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The map label for this gene is yhjC [C]

Identifier: 66046836

GI number: 66046836

Start: 4290498

End: 4291406

Strand: Reverse

Name: yhjC [C]

Synonym: Psyr_3607

Alternate gene names: 66046836

Gene position: 4291406-4290498 (Counterclockwise)

Preceding gene: 66046839

Following gene: 66046835

Centisome position: 70.42

GC content: 62.16

Gene sequence:

>909_bases
ATGAATCCTTTCGAAGACATGCGGATGTTCTGCCAGGTAATGGAGTCCGGCAGCCTGACTGCCGCGTCCGACAAGCTGGG
CTTGTCCAAGCAGTTTGTCAGTCGTCGCCTGATGCAACTGGAGGAGCGCCTGGGCGTACGCCTGCTCAACCGCTCGACGC
GACGTCTGGATGTCACGCCGTTGGGGCAGAGTTACTACGAGTCGGCCCTGCGTCTGCTTGCCGAACTGGAACAGGTGGAG
CAGGGCATCACCGGGCAGAACAACGAACCGCGCGGCACCCTGCGCGTGAGTGCGCCGCTGTCGTTTGCCGTTACGCACCT
GGCGTGCCTGCTGCCGCTGTTTTTGCAGCGCTATCGCGATGTATCGGTTGAAGTGGACCTGAGTGATCGTCCGGTGGATG
TGATCAGTGAAGGCTACGACGTGGTGCTGCGTATCGGAGTGCTGGAAGACTCCAGTCTGATCGCCCGGCGCATTGCCTCG
ATCGACCGGGTGTACTGCGCCAGCCCGGCGTACCTGGCCGAGCGCGGCACACCGCAAAACCCCGAAGACCTGCACACCCA
TGATTGCCTGCCCTATGGCCACAGCCGTCAGGCGCAGTGGCGTTTTCAAGGGCAGGACAAGCCGTTGACCCTCAACGTCA
GCGGGCGTATGCGCGCCAATAATGGCGAGTTGCTGAGGGAATCGGCGATTGCCGGGCTGGGCATCACCTATTTGCCGACC
TTCATTGTCGGCGCAGCGTTGCGCGAGGGCAGCCTGGTCCGGGTGCTGGATGATCTGCGCCCCGAGCCATTGACGCTGTC
CGCGGTTTATCCACAGCACCGACAGGCATCGCGACCGGTGCAGGCATTCATCGAGTTCCTGCGCGAGCGTCTGGAATCAG
GTATCGAGCTGAATGATCGGCGGGCTTGA

Upstream 100 bases:

>100_bases
GTAGCTGAAATATGAATGACTGTCTCTCTGAGGTTGACAGTGCCCGGCACTGCGTTACGCTCTGTCGAACGCCCCTCAGC
GCTTGATCAGGTCGCAACAC

Downstream 100 bases:

>100_bases
AGCAGCCTGATAGCCGATCTATTGATAATTAATTTGCATATTAGGCTAGAGCAAAAATGAATTTAGCTAATTTTTGTTCG
GGTGGTAGGGTCGTTGCCGA

Product: regulatory protein, LysR:LysR, substrate-binding

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MNPFEDMRMFCQVMESGSLTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQSYYESALRLLAELEQVE
QGITGQNNEPRGTLRVSAPLSFAVTHLACLLPLFLQRYRDVSVEVDLSDRPVDVISEGYDVVLRIGVLEDSSLIARRIAS
IDRVYCASPAYLAERGTPQNPEDLHTHDCLPYGHSRQAQWRFQGQDKPLTLNVSGRMRANNGELLRESAIAGLGITYLPT
FIVGAALREGSLVRVLDDLRPEPLTLSAVYPQHRQASRPVQAFIEFLRERLESGIELNDRRA

Sequences:

>Translated_302_residues
MNPFEDMRMFCQVMESGSLTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQSYYESALRLLAELEQVE
QGITGQNNEPRGTLRVSAPLSFAVTHLACLLPLFLQRYRDVSVEVDLSDRPVDVISEGYDVVLRIGVLEDSSLIARRIAS
IDRVYCASPAYLAERGTPQNPEDLHTHDCLPYGHSRQAQWRFQGQDKPLTLNVSGRMRANNGELLRESAIAGLGITYLPT
FIVGAALREGSLVRVLDDLRPEPLTLSAVYPQHRQASRPVQAFIEFLRERLESGIELNDRRA
>Mature_302_residues
MNPFEDMRMFCQVMESGSLTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQSYYESALRLLAELEQVE
QGITGQNNEPRGTLRVSAPLSFAVTHLACLLPLFLQRYRDVSVEVDLSDRPVDVISEGYDVVLRIGVLEDSSLIARRIAS
IDRVYCASPAYLAERGTPQNPEDLHTHDCLPYGHSRQAQWRFQGQDKPLTLNVSGRMRANNGELLRESAIAGLGITYLPT
FIVGAALREGSLVRVLDDLRPEPLTLSAVYPQHRQASRPVQAFIEFLRERLESGIELNDRRA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=290, Percent_Identity=35.5172413793103, Blast_Score=176, Evalue=1e-45,
Organism=Escherichia coli, GI1786401, Length=292, Percent_Identity=33.9041095890411, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI1789639, Length=290, Percent_Identity=33.7931034482759, Blast_Score=157, Evalue=7e-40,
Organism=Escherichia coli, GI87081978, Length=293, Percent_Identity=32.0819112627986, Blast_Score=154, Evalue=7e-39,
Organism=Escherichia coli, GI1789440, Length=286, Percent_Identity=30.4195804195804, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1787128, Length=289, Percent_Identity=30.1038062283737, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1787589, Length=290, Percent_Identity=28.6206896551724, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI1790011, Length=298, Percent_Identity=24.496644295302, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789173, Length=257, Percent_Identity=25.2918287937743, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788481, Length=287, Percent_Identity=25.4355400696864, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788706, Length=296, Percent_Identity=25.6756756756757, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI157672245, Length=119, Percent_Identity=31.9327731092437, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1790262, Length=244, Percent_Identity=27.4590163934426, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI87082132, Length=301, Percent_Identity=23.5880398671096, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33977; Mature: 33977

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPFEDMRMFCQVMESGSLTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTP
CCCHHHHHHHHHHHHCCCCEECHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCC
LGQSYYESALRLLAELEQVEQGITGQNNEPRGTLRVSAPLSFAVTHLACLLPLFLQRYRD
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCC
VSVEVDLSDRPVDVISEGYDVVLRIGVLEDSSLIARRIASIDRVYCASPAYLAERGTPQN
CEEEEECCCCCHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCC
PEDLHTHDCLPYGHSRQAQWRFQGQDKPLTLNVSGRMRANNGELLRESAIAGLGITYLPT
CCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEECCCEECCCCHHHHHHHHHCCCHHHHHH
FIVGAALREGSLVRVLDDLRPEPLTLSAVYPQHRQASRPVQAFIEFLRERLESGIELNDR
HHHHHHHCCCCHHHHHHHCCCCCEEEEECCCCHHHCCCHHHHHHHHHHHHHHCCCCCCCC
RA
CC
>Mature Secondary Structure
MNPFEDMRMFCQVMESGSLTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTP
CCCHHHHHHHHHHHHCCCCEECHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCC
LGQSYYESALRLLAELEQVEQGITGQNNEPRGTLRVSAPLSFAVTHLACLLPLFLQRYRD
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCC
VSVEVDLSDRPVDVISEGYDVVLRIGVLEDSSLIARRIASIDRVYCASPAYLAERGTPQN
CEEEEECCCCCHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCC
PEDLHTHDCLPYGHSRQAQWRFQGQDKPLTLNVSGRMRANNGELLRESAIAGLGITYLPT
CCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEECCCEECCCCHHHHHHHHHCCCHHHHHH
FIVGAALREGSLVRVLDDLRPEPLTLSAVYPQHRQASRPVQAFIEFLRERLESGIELNDR
HHHHHHHCCCCHHHHHHHCCCCCEEEEECCCCHHHCCCHHHHHHHHHHHHHHCCCCCCCC
RA
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]