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The map label for this gene is yddU [C]

Identifier: 66046558

GI number: 66046558

Start: 3981972

End: 3984170

Strand: Direct

Name: yddU [C]

Synonym: Psyr_3329

Alternate gene names: 66046558

Gene position: 3981972-3984170 (Clockwise)

Preceding gene: 66046556

Following gene: 66046560

Centisome position: 65.35

GC content: 56.57

Gene sequence:

>2199_bases
ATGAACACTTACCCGGTCGGCGATGATGACGAAGAACGTATTCGTATCTTGAATGCCTTTTCGTTGATGGATACCCCACC
TGAGCACGAATACGATCAGATCGTGCAAATGGCATCGCGGATTTTCGATTTGCCCATTGTGCTGATTTCTCTGGTTCATC
GCGACCGGCAATTCTTCAAGGCACGCGTTGGCCTCGATGTCTGCGAAACGGGCCGCGACGTCTCATTCTGCAATTTCGCG
CTCATGGGCCGTAACGTTTTTCTGGTACCGGATGCATTGCAGGATGAGCGGTTCAGCTCAAACGCCTTGGTAGTCGGCGC
TCCCCATATTCGCTTTTATGCCGGGGCGCCGCTGATAACCGCCAGCGGTCATGTGCTGGGCAGCCTGTGCCTGATCGACA
ATAAACCTCGGGAGACTTTCTCGGAGCGAGATCAGCTGGTTCTCCAGGACCTGGCGGTCATGATCATCGAGAGAATGGAG
TTGCGTCGGCTCACGCTCGAGAATGAAGACAGCCACACCCGCTTTATGAATATCACCTCGACTTCACCCGACGCGATCAT
CTGCTCGGACAGCAAAAACCGGATCATCTCATGGAACAACTCGGCCGAGATCATTTTCGGGCATCGATCCGAGGACGCCA
TGGGAAAGCCTCTCGACATCATTATTCCGCCCGAAATGCGCTCCAGGCACCATGCCGGTCTGTCGAGGGTGGCTGCAGGC
GGTCCGGCCTCCATCATCGGAAAGTCCATCAACCTGACGGCCGTCCATCGCGACGGTCATACCATCCCCATCGAGCTGTC
GCTCTCACAATGGACGTCTGCCGGCGAGCCACAATTCGGAGCGATCATTCGTGACATCACCCAGCGTGTCGAGGCGGACA
AATTACTCAAGCATGCGGCCGAATACGATCACCTGACCGGGCTTGCCAATCGATCGACGCTCAAGAGGCGGATCAAGGAG
GCGTGCGATGCTCAGCTTTCAGCAGCCATCCTGCTGATCGATCTGGACGGTTTCAAGGACGTCAACGACACGTTGGGCCA
CGCTGCGGGTGATTTTGTGCTCAAGGTGACCTCTCACCGTCTTCGCGAACACGTACCGGCCTGCCATATGGTCTCGCGTC
TGGGCGGCGATGAATTTGTCGTGTTCCTGTCCGAAACGGCAGACCCCGACAAGGCGATCAAGCTGGGCCTGGAGCTCATC
GCGGTCATCGAGGAGCCGATAGAATTTGAAGACAATTCAATCTATATCGGCGCCAGCATCGGCGTCTCCGTAAGGTGTGG
CTCCGACTACGATGAGGAGCAAATGCTCGGCAATGCGGATCTGGCGCTCTACCAGGCCAAGTCTGACGGCCGCTCCCTGG
TACGCACCTTCACCTCCGAGCATCGACAGACCGCGTCAAGAAGAGGCGCGCTCAGCTCATCGATGCGTCAGGCGTGGGCC
AACAAAGAGTTCGAGCTGTACTACCAACCTCAGGTACGACTTGCGGATGGTCGTATCACCGGAGCCGAAGCCCTTATACG
CTGGAACCATCCGACACTGGGTGTCGTGTCCCCTGCGGTTTTTCTACCGGCACTGGAAGCCAGTCTTCTTGCGGTGCCGG
TGGGCGAATGGATACTGCGTTCAGCCTGTGAGCAGGCAGCGCAATGGCGAAATACCGGCTGCGAGGAATTCCGCATCGGC
GTCAACCTGTTCGCCGCGCAGTTTCGCATGCGGGACTTTGCCGAAATGGTTGAAAGCGCGCTTGAAGACTTTTCCTTGCC
GGCACACTCACTCGAACTGGAAATCACGGAAAACATCATCCTGCGAAACGAACAGCGCATTATGGAACCGCTGCGCCACC
TTCGCTCATTGGGTGTGGGCATCGCATTCGATGATTTCGGTACCGGCTATGCGTCCCTGAGCCTGCTGAAAGACTATCCG
GTGACACGACTGAAGATCGACCGCTCATTCGTGAGTGGCGTGGAGCGCAGCAAAAAAGACGAAGTCATCGTCGAGGCCGT
CGTCAGGCTGGCAAACGGCTTCAATCTTCAGGTCACGGCAGAAGGCATAGAAACCCGTGAGCAGGAAAGTCTGATGCGCC
ATTATGTGTGCGACGAAGGCCAGGGCTATCTGTATGGTCGCCCCATGCCGGCGCATGAATTCACCAAGCGTTATATCTCT
TCTCACAATTGGCACGCTGACGTGCTCAAGCACAACTGA

