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The map label for this gene is ycdC [C]

Identifier: 66046576

GI number: 66046576

Start: 4003229

End: 4003846

Strand: Direct

Name: ycdC [C]

Synonym: Psyr_3347

Alternate gene names: 66046576

Gene position: 4003229-4003846 (Clockwise)

Preceding gene: 66046574

Following gene: 66046577

Centisome position: 65.69

GC content: 55.99

Gene sequence:

>618_bases
ATGAAGGTCCGTACTGAAGCTCGCCGCGAAGCCATCATTGATGCCGCAGCAAGTGTCTTCCTCGAAATGGGCTACGAGCG
TGCCTCGATGAATGAAGTCACCAAACGAATGGGTGGCTCCAAGGCAACGATCTATAGTTACTTTCCCTCCAAGGAAGAAC
TGTTCATCGCTGTGGTCAACAGGCTTGCAACTGCCCATCTGGCCGACGCGGTTTCAGAGCTGGCGATCCAGGATGACAAA
CCGATCGATTTGCGGGCCCTGTTCACGCGCTTCGGGGAACGCATGCTGATGGTGCTTATCAATGATGACAAGGCATTGGC
CGTGTATCGCATGGTAGTGGCCGAGTCCGGGCACTCGGACATCGGCATGATGTTCTACGAGTCCGGCCCCAGCCAGTGCC
TGCAGACAGTTACCTCGCTCATGACTCTGGCGATGCGAAAAGGCCAGTTGCGTGAAACCGATCCGCACATCGCCTCGTTG
CAGCTGACCTCGCTGTTGACTGCCGAGACCGACATTCGCCTTTACCAACAGGCGCCCATGCCGCTGAGCATCGAAGAAAT
TCGCGCCATGGTCGAACGCGCAGTGGATACCTTCATGTTGGGTATGGAGAAACGTTGA

Upstream 100 bases:

>100_bases
CAGTAAGCTCCACGGAGTCGACTGAAATCGTACCGAACGGTTCAGTTCCAGTCTAGGGAATTTTGTACACGATCTGCTCA
CTGGAGAATTGAGGATATGA

Downstream 100 bases:

>100_bases
GTCTGCATAACAGAACCAGCCGGTACTGATAAGAACCGTAATTGCAACCCTTCTGACACACCTTGTTACTCTTTTGCAGC
CAAGTTAATCCGAATGAGGG

Product: regulatory protein, TetR

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcription Regulator Protein; Regulatory Protein TetR; TetR-Family Transcriptional Regulator; Transcriptional Regulator TetR Family Protein; Transcription Regulator Protein TetR Family; Transcriptional Regulator Protein Tetr Family; TetR-Family Trancriptional Regulatory Protein; TetR-Like Virulence Regulator; Regulatory Protein Tetr; Transcriptional Regulator Tetr Family; TetR-Type Transcriptional Regulator; Bacterial Regulatory Protein TetR Family Protein; Transcriptional Regulator Protein; Transcription Regulator Protein Tetr Family; Transcriptional Regulator TetR; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MKVRTEARREAIIDAAASVFLEMGYERASMNEVTKRMGGSKATIYSYFPSKEELFIAVVNRLATAHLADAVSELAIQDDK
PIDLRALFTRFGERMLMVLINDDKALAVYRMVVAESGHSDIGMMFYESGPSQCLQTVTSLMTLAMRKGQLRETDPHIASL
QLTSLLTAETDIRLYQQAPMPLSIEEIRAMVERAVDTFMLGMEKR

Sequences:

>Translated_205_residues
MKVRTEARREAIIDAAASVFLEMGYERASMNEVTKRMGGSKATIYSYFPSKEELFIAVVNRLATAHLADAVSELAIQDDK
PIDLRALFTRFGERMLMVLINDDKALAVYRMVVAESGHSDIGMMFYESGPSQCLQTVTSLMTLAMRKGQLRETDPHIASL
QLTSLLTAETDIRLYQQAPMPLSIEEIRAMVERAVDTFMLGMEKR
>Mature_205_residues
MKVRTEARREAIIDAAASVFLEMGYERASMNEVTKRMGGSKATIYSYFPSKEELFIAVVNRLATAHLADAVSELAIQDDK
PIDLRALFTRFGERMLMVLINDDKALAVYRMVVAESGHSDIGMMFYESGPSQCLQTVTSLMTLAMRKGQLRETDPHIASL
QLTSLLTAETDIRLYQQAPMPLSIEEIRAMVERAVDTFMLGMEKR

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23022; Mature: 23022

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
7.3 %Met     (Translated Protein)
7.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
7.3 %Met     (Mature Protein)
7.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVRTEARREAIIDAAASVFLEMGYERASMNEVTKRMGGSKATIYSYFPSKEELFIAVVN
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHH
RLATAHLADAVSELAIQDDKPIDLRALFTRFGERMLMVLINDDKALAVYRMVVAESGHSD
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCCC
IGMMFYESGPSQCLQTVTSLMTLAMRKGQLRETDPHIASLQLTSLLTAETDIRLYQQAPM
EEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
PLSIEEIRAMVERAVDTFMLGMEKR
CCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKVRTEARREAIIDAAASVFLEMGYERASMNEVTKRMGGSKATIYSYFPSKEELFIAVVN
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHH
RLATAHLADAVSELAIQDDKPIDLRALFTRFGERMLMVLINDDKALAVYRMVVAESGHSD
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCCC
IGMMFYESGPSQCLQTVTSLMTLAMRKGQLRETDPHIASLQLTSLLTAETDIRLYQQAPM
EEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
PLSIEEIRAMVERAVDTFMLGMEKR
CCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA