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The map label for this gene is ygiD [H]

Identifier: 66046847

GI number: 66046847

Start: 4302182

End: 4302949

Strand: Direct

Name: ygiD [H]

Synonym: Psyr_3618

Alternate gene names: 66046847

Gene position: 4302182-4302949 (Clockwise)

Preceding gene: 66046845

Following gene: 66046851

Centisome position: 70.6

GC content: 63.41

Gene sequence:

>768_bases
ATGTTCCCCAGCCTGTTTATTTCCCATGGCTCCCCCATGCTGGCGCTGGAACCCGGTGACAGCGGCCCGGCTCTGAAGCG
ACTGGCTGCCAGCCTGCCACGGCCTCGCGCCATCGTGATGGTCTCTGCCCACTGGGAAAGCCACGAACTGATCGTCAACG
GCAATCCACAGCCCGAGACATGGCATGACTTCGGCGGCTTTCCACCCGAACTGTTTGCAGTGCAGTACCCGGCGCAAGGG
CTGCCGGAACTGACCCGCACGGCGGTAGATCTGCTTGCCGCCAGCGACCTGCCTGCACGCATCGACAGCAGACGTCCCTT
CGACCACGGCGTCTGGGTGCCGTTGTCGCTGATGTACCCGAACGCCGACATTCCGGTGGTGCAGGTTTCACTGCCCAGCC
GCCAGGGACCTGAACTGCAGACCCGCGTGGGCCGGGCACTGGCCAGCTTGCGTGAACAGGGTGTACTGATCATCGGTTCA
GGCAGCATCACGCATAACCTGCGTGACCTTGACTGGAACGCCGGACCCGACAGCATCGAGCCTTGGGCTGCCGCGTTTCG
TGACTGGATGATCGATAAGCTGCAAAACGACGACGAAGCCGCACTGCACCACTACCGCAGCCTTGCTCCTCACGCAGCCC
GTGCGCACCCCAGTGACGAGCACCTGCTGCCGCTGTATTTTGCGCGCGGCGCTGGCGGTGTCTTCGGCATTGCCCATCAG
GGCTTCACCATGGGCGCGCTCGGGATGGATATCTATCGGTTCGGGTGA

Upstream 100 bases:

>100_bases
AAACCTCCTGAAAATTCGATAAAAAAGCGCCAGAACTTATATTAGATTTAGATCATAAAAATGACCGACTATGAGTCATC
TCTCTATTCTGGAGCTTTAA

Downstream 100 bases:

>100_bases
AGCCAATAGCGCCAACCTGCCTGAATCCAAAGCAAAAAAATCCCCGAACCAGTCGGGGATTTTTTATTGGCCGATCAGCT
CAAGAGCCGATCAGTCTTCG

Product: catalytic LigB subunit of aromatic ring-opening dioxygenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MFPSLFISHGSPMLALEPGDSGPALKRLAASLPRPRAIVMVSAHWESHELIVNGNPQPETWHDFGGFPPELFAVQYPAQG
LPELTRTAVDLLAASDLPARIDSRRPFDHGVWVPLSLMYPNADIPVVQVSLPSRQGPELQTRVGRALASLREQGVLIIGS
GSITHNLRDLDWNAGPDSIEPWAAAFRDWMIDKLQNDDEAALHHYRSLAPHAARAHPSDEHLLPLYFARGAGGVFGIAHQ
GFTMGALGMDIYRFG

Sequences:

>Translated_255_residues
MFPSLFISHGSPMLALEPGDSGPALKRLAASLPRPRAIVMVSAHWESHELIVNGNPQPETWHDFGGFPPELFAVQYPAQG
LPELTRTAVDLLAASDLPARIDSRRPFDHGVWVPLSLMYPNADIPVVQVSLPSRQGPELQTRVGRALASLREQGVLIIGS
GSITHNLRDLDWNAGPDSIEPWAAAFRDWMIDKLQNDDEAALHHYRSLAPHAARAHPSDEHLLPLYFARGAGGVFGIAHQ
GFTMGALGMDIYRFG
>Mature_255_residues
MFPSLFISHGSPMLALEPGDSGPALKRLAASLPRPRAIVMVSAHWESHELIVNGNPQPETWHDFGGFPPELFAVQYPAQG
LPELTRTAVDLLAASDLPARIDSRRPFDHGVWVPLSLMYPNADIPVVQVSLPSRQGPELQTRVGRALASLREQGVLIIGS
GSITHNLRDLDWNAGPDSIEPWAAAFRDWMIDKLQNDDEAALHHYRSLAPHAARAHPSDEHLLPLYFARGAGGVFGIAHQ
GFTMGALGMDIYRFG

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=260, Percent_Identity=38.8461538461538, Blast_Score=167, Evalue=6e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 27895; Mature: 27895

Theoretical pI: Translated: 6.22; Mature: 6.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFPSLFISHGSPMLALEPGDSGPALKRLAASLPRPRAIVMVSAHWESHELIVNGNPQPET
CCCCEEEECCCCEEEECCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCEEEECCCCCCCC
WHDFGGFPPELFAVQYPAQGLPELTRTAVDLLAASDLPARIDSRRPFDHGVWVPLSLMYP
CHHCCCCCHHHEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECC
NADIPVVQVSLPSRQGPELQTRVGRALASLREQGVLIIGSGSITHNLRDLDWNAGPDSIE
CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCC
PWAAAFRDWMIDKLQNDDEAALHHYRSLAPHAARAHPSDEHLLPLYFARGAGGVFGIAHQ
HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCCCCCCEEEEEEECCCCCEEEEECC
GFTMGALGMDIYRFG
CEEECHHCCEEEECC
>Mature Secondary Structure
MFPSLFISHGSPMLALEPGDSGPALKRLAASLPRPRAIVMVSAHWESHELIVNGNPQPET
CCCCEEEECCCCEEEECCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCEEEECCCCCCCC
WHDFGGFPPELFAVQYPAQGLPELTRTAVDLLAASDLPARIDSRRPFDHGVWVPLSLMYP
CHHCCCCCHHHEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECC
NADIPVVQVSLPSRQGPELQTRVGRALASLREQGVLIIGSGSITHNLRDLDWNAGPDSIE
CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCC
PWAAAFRDWMIDKLQNDDEAALHHYRSLAPHAARAHPSDEHLLPLYFARGAGGVFGIAHQ
HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCCCCCCEEEEEEECCCCCEEEEECC
GFTMGALGMDIYRFG
CEEECHHCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]