Upstream 100 bases:

>100_bases
GCGCGTGTTGGCAGGGTGCTTTCAACGGTGCCGGCACAGCGGCGTTGCCCATCGATCGCTGCGTGTTTCAGGCGCGATCA
GCTTATAGCGATGGCCTCAA

Downstream 100 bases:

>100_bases
CTCAGAACGAGCCTGGGCAGGCTCGTCTGATCGCGCAATATGGACGCCTCTGGTGATCACTCAGTCCGGCGTCAGTACAC
CACGCTGGATCTGGTCGCGT

Product: PAS:GGDEF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 732; Mature: 732

Protein sequence:

>732_residues
MNTYPVGDDDEERIRILNAFSLMDTPPEHEYDQIVQMASRIFDLPIVLISLVHRDRQFFKARVGLDVCETGRDVSFCNFA
LMGRNVFLVPDALQDERFSSNALVVGAPHIRFYAGAPLITASGHVLGSLCLIDNKPRETFSERDQLVLQDLAVMIIERME
LRRLTLENEDSHTRFMNITSTSPDAIICSDSKNRIISWNNSAEIIFGHRSEDAMGKPLDIIIPPEMRSRHHAGLSRVAAG
GPASIIGKSINLTAVHRDGHTIPIELSLSQWTSAGEPQFGAIIRDITQRVEADKLLKHAAEYDHLTGLANRSTLKRRIKE
ACDAQLSAAILLIDLDGFKDVNDTLGHAAGDFVLKVTSHRLREHVPACHMVSRLGGDEFVVFLSETADPDKAIKLGLELI
AVIEEPIEFEDNSIYIGASIGVSVRCGSDYDEEQMLGNADLALYQAKSDGRSLVRTFTSEHRQTASRRGALSSSMRQAWA
NKEFELYYQPQVRLADGRITGAEALIRWNHPTLGVVSPAVFLPALEASLLAVPVGEWILRSACEQAAQWRNTGCEEFRIG
VNLFAAQFRMRDFAEMVESALEDFSLPAHSLELEITENIILRNEQRIMEPLRHLRSLGVGIAFDDFGTGYASLSLLKDYP
VTRLKIDRSFVSGVERSKKDEVIVEAVVRLANGFNLQVTAEGIETREQESLMRHYVCDEGQGYLYGRPMPAHEFTKRYIS
SHNWHADVLKHN

Sequences:

>Translated_732_residues
MNTYPVGDDDEERIRILNAFSLMDTPPEHEYDQIVQMASRIFDLPIVLISLVHRDRQFFKARVGLDVCETGRDVSFCNFA
LMGRNVFLVPDALQDERFSSNALVVGAPHIRFYAGAPLITASGHVLGSLCLIDNKPRETFSERDQLVLQDLAVMIIERME
LRRLTLENEDSHTRFMNITSTSPDAIICSDSKNRIISWNNSAEIIFGHRSEDAMGKPLDIIIPPEMRSRHHAGLSRVAAG
GPASIIGKSINLTAVHRDGHTIPIELSLSQWTSAGEPQFGAIIRDITQRVEADKLLKHAAEYDHLTGLANRSTLKRRIKE
ACDAQLSAAILLIDLDGFKDVNDTLGHAAGDFVLKVTSHRLREHVPACHMVSRLGGDEFVVFLSETADPDKAIKLGLELI
AVIEEPIEFEDNSIYIGASIGVSVRCGSDYDEEQMLGNADLALYQAKSDGRSLVRTFTSEHRQTASRRGALSSSMRQAWA
NKEFELYYQPQVRLADGRITGAEALIRWNHPTLGVVSPAVFLPALEASLLAVPVGEWILRSACEQAAQWRNTGCEEFRIG
VNLFAAQFRMRDFAEMVESALEDFSLPAHSLELEITENIILRNEQRIMEPLRHLRSLGVGIAFDDFGTGYASLSLLKDYP
VTRLKIDRSFVSGVERSKKDEVIVEAVVRLANGFNLQVTAEGIETREQESLMRHYVCDEGQGYLYGRPMPAHEFTKRYIS
SHNWHADVLKHN
>Mature_732_residues
MNTYPVGDDDEERIRILNAFSLMDTPPEHEYDQIVQMASRIFDLPIVLISLVHRDRQFFKARVGLDVCETGRDVSFCNFA
LMGRNVFLVPDALQDERFSSNALVVGAPHIRFYAGAPLITASGHVLGSLCLIDNKPRETFSERDQLVLQDLAVMIIERME
LRRLTLENEDSHTRFMNITSTSPDAIICSDSKNRIISWNNSAEIIFGHRSEDAMGKPLDIIIPPEMRSRHHAGLSRVAAG
GPASIIGKSINLTAVHRDGHTIPIELSLSQWTSAGEPQFGAIIRDITQRVEADKLLKHAAEYDHLTGLANRSTLKRRIKE
ACDAQLSAAILLIDLDGFKDVNDTLGHAAGDFVLKVTSHRLREHVPACHMVSRLGGDEFVVFLSETADPDKAIKLGLELI
AVIEEPIEFEDNSIYIGASIGVSVRCGSDYDEEQMLGNADLALYQAKSDGRSLVRTFTSEHRQTASRRGALSSSMRQAWA
NKEFELYYQPQVRLADGRITGAEALIRWNHPTLGVVSPAVFLPALEASLLAVPVGEWILRSACEQAAQWRNTGCEEFRIG
VNLFAAQFRMRDFAEMVESALEDFSLPAHSLELEITENIILRNEQRIMEPLRHLRSLGVGIAFDDFGTGYASLSLLKDYP
VTRLKIDRSFVSGVERSKKDEVIVEAVVRLANGFNLQVTAEGIETREQESLMRHYVCDEGQGYLYGRPMPAHEFTKRYIS
SHNWHADVLKHN

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=476, Percent_Identity=31.9327731092437, Blast_Score=256, Evalue=5e-69,
Organism=Escherichia coli, GI1787541, Length=564, Percent_Identity=28.0141843971631, Blast_Score=243, Evalue=4e-65,
Organism=Escherichia coli, GI226510982, Length=419, Percent_Identity=28.8782816229117, Blast_Score=188, Evalue=1e-48,
Organism=Escherichia coli, GI87081845, Length=247, Percent_Identity=32.7935222672065, Blast_Score=135, Evalue=1e-32,
Organism=Escherichia coli, GI87081980, Length=269, Percent_Identity=32.7137546468402, Blast_Score=135, Evalue=1e-32,
Organism=Escherichia coli, GI87081743, Length=243, Percent_Identity=32.0987654320988, Blast_Score=132, Evalue=8e-32,
Organism=Escherichia coli, GI1788502, Length=237, Percent_Identity=32.9113924050633, Blast_Score=131, Evalue=2e-31,
Organism=Escherichia coli, GI1786507, Length=244, Percent_Identity=32.7868852459016, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI1790496, Length=253, Percent_Identity=28.4584980237154, Blast_Score=120, Evalue=5e-28,
Organism=Escherichia coli, GI1788381, Length=503, Percent_Identity=23.6580516898608, Blast_Score=111, Evalue=2e-25,
Organism=Escherichia coli, GI1787055, Length=248, Percent_Identity=29.8387096774194, Blast_Score=107, Evalue=3e-24,
Organism=Escherichia coli, GI1788849, Length=249, Percent_Identity=30.9236947791165, Blast_Score=99, Evalue=9e-22,
Organism=Escherichia coli, GI87082096, Length=249, Percent_Identity=30.1204819277108, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI87081881, Length=291, Percent_Identity=29.2096219931272, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI145693134, Length=169, Percent_Identity=33.1360946745562, Blast_Score=81, Evalue=3e-16,
Organism=Escherichia coli, GI1787802, Length=182, Percent_Identity=31.3186813186813, Blast_Score=80, Evalue=6e-16,
Organism=Escherichia coli, GI87082007, Length=176, Percent_Identity=35.7954545454545, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1788956, Length=165, Percent_Identity=33.9393939393939, Blast_Score=76, Evalue=7e-15,
Organism=Escherichia coli, GI1786584, Length=240, Percent_Identity=26.6666666666667, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1787816, Length=207, Percent_Identity=29.4685990338164, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI1787056, Length=186, Percent_Identity=32.258064516129, Blast_Score=70, Evalue=6e-13,
Organism=Escherichia coli, GI1787410, Length=115, Percent_Identity=26.9565217391304, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1787262, Length=172, Percent_Identity=30.8139534883721, Blast_Score=67, Evalue=5e-12,
Organism=Escherichia coli, GI87081977, Length=171, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 81874; Mature: 81874

