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The map label for this gene is cph2 [H]

Identifier: 66046557

GI number: 66046557

Start: 3980034

End: 3981680

Strand: Reverse

Name: cph2 [H]

Synonym: Psyr_3328

Alternate gene names: 66046557

Gene position: 3981680-3980034 (Counterclockwise)

Preceding gene: 66046559

Following gene: 66046555

Centisome position: 65.34

GC content: 56.41

Gene sequence:

>1647_bases
ATGTTCAGGTTAAGTGTCGCAAAGGTATGGAAACTGCATAGAAGGTTTCACTGCCAATTTGATGACAATCCTATGAAGCC
GCTTTCCTTTATTTCGACGAGGCTTACACCTTCGGCGCTCAGCAAAGCGTTGATCGGCTTTATTGCCCTGGTCTGTCTAT
CGTTGATCATGGCCACCGCCTGGCAGATGAACCAGTCCAAGCTCGAGCGCTTGGCCACCGCCAGGATTGCGGTGTCCAAT
ATCGTGCTTGCTGCTGAGCAACAGGCTCAGGACACCCTGCAACAGGCTGACAACACGCTGCGAGACCTTGCCGAGCGTGT
TGAGCAGGATGGCGCCGCAGGCGAGCAGCAAAGCCGCTTGACCAGGCTGATGGCTCAAGACCTGGTGAACGTCAAAGGGC
TTCAGGGGCTGTTCATCTACGATGCTCAAGGCAACTGGGTCGCCAACTCCTTTGCCAAGGGCGTGCAGACCAGAAACAAC
GAAGACCGCGCCTACTTCATTTATCACCGCGACAACCCTGACCCGTCCATTCATATAGGTTCCATTGTCGAAAGCCGCAA
TACGGGGGACATGATCATCCCGGTCAGTCGGCGTATCAATGCGGCGGATGGCAGTTTTGCAGGCGTTGCCCTGGCCACGG
TGCCGGTGACTTATTTCCAGGCGTTTTTCCAGCGCATGGATGTAGACGACAAGGGCGTGATCTTCCTCGCTCTGAACAAT
GGCGACCTGCTGGCGCGTAGGCCCACATTAACCGCACTGATGACCACCAATGTGGCCAAGGGCGATATCTTCACTCGCTA
TCTGCCGTACAGCGACAGCGGCACCGCAGTGATCAACTCCGTGGTGGATGGGGTGGAAAGGATCTATGCCTATCGGCGTG
TGTCAGGATTGCCCATCGTCGCCGCTGCCGGTATCTCCAGTCAGCATGTGTTCGCGCCCTGGTGGGCCTATGCACAGCGC
TCCATGACCATCACCGGCATCATTATCCTGGCGCTGGTTTTTCTGGGCGTTCTGCTGTATCGGCAAATCCAGCAGTTGAT
CACTGCAGAGGGGGAACTGAACATTGCCAGGAACGACCTGGAGATTATCGCTCACACGGACAGCCTGACGCACCTGGCCA
ATCGACGCTGCTTCGATACGGCCTTGCAGCAGGAGTGGGGGCGGGCTAGCCGGAATGATGCAACCATCGCAATTATTTTG
CTGGATATCGACTGGTTCAAACAATACAACGACACCTACGGCCATCTGCAGGGTGACGACTGCCTGAGGCAAGTAGCGGG
GCTGATTGGCAACAGCCTCGACCGGTCTGGGGATATGGCTGCACGTTACGGCGGCGAAGAGTTTGTCATTCTGTTGCCTG
AAACCGACCTGGCAGGGGCGCTGAAACTTGCGGAAAAAATCAGATCATCCATTGAAGCCAGTTGTATAGAGCACTCGTCC
AGCCCGCTGGGCAGGCTGAGCATCAGCTCGGGCGTGGTGGCGATCAACGCAGCAGAGAAGAAGGATGCGCACACCGCTGC
GCTGAAGGAAGCGGATCGACTTCTTTACCTGGCCAAAACCAAAGGGCGTAACCGCGTCGAAGGTCGCTCGATTCAAGGGT
GGCAAGCAGATAGCCATTTTGCCAGGGTATCCAGCGCTTCCCCCTGA

Upstream 100 bases:

>100_bases
AGCTGTATCGTCAAAAAACCGGATACCTGTAACAACTTCTTGAGCAACTAGCCAGGCGGGCATCGATCCAACTAAGGCCA
GCGTTACCTGATGCAACAAG

Downstream 100 bases:

>100_bases
TTCAGTCTGACGGACGGCTACCGCCCATGCGCTCGCTGATCGCCACCGCCGTTTGCAAAAGCCGCGTGGCCGCCAGATCC
TGTGTCGCGTCGTGCAACAC

Product: GGDEF

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 548; Mature: 548

Protein sequence:

>548_residues
MFRLSVAKVWKLHRRFHCQFDDNPMKPLSFISTRLTPSALSKALIGFIALVCLSLIMATAWQMNQSKLERLATARIAVSN
IVLAAEQQAQDTLQQADNTLRDLAERVEQDGAAGEQQSRLTRLMAQDLVNVKGLQGLFIYDAQGNWVANSFAKGVQTRNN
EDRAYFIYHRDNPDPSIHIGSIVESRNTGDMIIPVSRRINAADGSFAGVALATVPVTYFQAFFQRMDVDDKGVIFLALNN
GDLLARRPTLTALMTTNVAKGDIFTRYLPYSDSGTAVINSVVDGVERIYAYRRVSGLPIVAAAGISSQHVFAPWWAYAQR
SMTITGIIILALVFLGVLLYRQIQQLITAEGELNIARNDLEIIAHTDSLTHLANRRCFDTALQQEWGRASRNDATIAIIL
LDIDWFKQYNDTYGHLQGDDCLRQVAGLIGNSLDRSGDMAARYGGEEFVILLPETDLAGALKLAEKIRSSIEASCIEHSS
SPLGRLSISSGVVAINAAEKKDAHTAALKEADRLLYLAKTKGRNRVEGRSIQGWQADSHFARVSSASP

Sequences:

>Translated_548_residues
MFRLSVAKVWKLHRRFHCQFDDNPMKPLSFISTRLTPSALSKALIGFIALVCLSLIMATAWQMNQSKLERLATARIAVSN
IVLAAEQQAQDTLQQADNTLRDLAERVEQDGAAGEQQSRLTRLMAQDLVNVKGLQGLFIYDAQGNWVANSFAKGVQTRNN
EDRAYFIYHRDNPDPSIHIGSIVESRNTGDMIIPVSRRINAADGSFAGVALATVPVTYFQAFFQRMDVDDKGVIFLALNN
GDLLARRPTLTALMTTNVAKGDIFTRYLPYSDSGTAVINSVVDGVERIYAYRRVSGLPIVAAAGISSQHVFAPWWAYAQR
SMTITGIIILALVFLGVLLYRQIQQLITAEGELNIARNDLEIIAHTDSLTHLANRRCFDTALQQEWGRASRNDATIAIIL
LDIDWFKQYNDTYGHLQGDDCLRQVAGLIGNSLDRSGDMAARYGGEEFVILLPETDLAGALKLAEKIRSSIEASCIEHSS
SPLGRLSISSGVVAINAAEKKDAHTAALKEADRLLYLAKTKGRNRVEGRSIQGWQADSHFARVSSASP
>Mature_548_residues
MFRLSVAKVWKLHRRFHCQFDDNPMKPLSFISTRLTPSALSKALIGFIALVCLSLIMATAWQMNQSKLERLATARIAVSN
IVLAAEQQAQDTLQQADNTLRDLAERVEQDGAAGEQQSRLTRLMAQDLVNVKGLQGLFIYDAQGNWVANSFAKGVQTRNN
EDRAYFIYHRDNPDPSIHIGSIVESRNTGDMIIPVSRRINAADGSFAGVALATVPVTYFQAFFQRMDVDDKGVIFLALNN
GDLLARRPTLTALMTTNVAKGDIFTRYLPYSDSGTAVINSVVDGVERIYAYRRVSGLPIVAAAGISSQHVFAPWWAYAQR
SMTITGIIILALVFLGVLLYRQIQQLITAEGELNIARNDLEIIAHTDSLTHLANRRCFDTALQQEWGRASRNDATIAIIL
LDIDWFKQYNDTYGHLQGDDCLRQVAGLIGNSLDRSGDMAARYGGEEFVILLPETDLAGALKLAEKIRSSIEASCIEHSS
SPLGRLSISSGVVAINAAEKKDAHTAALKEADRLLYLAKTKGRNRVEGRSIQGWQADSHFARVSSASP

