIKANGESTLAGAPFTASDPCTPLDAYGVSKHRAEEGLREL SARTGMQVVIIRPVLVYGPGVKANFRSMMRWLDKGLPLPLGSIDNRRSLVAVDNLADLVTVCVDHPAAADQTFLVSDGDD LSTSRLLREMGKALGKPARLLPVPASLLKAAAALLGKKAFSQRLCNSLQVDISKTCTMLDWHPPVSIEHAMQDTARYYLE HDKHD
Specific function: Unknown
COG id: COG0451
COG function: function code MG; Nucleoside-diphosphate-sugar epimerases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001509 - InterPro: IPR016040 [H]
Pfam domain/function: PF01370 Epimerase [H]
EC number: =5.1.3.2 [H]
Molecular weight: Translated: 34859; Mature: 34728
Theoretical pI: Translated: 7.87; Mature: 7.87
Prosite motif: PS00589 PTS_HPR_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGDVALVAITGATGFVGSAVVRRLIERTGCSVRVAVRGAYVVSSPRIDVVSAQSLAPDN CCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEECCCCCCCC QWASFVTGADVVIHCAARVHVLNETADAPDQEYFRANVTATLNLAEQAAAAGVKRFIFIS HHHHHHCCCHHHHHHHHHHEEECCCCCCCCHHHHEECCEEEEHHHHHHHHHHHHHEEEEE SIKANGESTLAGAPFTASDPCTPLDAYGVSKHRAEEGLRELSARTGMQVVIIRPVLVYGP EEECCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEEECC GVKANFRSMMRWLDKGLPLPLGSIDNRRSLVAVDNLADLVTVCVDHPAAADQTFLVSDGD CCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCEEEEECCC DLSTSRLLREMGKALGKPARLLPVPASLLKAAAALLGKKAFSQRLCNSLQVDISKTCTML CCHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCEEEE DWHPPVSIEHAMQDTARYYLEHDKHD ECCCCCCHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure SGDVALVAITGATGFVGSAVVRRLIERTGCSVRVAVRGAYVVSSPRIDVVSAQSLAPDN CCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEECCCCCCCC QWASFVTGADVVIHCAARVHVLNETADAPDQEYFRANVTATLNLAEQAAAAGVKRFIFIS HHHHHHCCCHHHHHHHHHHEEECCCCCCCCHHHHEECCEEEEHHHHHHHHHHHHHEEEEE SIKANGESTLAGAPFTASDPCTPLDAYGVSKHRAEEGLRELSARTGMQVVIIRPVLVYGP EEECCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEEECC GVKANFRSMMRWLDKGLPLPLGSIDNRRSLVAVDNLADLVTVCVDHPAAADQTFLVSDGD CCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCEEEEECCC DLSTSRLLREMGKALGKPARLLPVPASLLKAAAALLGKKAFSQRLCNSLQVDISKTCTML CCHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCEEEE DWHPPVSIEHAMQDTARYYLEHDKHD ECCCCCCHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8820651; 10521656 [H]