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: PS00018 EF_HAND_1 ; PS50112 PAS ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTYPVGDDDEERIRILNAFSLMDTPPEHEYDQIVQMASRIFDLPIVLISLVHRDRQFFK
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARVGLDVCETGRDVSFCNFALMGRNVFLVPDALQDERFSSNALVVGAPHIRFYAGAPLIT
HHCCCHHHHCCCCCCCEEEEEECCEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCEEE
ASGHVLGSLCLIDNKPRETFSERDQLVLQDLAVMIIERMELRRLTLENEDSHTRFMNITS
ECCHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEC
TSPDAIICSDSKNRIISWNNSAEIIFGHRSEDAMGKPLDIIIPPEMRSRHHAGLSRVAAG
CCCCEEEECCCCCCEEEECCCCEEEEECCCCCCCCCCEEEEECCCHHHHHHHCHHHHCCC
GPASIIGKSINLTAVHRDGHTIPIELSLSQWTSAGEPQFGAIIRDITQRVEADKLLKHAA
CCHHHHCCCEEEEEEECCCCEEEEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
EYDHLTGLANRSTLKRRIKEACDAQLSAAILLIDLDGFKDVNDTLGHAAGDFVLKVTSHR
HHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHCCCCCHHHHHHHHHH
LREHVPACHMVSRLGGDEFVVFLSETADPDKAIKLGLELIAVIEEPIEFEDNSIYIGASI
HHHHCCHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEC
GVSVRCGSDYDEEQMLGNADLALYQAKSDGRSLVRTFTSEHRQTASRRGALSSSMRQAWA
CEEEEECCCCCHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NKEFELYYQPQVRLADGRITGAEALIRWNHPTLGVVSPAVFLPALEASLLAVPVGEWILR
CCCEEEEECCCEEEECCEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHEECHHHHHHH
SACEQAAQWRNTGCEEFRIGVNLFAAQFRMRDFAEMVESALEDFSLPAHSLELEITENII
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEEECHHH
LRNEQRIMEPLRHLRSLGVGIAFDDFGTGYASLSLLKDYPVTRLKIDRSFVSGVERSKKD
CCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHCCCCEEEEECHHHHHHHHHCCCH
EVIVEAVVRLANGFNLQVTAEGIETREQESLMRHYVCDEGQGYLYGRPMPAHEFTKRYIS
HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHC
SHNWHADVLKHN
CCCCEEHHCCCC
>Mature Secondary Structure
MNTYPVGDDDEERIRILNAFSLMDTPPEHEYDQIVQMASRIFDLPIVLISLVHRDRQFFK
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARVGLDVCETGRDVSFCNFALMGRNVFLVPDALQDERFSSNALVVGAPHIRFYAGAPLIT
HHCCCHHHHCCCCCCCEEEEEECCEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCEEE
ASGHVLGSLCLIDNKPRETFSERDQLVLQDLAVMIIERMELRRLTLENEDSHTRFMNITS
ECCHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEC
TSPDAIICSDSKNRIISWNNSAEIIFGHRSEDAMGKPLDIIIPPEMRSRHHAGLSRVAAG
CCCCEEEECCCCCCEEEECCCCEEEEECCCCCCCCCCEEEEECCCHHHHHHHCHHHHCCC
GPASIIGKSINLTAVHRDGHTIPIELSLSQWTSAGEPQFGAIIRDITQRVEADKLLKHAA
CCHHHHCCCEEEEEEECCCCEEEEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
EYDHLTGLANRSTLKRRIKEACDAQLSAAILLIDLDGFKDVNDTLGHAAGDFVLKVTSHR
HHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHCCCCCHHHHHHHHHH
LREHVPACHMVSRLGGDEFVVFLSETADPDKAIKLGLELIAVIEEPIEFEDNSIYIGASI
HHHHCCHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEC
GVSVRCGSDYDEEQMLGNADLALYQAKSDGRSLVRTFTSEHRQTASRRGALSSSMRQAWA
CEEEEECCCCCHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NKEFELYYQPQVRLADGRITGAEALIRWNHPTLGVVSPAVFLPALEASLLAVPVGEWILR
CCCEEEEECCCEEEECCEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHEECHHHHHHH
SACEQAAQWRNTGCEEFRIGVNLFAAQFRMRDFAEMVESALEDFSLPAHSLELEITENII
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEEECHHH
LRNEQRIMEPLRHLRSLGVGIAFDDFGTGYASLSLLKDYPVTRLKIDRSFVSGVERSKKD
CCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHCCCCEEEEECHHHHHHHHHCCCH
EVIVEAVVRLANGFNLQVTAEGIETREQESLMRHYVCDEGQGYLYGRPMPAHEFTKRYIS
HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHC
SHNWHADVLKHN
CCCCEEHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]