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=187, Percent_Identity=35.8288770053476, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI87081881, Length=167, Percent_Identity=41.3173652694611, Blast_Score=102, Evalue=6e-23,
Organism=Escherichia coli, GI1787262, Length=172, Percent_Identity=37.2093023255814, Blast_Score=99, Evalue=8e-22,
Organism=Escherichia coli, GI87082007, Length=209, Percent_Identity=34.9282296650718, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1786584, Length=236, Percent_Identity=29.6610169491525, Blast_Score=92, Evalue=8e-20,
Organism=Escherichia coli, GI1788381, Length=183, Percent_Identity=34.4262295081967, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1787816, Length=167, Percent_Identity=34.1317365269461, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI87081974, Length=303, Percent_Identity=26.7326732673267, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1787802, Length=168, Percent_Identity=33.3333333333333, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1787541, Length=173, Percent_Identity=32.9479768786127, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1788085, Length=165, Percent_Identity=30.9090909090909, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI87081977, Length=161, Percent_Identity=32.9192546583851, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 60416; Mature: 60416

Theoretical pI: Translated: 7.95; Mature: 7.95

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRLSVAKVWKLHRRFHCQFDDNPMKPLSFISTRLTPSALSKALIGFIALVCLSLIMATA
CCCCHHHHHHHHHHHEECCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
WQMNQSKLERLATARIAVSNIVLAAEQQAQDTLQQADNTLRDLAERVEQDGAAGEQQSRL
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
TRLMAQDLVNVKGLQGLFIYDAQGNWVANSFAKGVQTRNNEDRAYFIYHRDNPDPSIHIG
HHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEE
SIVESRNTGDMIIPVSRRINAADGSFAGVALATVPVTYFQAFFQRMDVDDKGVIFLALNN
HHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECC
GDLLARRPTLTALMTTNVAKGDIFTRYLPYSDSGTAVINSVVDGVERIYAYRRVSGLPIV
CCEEEECCCEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE
AAAGISSQHVFAPWWAYAQRSMTITGIIILALVFLGVLLYRQIQQLITAEGELNIARNDL
EECCCCCCCEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCE
EIIAHTDSLTHLANRRCFDTALQQEWGRASRNDATIAIILLDIDWFKQYNDTYGHLQGDD
EEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECHHHHHCCCCCCCCCCHH
CLRQVAGLIGNSLDRSGDMAARYGGEEFVILLPETDLAGALKLAEKIRSSIEASCIEHSS
HHHHHHHHHCCCCCCCCCHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCC
SPLGRLSISSGVVAINAAEKKDAHTAALKEADRLLYLAKTKGRNRVEGRSIQGWQADSHF
CCCCEEEECCCEEEEECCCCCCHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCHH
ARVSSASP
HHCCCCCC
>Mature Secondary Structure
MFRLSVAKVWKLHRRFHCQFDDNPMKPLSFISTRLTPSALSKALIGFIALVCLSLIMATA
CCCCHHHHHHHHHHHEECCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
WQMNQSKLERLATARIAVSNIVLAAEQQAQDTLQQADNTLRDLAERVEQDGAAGEQQSRL
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
TRLMAQDLVNVKGLQGLFIYDAQGNWVANSFAKGVQTRNNEDRAYFIYHRDNPDPSIHIG
HHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEE
SIVESRNTGDMIIPVSRRINAADGSFAGVALATVPVTYFQAFFQRMDVDDKGVIFLALNN
HHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECC
GDLLARRPTLTALMTTNVAKGDIFTRYLPYSDSGTAVINSVVDGVERIYAYRRVSGLPIV
CCEEEECCCEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE
AAAGISSQHVFAPWWAYAQRSMTITGIIILALVFLGVLLYRQIQQLITAEGELNIARNDL
EECCCCCCCEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCE
EIIAHTDSLTHLANRRCFDTALQQEWGRASRNDATIAIILLDIDWFKQYNDTYGHLQGDD
EEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECHHHHHCCCCCCCCCCHH
CLRQVAGLIGNSLDRSGDMAARYGGEEFVILLPETDLAGALKLAEKIRSSIEASCIEHSS
HHHHHHHHHCCCCCCCCCHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCC
SPLGRLSISSGVVAINAAEKKDAHTAALKEADRLLYLAKTKGRNRVEGRSIQGWQADSHF
CCCCEEEECCCEEEEECCCCCCHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCHH
ARVSSASP
HHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]